Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Klhl8-202ENSMUST00000112811 2577 ntTSL 5 BASIC10.13□□□□□ -0.79
Hmgb3O54879 Pla2g4f-201ENSMUST00000054651 3116 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Hmgb3O54879 Klhl14-201ENSMUST00000049105 4018 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Hmgb3O54879 Shank2-205ENSMUST00000146006 7666 ntTSL 2 BASIC10.13□□□□□ -0.79
Hmgb3O54879 Pmp22-204ENSMUST00000108702 1822 ntAPPRIS P1 TSL 3 BASIC10.13□□□□□ -0.79
Hmgb3O54879 Selenoh-202ENSMUST00000102647 654 ntAPPRIS P2 TSL 1 (best) BASIC10.13□□□□□ -0.79
Hmgb3O54879 Gm14350-201ENSMUST00000116642 640 ntBASIC10.13□□□□□ -0.79
Hmgb3O54879 Gm13689-201ENSMUST00000119360 685 ntBASIC10.13□□□□□ -0.79
Hmgb3O54879 Rnaseh2a-206ENSMUST00000128972 1141 ntTSL 2 BASIC10.13□□□□□ -0.79
Hmgb3O54879 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC10.13□□□□□ -0.79
Hmgb3O54879 Dlx1as-202ENSMUST00000137251 647 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
Hmgb3O54879 4933427I22Rik-201ENSMUST00000138672 393 ntTSL 3 BASIC10.13□□□□□ -0.79
Hmgb3O54879 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC10.13□□□□□ -0.79
Hmgb3O54879 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
Hmgb3O54879 Smad7-204ENSMUST00000174411 769 ntTSL 5 BASIC10.13□□□□□ -0.79
Hmgb3O54879 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
Hmgb3O54879 Med10-201ENSMUST00000022089 913 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Hmgb3O54879 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC10.13□□□□□ -0.79
Hmgb3O54879 Gm9797-201ENSMUST00000052902 613 ntBASIC10.13□□□□□ -0.79
Hmgb3O54879 Otos-201ENSMUST00000053144 704 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Hmgb3O54879 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
Hmgb3O54879 2900055J20Rik-201ENSMUST00000096572 723 ntAPPRIS P1 BASIC10.13□□□□□ -0.79
Hmgb3O54879 Nlgn1-205ENSMUST00000193603 11807 ntAPPRIS P3 TSL 1 (best) BASIC10.13□□□□□ -0.79
Hmgb3O54879 Sema4c-208ENSMUST00000195620 3640 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Hmgb3O54879 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC10.13□□□□□ -0.79
Hmgb3O54879 Prrxl1-201ENSMUST00000068938 1610 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
Hmgb3O54879 4833439L19Rik-208ENSMUST00000153065 2502 ntTSL 5 BASIC10.13□□□□□ -0.79
Hmgb3O54879 Elavl2-207ENSMUST00000107118 3797 ntTSL 5 BASIC10.13□□□□□ -0.79
Hmgb3O54879 Tgm2-201ENSMUST00000103122 3596 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Hmgb3O54879 Aurkc-204ENSMUST00000208049 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC10.13□□□□□ -0.79
Hmgb3O54879 Zbtb43-201ENSMUST00000028125 4998 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Hmgb3O54879 Ccdc93-201ENSMUST00000036025 7274 ntAPPRIS P4 TSL 1 (best) BASIC10.13□□□□□ -0.79
Hmgb3O54879 Olfr742-202ENSMUST00000213935 2117 ntAPPRIS P1 TSL 5 BASIC10.13□□□□□ -0.79
Hmgb3O54879 Sept8-204ENSMUST00000121334 2801 ntAPPRIS ALT2 TSL 5 BASIC10.13□□□□□ -0.79
Hmgb3O54879 Svep1-201ENSMUST00000042850 11629 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Hmgb3O54879 Trim45-204ENSMUST00000134993 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC10.13□□□□□ -0.79
Hmgb3O54879 Parvg-201ENSMUST00000023074 2619 ntAPPRIS P3 TSL 1 (best) BASIC10.13□□□□□ -0.79
Hmgb3O54879 Coq8a-201ENSMUST00000027766 4026 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Hmgb3O54879 Papss1-201ENSMUST00000029666 2600 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Hmgb3O54879 Dzip1l-201ENSMUST00000078367 3981 ntAPPRIS P3 TSL 1 (best) BASIC10.13□□□□□ -0.79
Hmgb3O54879 Tekt3-201ENSMUST00000035732 1748 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Hmgb3O54879 Tbc1d24-209ENSMUST00000201301 4261 ntTSL 5 BASIC10.13□□□□□ -0.79
Hmgb3O54879 Ush1c-201ENSMUST00000009667 3072 ntAPPRIS P3 TSL 1 (best) BASIC10.13□□□□□ -0.79
Hmgb3O54879 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Hmgb3O54879 Epb41l3-202ENSMUST00000112680 4073 ntAPPRIS ALT2 TSL 5 BASIC10.12□□□□□ -0.79
Hmgb3O54879 Nhsl1-202ENSMUST00000100054 6795 ntAPPRIS ALT2 TSL 5 BASIC10.12□□□□□ -0.79
Hmgb3O54879 Cnot10-201ENSMUST00000070117 2853 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Hmgb3O54879 Myh1-203ENSMUST00000124516 6081 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Hmgb3O54879 Plec-203ENSMUST00000071869 14917 ntAPPRIS ALT2 TSL 1 (best) BASIC10.12□□□□□ -0.79
Hmgb3O54879 Chil1-201ENSMUST00000082060 1687 ntAPPRIS P2 TSL 1 (best) BASIC10.12□□□□□ -0.79
Hmgb3O54879 Fubp1-202ENSMUST00000166984 6523 ntAPPRIS P2 TSL 1 (best) BASIC10.12□□□□□ -0.79
Hmgb3O54879 Rnf165-201ENSMUST00000026494 7300 ntAPPRIS P1 TSL 5 BASIC10.12□□□□□ -0.79
Hmgb3O54879 Gpc5-203ENSMUST00000176912 2837 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
Hmgb3O54879 Npepps-215ENSMUST00000167806 2307 ntTSL 5 BASIC10.12□□□□□ -0.79
Hmgb3O54879 AC126257.2-201ENSMUST00000215507 2300 ntBASIC10.12□□□□□ -0.79
Hmgb3O54879 Rab17-201ENSMUST00000027529 1831 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Hmgb3O54879 Klk8-201ENSMUST00000085461 1322 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Hmgb3O54879 Tuba1a-201ENSMUST00000097014 1647 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Hmgb3O54879 Dach2-205ENSMUST00000113382 5155 ntAPPRIS ALT2 TSL 1 (best) BASIC10.12□□□□□ -0.79
Hmgb3O54879 Ctnnd1-211ENSMUST00000111685 5985 ntTSL 5 BASIC10.12□□□□□ -0.79
Hmgb3O54879 Ctnnd1-215ENSMUST00000111689 5961 ntTSL 5 BASIC10.12□□□□□ -0.79
Hmgb3O54879 Aamp-202ENSMUST00000178235 1756 ntAPPRIS ALT1 TSL 5 BASIC10.12□□□□□ -0.79
Hmgb3O54879 Trmt61b-202ENSMUST00000137830 2572 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
Hmgb3O54879 Mrap2-201ENSMUST00000049457 1931 ntAPPRIS P1 TSL 3 BASIC10.12□□□□□ -0.79
Hmgb3O54879 Ippk-201ENSMUST00000021817 2856 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
Hmgb3O54879 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
Hmgb3O54879 Ntan1-202ENSMUST00000115805 984 ntTSL 3 BASIC10.12□□□□□ -0.79
Hmgb3O54879 Gm14701-201ENSMUST00000117156 348 ntBASIC10.12□□□□□ -0.79
Hmgb3O54879 Rab4a-201ENSMUST00000117702 1080 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Hmgb3O54879 Mrps17-202ENSMUST00000118420 843 ntAPPRIS P1 TSL 2 BASIC10.12□□□□□ -0.79
Hmgb3O54879 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Hmgb3O54879 Mrps18c-201ENSMUST00000016977 638 ntAPPRIS P2 TSL 1 (best) BASIC10.12□□□□□ -0.79
Hmgb3O54879 1700095B10Rik-201ENSMUST00000182349 978 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
Hmgb3O54879 Ccnd3-208ENSMUST00000182539 931 ntTSL 2 BASIC10.12□□□□□ -0.79
Hmgb3O54879 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC10.12□□□□□ -0.79
Hmgb3O54879 2610300A13Rik-201ENSMUST00000192930 503 ntBASIC10.12□□□□□ -0.79
Hmgb3O54879 Gm38223-201ENSMUST00000194484 695 ntBASIC10.12□□□□□ -0.79
Hmgb3O54879 AC159263.1-201ENSMUST00000220746 482 ntTSL 5 BASIC10.12□□□□□ -0.79
Hmgb3O54879 Mrpl36-201ENSMUST00000022098 923 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Hmgb3O54879 AC173210.1-201ENSMUST00000222341 1131 ntBASIC10.12□□□□□ -0.79
Hmgb3O54879 Tex12-201ENSMUST00000034568 895 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Hmgb3O54879 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Hmgb3O54879 Rps5-201ENSMUST00000004554 761 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Hmgb3O54879 Gm20445-201ENSMUST00000061905 565 ntBASIC10.12□□□□□ -0.79
Hmgb3O54879 Ndufa3-201ENSMUST00000076657 515 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Hmgb3O54879 Mir339-201ENSMUST00000083659 96 ntBASIC10.12□□□□□ -0.79
Hmgb3O54879 Pros1-201ENSMUST00000023629 3303 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Hmgb3O54879 Gaa-203ENSMUST00000106259 3633 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Hmgb3O54879 Fetub-201ENSMUST00000023587 1573 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Hmgb3O54879 Snap23-201ENSMUST00000028743 2658 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Hmgb3O54879 Armc2-201ENSMUST00000095729 4855 ntAPPRIS P1 TSL 5 BASIC10.12□□□□□ -0.79
Hmgb3O54879 Recql4-201ENSMUST00000036852 3922 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Hmgb3O54879 Mdh1b-201ENSMUST00000114094 1719 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Hmgb3O54879 Gm14132-201ENSMUST00000117188 1719 ntBASIC10.12□□□□□ -0.79
Hmgb3O54879 9330199G10Rik-202ENSMUST00000221607 1728 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
Hmgb3O54879 Ebp-201ENSMUST00000033509 1743 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Hmgb3O54879 Nrg1-202ENSMUST00000207417 3138 ntAPPRIS ALT2 TSL 5 BASIC10.12□□□□□ -0.79
Hmgb3O54879 Gm5089-201ENSMUST00000081580 2008 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Hmgb3O54879 Prrx1-201ENSMUST00000027878 4952 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Hmgb3O54879 Hps1-209ENSMUST00000162061 2608 ntAPPRIS ALT2 TSL 1 (best) BASIC10.12□□□□□ -0.79
Retrieved 100 of 76,532 protein–RNA pairs in 211.1 ms