Protein–RNA interactions for Protein: O35988

Sdc4, Syndecan-4, mousemouse

Known RBP Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc4O35988 Tspan32-201ENSMUST00000009396 1582 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc4O35988 Gse1-201ENSMUST00000034279 7127 ntAPPRIS P4 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc4O35988 Gm36635-201ENSMUST00000221152 1332 ntTSL 5 BASIC12.64□□□□□ -0.39
Sdc4O35988 Gba-202ENSMUST00000167998 1938 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc4O35988 Cacna2d1-201ENSMUST00000039370 3933 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc4O35988 Pnpla6-211ENSMUST00000207941 4263 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc4O35988 Arhgap33-207ENSMUST00000208538 4372 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc4O35988 Dnaja2-201ENSMUST00000034138 2919 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc4O35988 Prom2-201ENSMUST00000028855 4796 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc4O35988 Lrrc8c-201ENSMUST00000067924 6976 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc4O35988 Dolpp1-202ENSMUST00000113612 1958 ntTSL 3 BASIC12.64□□□□□ -0.39
Sdc4O35988 Ndel1-202ENSMUST00000101017 1646 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc4O35988 Dynlrb1-202ENSMUST00000109682 684 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc4O35988 Gm16481-201ENSMUST00000119074 1227 ntBASIC12.64□□□□□ -0.39
Sdc4O35988 Gm10714-201ENSMUST00000131346 874 ntTSL 2 BASIC12.64□□□□□ -0.39
Sdc4O35988 Gm7568-202ENSMUST00000160446 709 ntTSL 3 BASIC12.64□□□□□ -0.39
Sdc4O35988 Gm5616-201ENSMUST00000165252 384 ntBASIC12.64□□□□□ -0.39
Sdc4O35988 1700121N20Rik-201ENSMUST00000167922 1027 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc4O35988 Gm8741-201ENSMUST00000174736 384 ntBASIC12.64□□□□□ -0.39
Sdc4O35988 Gm9630-201ENSMUST00000178304 885 ntBASIC12.64□□□□□ -0.39
Sdc4O35988 2810405F17Rik-201ENSMUST00000189334 1117 ntBASIC12.64□□□□□ -0.39
Sdc4O35988 Gm28071-201ENSMUST00000190355 478 ntBASIC12.64□□□□□ -0.39
Sdc4O35988 Gm43962-201ENSMUST00000203898 190 ntBASIC12.64□□□□□ -0.39
Sdc4O35988 Cacng1-201ENSMUST00000021065 1249 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc4O35988 Ggps1-204ENSMUST00000221713 667 ntTSL 3 BASIC12.64□□□□□ -0.39
Sdc4O35988 Zfp706-203ENSMUST00000226453 517 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
Sdc4O35988 Clpb-201ENSMUST00000001884 4627 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc4O35988 Col14a1-201ENSMUST00000023053 6457 ntAPPRIS ALT1 TSL 5 BASIC12.64□□□□□ -0.39
Sdc4O35988 Atxn10-201ENSMUST00000163242 2425 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc4O35988 Tmem25-201ENSMUST00000002100 2448 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc4O35988 Tmem201-203ENSMUST00000105687 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc4O35988 Tmeff2-201ENSMUST00000081851 3343 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc4O35988 Dnm2-206ENSMUST00000172482 2613 ntAPPRIS P4 TSL 5 BASIC12.64□□□□□ -0.39
Sdc4O35988 Aaas-201ENSMUST00000041208 1816 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc4O35988 Ppfia4-205ENSMUST00000189361 5238 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Sdc4O35988 Nrsn2-201ENSMUST00000079278 1455 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc4O35988 Olfr1411-203ENSMUST00000216444 1901 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
Sdc4O35988 AC126262.1-201ENSMUST00000221802 1904 ntBASIC12.64□□□□□ -0.39
Sdc4O35988 Fig4-201ENSMUST00000043814 3282 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc4O35988 Mtm1-203ENSMUST00000061970 3379 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc4O35988 Smg7-203ENSMUST00000111836 3928 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc4O35988 Uimc1-202ENSMUST00000099496 1678 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc4O35988 Kdm2b-203ENSMUST00000086200 4999 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
Sdc4O35988 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sdc4O35988 Comt-204ENSMUST00000165430 1978 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Sdc4O35988 Cd72-204ENSMUST00000107925 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sdc4O35988 Pigq-201ENSMUST00000026823 3173 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sdc4O35988 Rorc-204ENSMUST00000200009 1543 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Sdc4O35988 Myo15b-208ENSMUST00000222123 5154 ntTSL 5 BASIC12.63□□□□□ -0.39
Sdc4O35988 Tcf12-201ENSMUST00000034755 4621 ntAPPRIS ALT1 TSL 5 BASIC12.63□□□□□ -0.39
Sdc4O35988 Eif5-202ENSMUST00000166123 4050 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sdc4O35988 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Sdc4O35988 Glo1-201ENSMUST00000024823 1935 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sdc4O35988 Hao1-201ENSMUST00000028704 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sdc4O35988 Ighv1-80-201ENSMUST00000103547 351 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
Sdc4O35988 Gm23912-201ENSMUST00000104687 87 ntBASIC12.63□□□□□ -0.39
Sdc4O35988 Cstl1-202ENSMUST00000109954 454 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Sdc4O35988 Hopx-202ENSMUST00000113453 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sdc4O35988 Gm17040-202ENSMUST00000170597 889 ntBASIC12.63□□□□□ -0.39
Sdc4O35988 Gm3625-201ENSMUST00000170816 102 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
Sdc4O35988 Gm28287-201ENSMUST00000186612 546 ntTSL 5 BASIC12.63□□□□□ -0.39
Sdc4O35988 Gm37666-201ENSMUST00000194110 866 ntBASIC12.63□□□□□ -0.39
Sdc4O35988 Gm7003-201ENSMUST00000195089 312 ntBASIC12.63□□□□□ -0.39
Sdc4O35988 Pex3-201ENSMUST00000019945 2129 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sdc4O35988 9230114K14Rik-203ENSMUST00000199547 437 ntTSL 3 BASIC12.63□□□□□ -0.39
Sdc4O35988 4930504D19Rik-201ENSMUST00000204799 349 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Sdc4O35988 Nsd1-205ENSMUST00000224693 852 ntBASIC12.63□□□□□ -0.39
Sdc4O35988 3300002I08Rik-201ENSMUST00000051153 650 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sdc4O35988 Olfr887-201ENSMUST00000074681 930 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
Sdc4O35988 Hist1h3a-201ENSMUST00000091701 534 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
Sdc4O35988 1700003D09Rik-201ENSMUST00000141929 1389 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Sdc4O35988 Cyp2j13-203ENSMUST00000107078 1493 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Sdc4O35988 Gm43289-201ENSMUST00000200537 1475 ntBASIC12.63□□□□□ -0.39
Sdc4O35988 Prkar1b-203ENSMUST00000110890 2626 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sdc4O35988 Pex2-206ENSMUST00000195855 1587 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sdc4O35988 Rfx1-204ENSMUST00000211046 3677 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
Sdc4O35988 Plekhg4-201ENSMUST00000014927 4167 ntAPPRIS P2 TSL 5 BASIC12.63□□□□□ -0.39
Sdc4O35988 Cct5-201ENSMUST00000022842 1853 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sdc4O35988 Lrrc20-201ENSMUST00000049242 3216 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sdc4O35988 AC159195.1-201ENSMUST00000225867 2086 ntBASIC12.63□□□□□ -0.39
Sdc4O35988 Zfp41-201ENSMUST00000054555 3736 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sdc4O35988 Armc6-201ENSMUST00000019679 2263 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sdc4O35988 Zbtb42-203ENSMUST00000174780 3160 ntTSL 2 BASIC12.63□□□□□ -0.39
Sdc4O35988 Lrrfip2-213ENSMUST00000216430 1525 ntTSL 5 BASIC12.62□□□□□ -0.39
Sdc4O35988 Trpm1-219ENSMUST00000206314 2323 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Sdc4O35988 AC125108.1-201ENSMUST00000218986 2330 ntBASIC12.62□□□□□ -0.39
Sdc4O35988 Arhgef2-229ENSMUST00000177303 3000 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Sdc4O35988 Lbr-201ENSMUST00000005003 3510 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sdc4O35988 Pbxip1-201ENSMUST00000038942 4479 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sdc4O35988 Wscd1-201ENSMUST00000021168 2757 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sdc4O35988 Arhgap22-202ENSMUST00000111956 2596 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sdc4O35988 Slc39a9-208ENSMUST00000219706 5427 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Sdc4O35988 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
Sdc4O35988 Gm5847-201ENSMUST00000178959 1595 ntBASIC12.62□□□□□ -0.39
Sdc4O35988 Gramd2-201ENSMUST00000098661 1368 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sdc4O35988 Gm22133-201ENSMUST00000102082 109 ntBASIC12.62□□□□□ -0.39
Sdc4O35988 Cyb5d1-202ENSMUST00000108660 1034 ntTSL 5 BASIC12.62□□□□□ -0.39
Sdc4O35988 BC026585-202ENSMUST00000119891 1125 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Sdc4O35988 Cryge-202ENSMUST00000161960 690 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Sdc4O35988 Mir5120-201ENSMUST00000175020 78 ntBASIC12.62□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 87 ms