Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Krtap4-16-201ENSMUST00000107437 954 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Scn11aQ9R053 Tsc22d1-206ENSMUST00000134109 801 ntTSL 2 BASIC14.33□□□□□ -0.12
Scn11aQ9R053 Ighv2-1-201ENSMUST00000170946 353 ntBASIC14.33□□□□□ -0.12
Scn11aQ9R053 Smyd1-205ENSMUST00000173297 947 ntTSL 5 BASIC14.33□□□□□ -0.12
Scn11aQ9R053 1110059E24Rik-208ENSMUST00000179768 962 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
Scn11aQ9R053 Gm6450-201ENSMUST00000200896 574 ntBASIC14.33□□□□□ -0.12
Scn11aQ9R053 Gm7395-201ENSMUST00000216059 1045 ntBASIC14.33□□□□□ -0.12
Scn11aQ9R053 Odf3-201ENSMUST00000026555 1128 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Scn11aQ9R053 Phxr2-201ENSMUST00000060761 1159 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Scn11aQ9R053 Gm4978-201ENSMUST00000071565 801 ntBASIC14.33□□□□□ -0.12
Scn11aQ9R053 Rpl9-ps6-201ENSMUST00000078034 691 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Scn11aQ9R053 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC14.33□□□□□ -0.12
Scn11aQ9R053 Snhg17-203ENSMUST00000141809 1553 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Scn11aQ9R053 5330439B14Rik-201ENSMUST00000194811 1392 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Scn11aQ9R053 Tsku-203ENSMUST00000165257 2514 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
Scn11aQ9R053 1110059E24Rik-201ENSMUST00000038830 1614 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Scn11aQ9R053 Rad51c-201ENSMUST00000007790 1632 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Scn11aQ9R053 Dync1i1-204ENSMUST00000115559 2599 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Scn11aQ9R053 Ubqln5-201ENSMUST00000053743 1915 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Scn11aQ9R053 Lrrc8e-201ENSMUST00000053035 3878 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Scn11aQ9R053 Coch-201ENSMUST00000085412 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Scn11aQ9R053 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Scn11aQ9R053 Thrb-203ENSMUST00000091471 1758 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Scn11aQ9R053 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Scn11aQ9R053 Adam10-201ENSMUST00000067880 4593 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Scn11aQ9R053 Tnnt3-209ENSMUST00000105947 780 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Scn11aQ9R053 Gm15978-201ENSMUST00000161043 738 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Scn11aQ9R053 Gm10807-201ENSMUST00000177134 795 ntBASIC14.32□□□□□ -0.12
Scn11aQ9R053 Gm10550-201ENSMUST00000188846 982 ntTSL 2 BASIC14.32□□□□□ -0.12
Scn11aQ9R053 Ighv5-11-201ENSMUST00000193354 371 ntBASIC14.32□□□□□ -0.12
Scn11aQ9R053 Dnajb6-212ENSMUST00000198694 505 ntTSL 3 BASIC14.32□□□□□ -0.12
Scn11aQ9R053 Gm45441-202ENSMUST00000209301 1235 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Scn11aQ9R053 Colca2-202ENSMUST00000215038 1269 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Scn11aQ9R053 Nat8f6-201ENSMUST00000087656 925 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Scn11aQ9R053 Gm5544-201ENSMUST00000098828 891 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Scn11aQ9R053 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Scn11aQ9R053 Cfap161-201ENSMUST00000011298 1335 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Scn11aQ9R053 Sln-201ENSMUST00000048485 1318 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Scn11aQ9R053 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC14.32□□□□□ -0.12
Scn11aQ9R053 Wdr25-202ENSMUST00000167816 2657 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Scn11aQ9R053 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Scn11aQ9R053 Cdc7-201ENSMUST00000031221 2961 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Scn11aQ9R053 Vamp1-203ENSMUST00000100942 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Scn11aQ9R053 Clcn6-201ENSMUST00000030879 3306 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Scn11aQ9R053 Oscar-203ENSMUST00000148012 1796 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Scn11aQ9R053 Ube2q2-203ENSMUST00000122441 2081 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Scn11aQ9R053 Acin1-208ENSMUST00000126166 2369 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Scn11aQ9R053 Csrnp1-204ENSMUST00000215916 2956 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Scn11aQ9R053 Limd2-201ENSMUST00000045923 2950 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Scn11aQ9R053 Grm5-204ENSMUST00000155358 4500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Scn11aQ9R053 Zscan29-205ENSMUST00000163766 3611 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Scn11aQ9R053 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC14.32□□□□□ -0.12
Scn11aQ9R053 Prkg1-202ENSMUST00000073581 2841 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Scn11aQ9R053 Gm16071-201ENSMUST00000119589 793 ntBASIC14.32□□□□□ -0.12
Scn11aQ9R053 BC016548-202ENSMUST00000153797 805 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Scn11aQ9R053 Ly6e-203ENSMUST00000185861 838 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
Scn11aQ9R053 Rpain-201ENSMUST00000018593 1100 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Scn11aQ9R053 Gm17826-201ENSMUST00000189720 798 ntBASIC14.32□□□□□ -0.12
Scn11aQ9R053 1700088E04Rik-210ENSMUST00000190509 871 ntTSL 5 BASIC14.32□□□□□ -0.12
Scn11aQ9R053 Gm42980-201ENSMUST00000200582 1028 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Scn11aQ9R053 Scg5-201ENSMUST00000024005 1208 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Scn11aQ9R053 Tbca-201ENSMUST00000046644 559 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Scn11aQ9R053 Lhcgr-201ENSMUST00000024916 2553 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Scn11aQ9R053 Vps33b-201ENSMUST00000032749 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Scn11aQ9R053 Mak-202ENSMUST00000070193 2937 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Scn11aQ9R053 Cyp8b1-201ENSMUST00000062474 1950 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Scn11aQ9R053 2810403A07Rik-201ENSMUST00000029696 2981 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Scn11aQ9R053 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Scn11aQ9R053 Sept4-203ENSMUST00000107960 1653 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Scn11aQ9R053 Map4k1-203ENSMUST00000208227 2720 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Scn11aQ9R053 Map4k1-201ENSMUST00000085835 2724 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Scn11aQ9R053 Anks1b-231ENSMUST00000183136 2786 ntTSL 5 BASIC14.31□□□□□ -0.12
Scn11aQ9R053 Zfp367-201ENSMUST00000059817 3532 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Scn11aQ9R053 Mark2-215ENSMUST00000168872 2124 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Scn11aQ9R053 Gm7537-201ENSMUST00000221660 1414 ntBASIC14.31□□□□□ -0.12
Scn11aQ9R053 Gm42928-201ENSMUST00000197338 3339 ntBASIC14.31□□□□□ -0.12
Scn11aQ9R053 Cep85-201ENSMUST00000040271 3893 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Scn11aQ9R053 Ppp1r13l-201ENSMUST00000047621 3130 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Scn11aQ9R053 Plekhn1-203ENSMUST00000217885 1982 ntTSL 5 BASIC14.31□□□□□ -0.12
Scn11aQ9R053 Osgin1-206ENSMUST00000152420 2005 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Scn11aQ9R053 Ubap2l-202ENSMUST00000064639 4073 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Scn11aQ9R053 Sfmbt1-206ENSMUST00000228006 3299 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
Scn11aQ9R053 Trpc2-201ENSMUST00000124189 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Scn11aQ9R053 Cep170b-211ENSMUST00000222711 6566 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Scn11aQ9R053 Gm13328-201ENSMUST00000120816 1020 ntBASIC14.31□□□□□ -0.12
Scn11aQ9R053 1810020O05Rik-201ENSMUST00000162547 1047 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Scn11aQ9R053 Gm22877-201ENSMUST00000175451 105 ntBASIC14.31□□□□□ -0.12
Scn11aQ9R053 Gm42518-201ENSMUST00000196277 938 ntBASIC14.31□□□□□ -0.12
Scn11aQ9R053 Gm21221-201ENSMUST00000202876 1073 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Scn11aQ9R053 Gm9132-201ENSMUST00000210182 832 ntBASIC14.31□□□□□ -0.12
Scn11aQ9R053 Gm7940-201ENSMUST00000218195 769 ntBASIC14.31□□□□□ -0.12
Scn11aQ9R053 Abcb6-201ENSMUST00000027396 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Scn11aQ9R053 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Scn11aQ9R053 Ttc29-202ENSMUST00000109902 1416 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Scn11aQ9R053 Dph3-202ENSMUST00000067955 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Scn11aQ9R053 Efcab14-203ENSMUST00000106524 1544 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Scn11aQ9R053 Arrdc4-201ENSMUST00000048068 3905 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Scn11aQ9R053 Gm2916-202ENSMUST00000181779 1702 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Scn11aQ9R053 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
Scn11aQ9R053 Pla2g16-202ENSMUST00000136465 3048 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 70.7 ms