Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 AC158523.3-201ENSMUST00000220664 864 ntTSL 5 BASIC13.32□□□□□ -0.28
Trim54Q9ERP3 Gm46400-201ENSMUST00000222294 724 ntTSL 5 BASIC13.32□□□□□ -0.28
Trim54Q9ERP3 Dhrs4-202ENSMUST00000226168 828 ntBASIC13.32□□□□□ -0.28
Trim54Q9ERP3 Rpl24-201ENSMUST00000023269 677 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Trim54Q9ERP3 Ntan1-201ENSMUST00000023362 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Trim54Q9ERP3 Recql-201ENSMUST00000032370 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Trim54Q9ERP3 Fn1-201ENSMUST00000055226 8315 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
Trim54Q9ERP3 Gm16070-203ENSMUST00000155588 1902 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Trim54Q9ERP3 Dennd2d-201ENSMUST00000029508 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Trim54Q9ERP3 Ticrr-201ENSMUST00000035977 7199 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Trim54Q9ERP3 Bend3-201ENSMUST00000040147 5882 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Trim54Q9ERP3 Gm36864-203ENSMUST00000223070 1513 ntAPPRIS P5 TSL 5 BASIC13.32□□□□□ -0.28
Trim54Q9ERP3 Wfdc8-201ENSMUST00000094351 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Trim54Q9ERP3 Slc30a3-206ENSMUST00000202740 1989 ntTSL 5 BASIC13.32□□□□□ -0.28
Trim54Q9ERP3 Mroh1-204ENSMUST00000159218 5085 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Trim54Q9ERP3 Gm5525-201ENSMUST00000190438 1312 ntBASIC13.32□□□□□ -0.28
Trim54Q9ERP3 Lrrc30-201ENSMUST00000097290 1759 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
Trim54Q9ERP3 Cflar-202ENSMUST00000097722 1771 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Trim54Q9ERP3 Gse1-201ENSMUST00000034279 7127 ntAPPRIS P4 TSL 1 (best) BASIC13.32□□□□□ -0.28
Trim54Q9ERP3 Slc39a8-206ENSMUST00000180196 3383 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Trim54Q9ERP3 AC123619.2-202ENSMUST00000225097 1568 ntBASIC13.32□□□□□ -0.28
Trim54Q9ERP3 Ap4b1-203ENSMUST00000106823 2741 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Trim54Q9ERP3 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Trim54Q9ERP3 6030443J06Rik-202ENSMUST00000181374 1353 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Trim54Q9ERP3 Ttc34-201ENSMUST00000050220 3200 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Trim54Q9ERP3 Rab11a-208ENSMUST00000172298 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trim54Q9ERP3 Rbpsuh-rs3-201ENSMUST00000182751 1441 ntBASIC13.31□□□□□ -0.28
Trim54Q9ERP3 Mrap2-201ENSMUST00000049457 1931 ntAPPRIS P1 TSL 3 BASIC13.31□□□□□ -0.28
Trim54Q9ERP3 Gm7002-201ENSMUST00000221386 2165 ntBASIC13.31□□□□□ -0.28
Trim54Q9ERP3 Fgfr3-209ENSMUST00000164207 4150 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trim54Q9ERP3 Snap23-202ENSMUST00000110711 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trim54Q9ERP3 Foxb1-201ENSMUST00000071281 2984 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trim54Q9ERP3 Cramp1l-201ENSMUST00000073337 7517 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trim54Q9ERP3 Plcb1-202ENSMUST00000110116 7003 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trim54Q9ERP3 Pcbp3-203ENSMUST00000105411 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trim54Q9ERP3 Ighv5-2-201ENSMUST00000103442 350 ntAPPRIS ALT2 BASIC13.31□□□□□ -0.28
Trim54Q9ERP3 Cstl1-202ENSMUST00000109954 454 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Trim54Q9ERP3 Il15ra-204ENSMUST00000114832 468 ntTSL 5 BASIC13.31□□□□□ -0.28
Trim54Q9ERP3 Pyy-202ENSMUST00000127381 529 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
Trim54Q9ERP3 Tmem116-209ENSMUST00000156080 1184 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trim54Q9ERP3 Sh2d6-203ENSMUST00000159877 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trim54Q9ERP3 Gm38304-201ENSMUST00000161826 600 ntTSL 3 BASIC13.31□□□□□ -0.28
Trim54Q9ERP3 Sh2d6-206ENSMUST00000162561 1251 ntAPPRIS P5 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trim54Q9ERP3 Gm8546-201ENSMUST00000178288 1264 ntBASIC13.31□□□□□ -0.28
Trim54Q9ERP3 Gm5732-201ENSMUST00000182596 1007 ntBASIC13.31□□□□□ -0.28
Trim54Q9ERP3 4930589O11Rik-201ENSMUST00000200768 920 ntBASIC13.31□□□□□ -0.28
Trim54Q9ERP3 Mob2-203ENSMUST00000209732 977 ntAPPRIS ALT2 TSL 3 BASIC13.31□□□□□ -0.28
Trim54Q9ERP3 Gm45765-201ENSMUST00000212027 1035 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Trim54Q9ERP3 Spcs1-203ENSMUST00000226374 592 ntBASIC13.31□□□□□ -0.28
Trim54Q9ERP3 Ankrd2-201ENSMUST00000026172 1100 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trim54Q9ERP3 Arid5a-204ENSMUST00000115032 4640 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trim54Q9ERP3 Bcl7a-201ENSMUST00000031391 4718 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trim54Q9ERP3 Tspan32-201ENSMUST00000009396 1582 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trim54Q9ERP3 Gm17518-201ENSMUST00000181232 1346 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Trim54Q9ERP3 Gm45706-201ENSMUST00000213063 2136 ntBASIC13.31□□□□□ -0.28
Trim54Q9ERP3 Zkscan3-207ENSMUST00000223831 2101 ntBASIC13.31□□□□□ -0.28
Trim54Q9ERP3 Arfgap1-204ENSMUST00000108861 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trim54Q9ERP3 Sgce-209ENSMUST00000133306 1619 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Trim54Q9ERP3 Pde4d-205ENSMUST00000119507 2163 ntTSL 5 BASIC13.31□□□□□ -0.28
Trim54Q9ERP3 Mthfsd-210ENSMUST00000139782 1366 ntTSL 5 BASIC13.31□□□□□ -0.28
Trim54Q9ERP3 2310035C23Rik-210ENSMUST00000190501 3852 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trim54Q9ERP3 Rccd1-201ENSMUST00000047362 3336 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trim54Q9ERP3 5033406O09Rik-201ENSMUST00000221314 1662 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Trim54Q9ERP3 Lman1l-202ENSMUST00000093832 1685 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trim54Q9ERP3 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Trim54Q9ERP3 Nbeal2-211ENSMUST00000196488 8599 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Trim54Q9ERP3 Podn-201ENSMUST00000044248 2885 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Trim54Q9ERP3 Mtmr2-201ENSMUST00000034396 3788 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim54Q9ERP3 Zfp148-202ENSMUST00000165418 9431 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim54Q9ERP3 Elp5-201ENSMUST00000108594 1454 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim54Q9ERP3 Cacnb4-206ENSMUST00000178799 7981 ntTSL 5 BASIC13.3□□□□□ -0.28
Trim54Q9ERP3 Plk-ps1-201ENSMUST00000119494 1787 ntBASIC13.3□□□□□ -0.28
Trim54Q9ERP3 Kif1a-202ENSMUST00000112958 5931 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Trim54Q9ERP3 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim54Q9ERP3 Pfkfb3-220ENSMUST00000192949 4801 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Trim54Q9ERP3 Alpk3-201ENSMUST00000107348 6369 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim54Q9ERP3 Rgs12-201ENSMUST00000030984 5472 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim54Q9ERP3 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim54Q9ERP3 Brd3-202ENSMUST00000077737 5272 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim54Q9ERP3 Larp4-202ENSMUST00000100206 6523 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim54Q9ERP3 Abca7-203ENSMUST00000171637 6638 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim54Q9ERP3 Ighg2c-201ENSMUST00000103416 1214 ntAPPRIS P5 BASIC13.3□□□□□ -0.28
Trim54Q9ERP3 Mdk-ps1-201ENSMUST00000119782 321 ntBASIC13.3□□□□□ -0.28
Trim54Q9ERP3 Prkaca-ps1-201ENSMUST00000120823 919 ntBASIC13.3□□□□□ -0.28
Trim54Q9ERP3 Gm14396-201ENSMUST00000126966 548 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Trim54Q9ERP3 Gm1667-201ENSMUST00000151651 558 ntTSL 3 BASIC13.3□□□□□ -0.28
Trim54Q9ERP3 Atp10d-206ENSMUST00000169617 761 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Trim54Q9ERP3 Gnpda2-207ENSMUST00000173927 1011 ntAPPRIS ALT1 TSL 5 BASIC13.3□□□□□ -0.28
Trim54Q9ERP3 Gm28982-201ENSMUST00000186895 512 ntTSL 3 BASIC13.3□□□□□ -0.28
Trim54Q9ERP3 Gm9555-201ENSMUST00000200908 583 ntBASIC13.3□□□□□ -0.28
Trim54Q9ERP3 AC160052.1-201ENSMUST00000213173 1248 ntTSL 5 BASIC13.3□□□□□ -0.28
Trim54Q9ERP3 AC093022.5-201ENSMUST00000226841 1079 ntBASIC13.3□□□□□ -0.28
Trim54Q9ERP3 AC131330.1-201ENSMUST00000227814 1015 ntBASIC13.3□□□□□ -0.28
Trim54Q9ERP3 Il17c-201ENSMUST00000050963 719 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim54Q9ERP3 Hist1h3a-201ENSMUST00000091701 534 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
Trim54Q9ERP3 Zfp354a-202ENSMUST00000102766 2592 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim54Q9ERP3 Ssh1-202ENSMUST00000112298 5584 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim54Q9ERP3 Gm43045-201ENSMUST00000198725 2095 ntBASIC13.3□□□□□ -0.28
Trim54Q9ERP3 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Trim54Q9ERP3 Hnrnpdl-202ENSMUST00000128187 2752 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 37.8 ms