Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Ppm1b-203ENSMUST00000112305 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Scn4aQ9ER60 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Scn4aQ9ER60 Axin2-202ENSMUST00000106711 2551 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Scn4aQ9ER60 Gm13284-201ENSMUST00000121020 547 ntBASIC16.29■□□□□ 0.2
Scn4aQ9ER60 6430531B16Rik-202ENSMUST00000121412 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Scn4aQ9ER60 Gm43564-201ENSMUST00000196185 211 ntBASIC16.29■□□□□ 0.2
Scn4aQ9ER60 Wbp1-209ENSMUST00000205023 716 ntBASIC16.29■□□□□ 0.2
Scn4aQ9ER60 Gm45609-204ENSMUST00000209837 1207 ntTSL 5 BASIC16.29■□□□□ 0.2
Scn4aQ9ER60 AC154461.1-201ENSMUST00000224207 1005 ntBASIC16.29■□□□□ 0.2
Scn4aQ9ER60 Ifnl3-201ENSMUST00000078364 582 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Scn4aQ9ER60 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Scn4aQ9ER60 Gm6189-201ENSMUST00000164487 2082 ntBASIC16.29■□□□□ 0.2
Scn4aQ9ER60 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Scn4aQ9ER60 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Scn4aQ9ER60 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
Scn4aQ9ER60 Rab3c-202ENSMUST00000223922 2398 ntBASIC16.29■□□□□ 0.2
Scn4aQ9ER60 Gabrr2-202ENSMUST00000108162 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Scn4aQ9ER60 Gm13561-201ENSMUST00000136879 1826 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Scn4aQ9ER60 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC16.29■□□□□ 0.2
Scn4aQ9ER60 Rad51ap1-202ENSMUST00000112221 1871 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Scn4aQ9ER60 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC16.29■□□□□ 0.2
Scn4aQ9ER60 Ifitm7-201ENSMUST00000117803 853 ntAPPRIS P5 TSL 1 (best) BASIC16.29■□□□□ 0.2
Scn4aQ9ER60 1700017J07Rik-201ENSMUST00000140241 473 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Scn4aQ9ER60 Chn2-209ENSMUST00000146114 1227 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Scn4aQ9ER60 Gm16283-201ENSMUST00000149935 522 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Scn4aQ9ER60 Gm6548-201ENSMUST00000167498 1165 ntBASIC16.29■□□□□ 0.2
Scn4aQ9ER60 Gm26725-201ENSMUST00000180652 1113 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Scn4aQ9ER60 Milr1-206ENSMUST00000182896 918 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Scn4aQ9ER60 Milr1-207ENSMUST00000182908 811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Scn4aQ9ER60 Gm26782-203ENSMUST00000227103 751 ntBASIC16.29■□□□□ 0.2
Scn4aQ9ER60 Hbb-y-201ENSMUST00000033229 633 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Scn4aQ9ER60 Fcer1g-201ENSMUST00000079957 674 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Scn4aQ9ER60 Wiz-201ENSMUST00000064694 2871 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
Scn4aQ9ER60 Gm16070-203ENSMUST00000155588 1902 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Scn4aQ9ER60 Gm6210-201ENSMUST00000204734 1942 ntBASIC16.28■□□□□ 0.2
Scn4aQ9ER60 1810030O07Rik-201ENSMUST00000060108 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Scn4aQ9ER60 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
Scn4aQ9ER60 Micu1-201ENSMUST00000020311 2336 ntTSL 5 BASIC16.28■□□□□ 0.2
Scn4aQ9ER60 Mphosph10-201ENSMUST00000032735 2248 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Scn4aQ9ER60 Islr-201ENSMUST00000041477 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Scn4aQ9ER60 Gm18227-201ENSMUST00000211082 1468 ntBASIC16.28■□□□□ 0.2
Scn4aQ9ER60 F7-201ENSMUST00000033820 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Scn4aQ9ER60 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Scn4aQ9ER60 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
Scn4aQ9ER60 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Scn4aQ9ER60 Alms1-ps1-201ENSMUST00000159498 2166 ntBASIC16.28■□□□□ 0.2
Scn4aQ9ER60 Rita1-207ENSMUST00000177800 1668 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Scn4aQ9ER60 Gm24933-201ENSMUST00000103762 110 ntBASIC16.28■□□□□ 0.2
Scn4aQ9ER60 Gm23252-201ENSMUST00000103776 110 ntBASIC16.28■□□□□ 0.2
Scn4aQ9ER60 Gm22495-201ENSMUST00000104492 126 ntBASIC16.28■□□□□ 0.2
Scn4aQ9ER60 Capns1-202ENSMUST00000108196 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Scn4aQ9ER60 Gm15528-201ENSMUST00000117821 864 ntBASIC16.28■□□□□ 0.2
Scn4aQ9ER60 Dnmt3l-203ENSMUST00000131825 1113 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Scn4aQ9ER60 Dnmt3l-206ENSMUST00000139539 1279 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Scn4aQ9ER60 Mir1941-201ENSMUST00000157834 83 ntBASIC16.28■□□□□ 0.2
Scn4aQ9ER60 Gm26443-201ENSMUST00000179610 110 ntBASIC16.28■□□□□ 0.2
Scn4aQ9ER60 4933402C05Rik-201ENSMUST00000208189 1035 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Scn4aQ9ER60 Gm3635-201ENSMUST00000212314 354 ntBASIC16.28■□□□□ 0.2
Scn4aQ9ER60 CT025618.1-201ENSMUST00000227409 1279 ntBASIC16.28■□□□□ 0.2
Scn4aQ9ER60 Uqcc1-201ENSMUST00000006036 808 ntTSL 5 BASIC16.28■□□□□ 0.2
Scn4aQ9ER60 Olfr1417-201ENSMUST00000061235 948 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Scn4aQ9ER60 Ttc24-202ENSMUST00000064550 671 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Scn4aQ9ER60 Taar7a-201ENSMUST00000078532 1077 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Scn4aQ9ER60 Taar7b-201ENSMUST00000092658 1077 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Scn4aQ9ER60 Nlrp6-204ENSMUST00000184560 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Scn4aQ9ER60 Wwp2-205ENSMUST00000212543 1996 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Scn4aQ9ER60 Ints13-201ENSMUST00000032427 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Scn4aQ9ER60 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
Scn4aQ9ER60 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Scn4aQ9ER60 Ctnnb1-214ENSMUST00000178812 2702 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Scn4aQ9ER60 Rcbtb2-202ENSMUST00000110952 2176 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Scn4aQ9ER60 Mpv17l-204ENSMUST00000141971 2155 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Scn4aQ9ER60 Gm11766-201ENSMUST00000143428 3018 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Scn4aQ9ER60 Rbm4-206ENSMUST00000180248 2610 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Scn4aQ9ER60 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Scn4aQ9ER60 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Scn4aQ9ER60 Nelfcd-202ENSMUST00000109075 2279 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Scn4aQ9ER60 Pik3ip1-201ENSMUST00000045153 2573 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Scn4aQ9ER60 Gm16228-201ENSMUST00000162286 809 ntBASIC16.27■□□□□ 0.2
Scn4aQ9ER60 Gm26918-201ENSMUST00000182496 728 ntTSL 2 BASIC16.27■□□□□ 0.2
Scn4aQ9ER60 Gm7572-201ENSMUST00000182616 766 ntBASIC16.27■□□□□ 0.2
Scn4aQ9ER60 Gm28505-201ENSMUST00000190466 680 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Scn4aQ9ER60 Gm4032-203ENSMUST00000211600 531 ntTSL 3 BASIC16.27■□□□□ 0.2
Scn4aQ9ER60 Il18-203ENSMUST00000213916 885 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Scn4aQ9ER60 Gm32743-201ENSMUST00000214196 594 ntTSL 3 BASIC16.27■□□□□ 0.2
Scn4aQ9ER60 Rps14-201ENSMUST00000025511 683 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Scn4aQ9ER60 Ggta1-201ENSMUST00000044255 1221 ntAPPRIS P3 TSL 5 BASIC16.27■□□□□ 0.2
Scn4aQ9ER60 Tmpo-202ENSMUST00000072239 3533 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Scn4aQ9ER60 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Scn4aQ9ER60 Adam15-201ENSMUST00000029676 2975 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.2
Scn4aQ9ER60 Sept8-204ENSMUST00000121334 2801 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
Scn4aQ9ER60 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Scn4aQ9ER60 Gm37600-201ENSMUST00000193764 3292 ntBASIC16.27■□□□□ 0.19
Scn4aQ9ER60 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Scn4aQ9ER60 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
Scn4aQ9ER60 Ino80dos-201ENSMUST00000138611 1576 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Scn4aQ9ER60 Desi1-206ENSMUST00000152227 2934 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Scn4aQ9ER60 Gm15610-201ENSMUST00000120584 195 ntBASIC16.26■□□□□ 0.19
Scn4aQ9ER60 Gm20441-201ENSMUST00000173512 756 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Scn4aQ9ER60 Vmn2r-ps9-201ENSMUST00000177446 1099 ntBASIC16.26■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 71.6 ms