Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Exog-201ENSMUST00000035094 3832 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ushbp1Q8R370 Mfsd4a-207ENSMUST00000159038 1957 ntAPPRIS P2 TSL 5 BASIC13.78□□□□□ -0.2
Ushbp1Q8R370 Tnrc6c-201ENSMUST00000026658 8724 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
Ushbp1Q8R370 Usp14-201ENSMUST00000092096 2360 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ushbp1Q8R370 Dhx37-201ENSMUST00000169485 4760 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ushbp1Q8R370 Tubgcp3-201ENSMUST00000000776 3797 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ushbp1Q8R370 Arhgap12-211ENSMUST00000182383 2500 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
Ushbp1Q8R370 Gngt2-207ENSMUST00000107714 558 ntAPPRIS P1 TSL 3 BASIC13.78□□□□□ -0.2
Ushbp1Q8R370 Stpg3-202ENSMUST00000114363 1234 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ushbp1Q8R370 Gm11531-201ENSMUST00000117614 555 ntBASIC13.78□□□□□ -0.2
Ushbp1Q8R370 Gm14263-201ENSMUST00000117955 746 ntBASIC13.78□□□□□ -0.2
Ushbp1Q8R370 Gm12566-201ENSMUST00000121479 359 ntBASIC13.78□□□□□ -0.2
Ushbp1Q8R370 Ccdc188-201ENSMUST00000167061 747 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
Ushbp1Q8R370 1700125G22Rik-201ENSMUST00000181124 861 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Ushbp1Q8R370 Gm26973-201ENSMUST00000182105 696 ntTSL 3 BASIC13.78□□□□□ -0.2
Ushbp1Q8R370 2010010A06Rik-201ENSMUST00000185628 258 ntBASIC13.78□□□□□ -0.2
Ushbp1Q8R370 Atraid-205ENSMUST00000201136 894 ntAPPRIS ALT2 TSL 3 BASIC13.78□□□□□ -0.2
Ushbp1Q8R370 Gm42800-201ENSMUST00000202494 733 ntTSL 5 BASIC13.78□□□□□ -0.2
Ushbp1Q8R370 Gm44882-201ENSMUST00000205702 802 ntBASIC13.78□□□□□ -0.2
Ushbp1Q8R370 Brsk1-205ENSMUST00000206024 1216 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Ushbp1Q8R370 1700112L15Rik-201ENSMUST00000212067 510 ntBASIC13.78□□□□□ -0.2
Ushbp1Q8R370 Cdc34-208ENSMUST00000219791 799 ntTSL 3 BASIC13.78□□□□□ -0.2
Ushbp1Q8R370 Ntan1-201ENSMUST00000023362 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ushbp1Q8R370 Cym-201ENSMUST00000029504 1236 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ushbp1Q8R370 Trex2-201ENSMUST00000033738 1017 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ushbp1Q8R370 U2af1l4-201ENSMUST00000043273 884 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ushbp1Q8R370 Cryga-201ENSMUST00000061497 625 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ushbp1Q8R370 Chchd3-202ENSMUST00000115091 1363 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Ushbp1Q8R370 Ankrd42-201ENSMUST00000056106 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ushbp1Q8R370 Stau2-214ENSMUST00000162007 2964 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Ushbp1Q8R370 Ap5b1-201ENSMUST00000096318 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ushbp1Q8R370 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
Ushbp1Q8R370 Uap1l1-201ENSMUST00000102925 3349 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ushbp1Q8R370 Rph3al-201ENSMUST00000021208 1690 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Ushbp1Q8R370 Adcyap1r1-203ENSMUST00000165786 1745 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
Ushbp1Q8R370 Sesn2-201ENSMUST00000030724 3475 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ushbp1Q8R370 Sv2b-202ENSMUST00000165175 5524 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ushbp1Q8R370 Cd300lf-202ENSMUST00000106561 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ushbp1Q8R370 Ccdc89-201ENSMUST00000061391 2093 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
Ushbp1Q8R370 Abcg8-203ENSMUST00000171915 2284 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ushbp1Q8R370 Rps6ka6-210ENSMUST00000137712 2410 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
Ushbp1Q8R370 Ciz1-202ENSMUST00000113331 2604 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.2
Ushbp1Q8R370 St6galnac4-204ENSMUST00000179989 2826 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Ushbp1Q8R370 E2f7-209ENSMUST00000174857 2865 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
Ushbp1Q8R370 Dnaic2-201ENSMUST00000069325 2874 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.2
Ushbp1Q8R370 Arhgap24-206ENSMUST00000112854 2991 ntTSL 5 BASIC13.77□□□□□ -0.2
Ushbp1Q8R370 Cdc7-201ENSMUST00000031221 2961 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.2
Ushbp1Q8R370 D230017M19Rik-201ENSMUST00000180722 3096 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
Ushbp1Q8R370 Cdc37l1-208ENSMUST00000225310 4079 ntAPPRIS ALT2 BASIC13.77□□□□□ -0.2
Ushbp1Q8R370 Nxf1-211ENSMUST00000184970 5591 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
Ushbp1Q8R370 Plxnb2-202ENSMUST00000109331 6377 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
Ushbp1Q8R370 Ppara-203ENSMUST00000109423 2519 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Ushbp1Q8R370 Cdv3-203ENSMUST00000116517 3741 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Ushbp1Q8R370 Gm14130-201ENSMUST00000118417 987 ntBASIC13.77□□□□□ -0.21
Ushbp1Q8R370 Gm12217-201ENSMUST00000118858 696 ntBASIC13.77□□□□□ -0.21
Ushbp1Q8R370 Ggnbp1-202ENSMUST00000122106 1107 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
Ushbp1Q8R370 D630024D03Rik-201ENSMUST00000126265 720 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Ushbp1Q8R370 Pdlim2-204ENSMUST00000127836 920 ntTSL 5 BASIC13.77□□□□□ -0.21
Ushbp1Q8R370 Gm13570-201ENSMUST00000140763 309 ntBASIC13.77□□□□□ -0.21
Ushbp1Q8R370 Gm15276-201ENSMUST00000145953 498 ntBASIC13.77□□□□□ -0.21
Ushbp1Q8R370 Gng2-205ENSMUST00000161247 419 ntAPPRIS P1 TSL 3 BASIC13.77□□□□□ -0.21
Ushbp1Q8R370 Arf4os-201ENSMUST00000166902 566 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Ushbp1Q8R370 Eif4ebp2-202ENSMUST00000167087 1422 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
Ushbp1Q8R370 H2-Ob-202ENSMUST00000167280 1878 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Ushbp1Q8R370 A730071L15Rik-201ENSMUST00000181545 1615 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
Ushbp1Q8R370 Mir6927-201ENSMUST00000184494 71 ntBASIC13.77□□□□□ -0.21
Ushbp1Q8R370 Spock1-202ENSMUST00000185502 4614 ntAPPRIS ALT1 TSL 5 BASIC13.77□□□□□ -0.21
Ushbp1Q8R370 Rpl7a-ps2-201ENSMUST00000200554 774 ntBASIC13.77□□□□□ -0.21
Ushbp1Q8R370 Abhd1-202ENSMUST00000201125 1352 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Ushbp1Q8R370 Gm2420-203ENSMUST00000202748 447 ntTSL 5 BASIC13.77□□□□□ -0.21
Ushbp1Q8R370 Gm18263-201ENSMUST00000220846 1928 ntBASIC13.77□□□□□ -0.21
Ushbp1Q8R370 Gm19221-201ENSMUST00000221827 1477 ntBASIC13.77□□□□□ -0.21
Ushbp1Q8R370 Cwc27-201ENSMUST00000022228 2071 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Ushbp1Q8R370 Ebag9-201ENSMUST00000022964 1613 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Ushbp1Q8R370 Ttc4-201ENSMUST00000026480 2121 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Ushbp1Q8R370 Ptpn1-201ENSMUST00000029053 4213 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Ushbp1Q8R370 Prorsd1-201ENSMUST00000039900 918 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Ushbp1Q8R370 Mtmr3-201ENSMUST00000040448 5534 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
Ushbp1Q8R370 Olfr524-201ENSMUST00000051943 1058 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
Ushbp1Q8R370 Zfp536-201ENSMUST00000056338 4621 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Ushbp1Q8R370 Rdh8-201ENSMUST00000066387 1405 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
Ushbp1Q8R370 Drc3-202ENSMUST00000094140 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Ushbp1Q8R370 Ankrd17-201ENSMUST00000014421 10458 ntAPPRIS P4 TSL 5 BASIC13.77□□□□□ -0.21
Ushbp1Q8R370 Slc25a24-201ENSMUST00000029477 3431 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Ushbp1Q8R370 Irs4-201ENSMUST00000067841 6294 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Ushbp1Q8R370 Rara-207ENSMUST00000164748 3129 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Ushbp1Q8R370 Spag9-202ENSMUST00000041956 7340 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Ushbp1Q8R370 Snrk-203ENSMUST00000120173 4758 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Ushbp1Q8R370 Acsm4-201ENSMUST00000047045 2152 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Ushbp1Q8R370 Ppp1r16b-201ENSMUST00000045503 6408 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Ushbp1Q8R370 Asap1-217ENSMUST00000177371 6164 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Ushbp1Q8R370 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
Ushbp1Q8R370 Olfr95-202ENSMUST00000216318 4917 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
Ushbp1Q8R370 9230110C19Rik-201ENSMUST00000065291 1592 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Ushbp1Q8R370 Gm9361-201ENSMUST00000198695 1507 ntBASIC13.76□□□□□ -0.21
Ushbp1Q8R370 Cyp2j13-203ENSMUST00000107078 1493 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Ushbp1Q8R370 Stau1-201ENSMUST00000049412 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Ushbp1Q8R370 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Ushbp1Q8R370 Bean1-206ENSMUST00000213077 1373 ntAPPRIS ALT2 TSL 3 BASIC13.76□□□□□ -0.21
Ushbp1Q8R370 Ptpn2-203ENSMUST00000122412 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 180.5 ms