Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Celf1-202ENSMUST00000068726 7851 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
Sox9Q04887 Pcdha6-202ENSMUST00000193777 5367 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.38
Sox9Q04887 Kcnd3-203ENSMUST00000118360 2668 ntAPPRIS P4 TSL 5 BASIC12.71□□□□□ -0.38
Sox9Q04887 Zbtb49-202ENSMUST00000114113 2645 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
Sox9Q04887 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
Sox9Q04887 Pmp2-201ENSMUST00000029034 1408 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Sox9Q04887 Abcd1-201ENSMUST00000002084 3648 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sox9Q04887 Slc25a21-205ENSMUST00000217690 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sox9Q04887 Mfsd4b4-202ENSMUST00000178563 3523 ntTSL 5 BASIC12.7□□□□□ -0.38
Sox9Q04887 Hlcs-202ENSMUST00000163193 5371 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sox9Q04887 Myh14-203ENSMUST00000107900 6400 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
Sox9Q04887 Aida-201ENSMUST00000109166 4279 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sox9Q04887 Gm26635-201ENSMUST00000181077 3199 ntTSL 5 BASIC12.7□□□□□ -0.38
Sox9Q04887 Steap2-201ENSMUST00000015797 3657 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sox9Q04887 Gm19385-201ENSMUST00000214714 1813 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Sox9Q04887 Ggt6-201ENSMUST00000076443 1818 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sox9Q04887 Actr8-204ENSMUST00000224797 2328 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
Sox9Q04887 Krtap4-6-201ENSMUST00000100476 918 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
Sox9Q04887 Gtf2h5-202ENSMUST00000100955 879 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sox9Q04887 Gm25063-201ENSMUST00000104666 94 ntBASIC12.7□□□□□ -0.38
Sox9Q04887 Gm13263-201ENSMUST00000121271 838 ntBASIC12.7□□□□□ -0.38
Sox9Q04887 Gm11354-201ENSMUST00000121974 422 ntBASIC12.7□□□□□ -0.38
Sox9Q04887 Immp2l-202ENSMUST00000132121 1147 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Sox9Q04887 Gm16081-201ENSMUST00000155992 684 ntTSL 3 BASIC12.7□□□□□ -0.38
Sox9Q04887 Prss36-208ENSMUST00000156152 1132 ntTSL 5 BASIC12.7□□□□□ -0.38
Sox9Q04887 Spdye4a-202ENSMUST00000160502 1245 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Sox9Q04887 Ctdspl-202ENSMUST00000172464 798 ntAPPRIS ALT1 TSL 5 BASIC12.7□□□□□ -0.38
Sox9Q04887 4930535L15Rik-201ENSMUST00000175891 536 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Sox9Q04887 Ly6c1-202ENSMUST00000179762 838 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sox9Q04887 Gm27232-201ENSMUST00000184373 597 ntTSL 3 BASIC12.7□□□□□ -0.38
Sox9Q04887 Rbp2-202ENSMUST00000187905 611 ntAPPRIS P1 TSL 3 BASIC12.7□□□□□ -0.38
Sox9Q04887 Gm5100-201ENSMUST00000195631 589 ntBASIC12.7□□□□□ -0.38
Sox9Q04887 D5Ertd615e-203ENSMUST00000198493 1032 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Sox9Q04887 2010109P13Rik-201ENSMUST00000204605 392 ntBASIC12.7□□□□□ -0.38
Sox9Q04887 Gm44421-201ENSMUST00000205064 1221 ntBASIC12.7□□□□□ -0.38
Sox9Q04887 Gm18059-201ENSMUST00000208073 580 ntBASIC12.7□□□□□ -0.38
Sox9Q04887 CT485606.1-201ENSMUST00000213187 878 ntBASIC12.7□□□□□ -0.38
Sox9Q04887 AC155712.2-201ENSMUST00000220398 643 ntTSL 3 BASIC12.7□□□□□ -0.38
Sox9Q04887 Csnk2b-201ENSMUST00000025246 961 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sox9Q04887 4930488N24Rik-201ENSMUST00000188802 1527 ntBASIC12.7□□□□□ -0.38
Sox9Q04887 Gm44094-201ENSMUST00000204703 2030 ntBASIC12.7□□□□□ -0.38
Sox9Q04887 Elp4-202ENSMUST00000122965 3048 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sox9Q04887 Ifnar2-201ENSMUST00000023693 3047 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sox9Q04887 BC025446-201ENSMUST00000055719 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sox9Q04887 Ercc5-201ENSMUST00000027214 3907 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sox9Q04887 Pla2g4c-204ENSMUST00000167232 2154 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
Sox9Q04887 Pax6-201ENSMUST00000090391 2869 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sox9Q04887 Oprm1-215ENSMUST00000105607 2369 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sox9Q04887 Kcnn2-205ENSMUST00000183850 3546 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sox9Q04887 Tnk2-201ENSMUST00000115120 2794 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Sox9Q04887 Wnk1-203ENSMUST00000088644 11330 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Sox9Q04887 Eif4e3-201ENSMUST00000032151 2515 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sox9Q04887 Alg14-201ENSMUST00000039442 2037 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sox9Q04887 Miat-205ENSMUST00000182953 9163 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Sox9Q04887 Spock1-206ENSMUST00000189373 3128 ntTSL 5 BASIC12.69□□□□□ -0.38
Sox9Q04887 Gadl1-203ENSMUST00000121770 1763 ntAPPRIS P2 TSL 5 BASIC12.69□□□□□ -0.38
Sox9Q04887 Cfap161-201ENSMUST00000011298 1335 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sox9Q04887 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sox9Q04887 Zfp957-202ENSMUST00000161649 2751 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Sox9Q04887 Gm21987-201ENSMUST00000119704 456 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
Sox9Q04887 Gm12783-201ENSMUST00000121425 397 ntBASIC12.69□□□□□ -0.38
Sox9Q04887 Hcrtr1-204ENSMUST00000164887 1251 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Sox9Q04887 Gm37707-201ENSMUST00000195309 325 ntTSL 3 BASIC12.69□□□□□ -0.38
Sox9Q04887 Gm44158-201ENSMUST00000203881 505 ntBASIC12.69□□□□□ -0.38
Sox9Q04887 Gm45021-201ENSMUST00000204521 369 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Sox9Q04887 Gm44710-201ENSMUST00000208885 471 ntTSL 2 BASIC12.69□□□□□ -0.38
Sox9Q04887 Gm9661-201ENSMUST00000221611 1122 ntBASIC12.69□□□□□ -0.38
Sox9Q04887 Gm7959-201ENSMUST00000221823 1078 ntBASIC12.69□□□□□ -0.38
Sox9Q04887 AC165260.2-203ENSMUST00000224237 336 ntBASIC12.69□□□□□ -0.38
Sox9Q04887 Zfp319-201ENSMUST00000057717 7232 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sox9Q04887 Actg1-201ENSMUST00000062147 876 ntTSL 3 BASIC12.69□□□□□ -0.38
Sox9Q04887 Tmem220-202ENSMUST00000079077 1147 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sox9Q04887 Trim32-202ENSMUST00000107366 3191 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sox9Q04887 Qsox1-202ENSMUST00000111764 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sox9Q04887 Frmpd4-204ENSMUST00000112149 8456 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Sox9Q04887 4930465M20Rik-201ENSMUST00000130564 1446 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Sox9Q04887 Dusp19-201ENSMUST00000028384 1632 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sox9Q04887 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC12.69□□□□□ -0.38
Sox9Q04887 Gm12766-201ENSMUST00000140298 1823 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Sox9Q04887 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sox9Q04887 Ppp4r3b-202ENSMUST00000102856 2410 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Sox9Q04887 Map6-201ENSMUST00000068973 3430 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sox9Q04887 Rubcn-204ENSMUST00000119810 3371 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Sox9Q04887 Ddx23-201ENSMUST00000003450 3187 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Sox9Q04887 Ankrd34a-201ENSMUST00000058943 2583 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sox9Q04887 Gm26823-201ENSMUST00000181425 2361 ntTSL 5 BASIC12.69□□□□□ -0.38
Sox9Q04887 Tspan32-201ENSMUST00000009396 1582 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sox9Q04887 Pcdh10-201ENSMUST00000166126 7081 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Sox9Q04887 Kcnj11-205ENSMUST00000211674 3142 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
Sox9Q04887 Yeats2-201ENSMUST00000090052 5997 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sox9Q04887 Mob1a-202ENSMUST00000055261 4412 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sox9Q04887 Sp4-203ENSMUST00000222314 2677 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sox9Q04887 Gpr45-201ENSMUST00000114761 1546 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
Sox9Q04887 Kpna7-203ENSMUST00000116454 1500 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sox9Q04887 Wfdc8-201ENSMUST00000094351 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sox9Q04887 Clstn2-202ENSMUST00000162295 4174 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Sox9Q04887 Ttc8-202ENSMUST00000085109 2272 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sox9Q04887 Rnf133-202ENSMUST00000115354 1333 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
Sox9Q04887 0610010F05Rik-208ENSMUST00000180260 4128 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sox9Q04887 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 40.6 ms