Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Gm45338-201ENSMUST00000209198 820 ntTSL 5 BASIC10.52□□□□□ -0.73
Col8a1Q00780 Timm10b-210ENSMUST00000209588 373 ntTSL 3 BASIC10.52□□□□□ -0.73
Col8a1Q00780 AC153505.1-201ENSMUST00000218819 1071 ntBASIC10.52□□□□□ -0.73
Col8a1Q00780 AC159263.1-201ENSMUST00000220746 482 ntTSL 5 BASIC10.52□□□□□ -0.73
Col8a1Q00780 Tas2r126-201ENSMUST00000059534 930 ntAPPRIS P1 BASIC10.52□□□□□ -0.73
Col8a1Q00780 Aamdc-202ENSMUST00000072725 776 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
Col8a1Q00780 Hist1h3a-201ENSMUST00000091701 534 ntAPPRIS P1 BASIC10.52□□□□□ -0.73
Col8a1Q00780 A530072M11Rik-201ENSMUST00000151122 1852 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
Col8a1Q00780 Stpg2-202ENSMUST00000106239 2055 ntAPPRIS P1 TSL 5 BASIC10.52□□□□□ -0.73
Col8a1Q00780 Pianp-207ENSMUST00000162170 2053 ntAPPRIS P2 TSL 1 (best) BASIC10.52□□□□□ -0.73
Col8a1Q00780 Tmx2-203ENSMUST00000111665 2282 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Col8a1Q00780 D330041H03Rik-205ENSMUST00000181014 1903 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
Col8a1Q00780 Cpped1-201ENSMUST00000073371 1922 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
Col8a1Q00780 Ccdc183-201ENSMUST00000028309 1719 ntAPPRIS P1 TSL 5 BASIC10.52□□□□□ -0.73
Col8a1Q00780 Gjb5-201ENSMUST00000046498 1721 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Col8a1Q00780 Padi2-201ENSMUST00000030765 4774 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Col8a1Q00780 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC10.52□□□□□ -0.73
Col8a1Q00780 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC10.52□□□□□ -0.73
Col8a1Q00780 Evc2-201ENSMUST00000056365 4091 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Col8a1Q00780 Ubap2l-202ENSMUST00000064639 4073 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
Col8a1Q00780 Hdac10-201ENSMUST00000082197 2412 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Col8a1Q00780 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Col8a1Q00780 Muc1-201ENSMUST00000041142 2242 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Col8a1Q00780 Rapgef2-202ENSMUST00000118340 6544 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
Col8a1Q00780 Stk33-204ENSMUST00000121748 2295 ntAPPRIS P1 TSL 5 BASIC10.51□□□□□ -0.73
Col8a1Q00780 Spast-201ENSMUST00000024869 4672 ntAPPRIS P2 TSL 1 (best) BASIC10.51□□□□□ -0.73
Col8a1Q00780 Gm14752-201ENSMUST00000120719 2075 ntBASIC10.51□□□□□ -0.73
Col8a1Q00780 Art3-202ENSMUST00000117108 1408 ntAPPRIS ALT2 TSL 5 BASIC10.51□□□□□ -0.73
Col8a1Q00780 Art3-203ENSMUST00000118106 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC10.51□□□□□ -0.73
Col8a1Q00780 Gm18626-201ENSMUST00000221512 1409 ntBASIC10.51□□□□□ -0.73
Col8a1Q00780 Pde9a-203ENSMUST00000127929 1891 ntAPPRIS P2 TSL 1 (best) BASIC10.51□□□□□ -0.73
Col8a1Q00780 Ngly1-207ENSMUST00000224656 2329 ntAPPRIS ALT2 BASIC10.51□□□□□ -0.73
Col8a1Q00780 Zbtb7b-203ENSMUST00000107433 3650 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Col8a1Q00780 Pnpla5-201ENSMUST00000019012 1694 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Col8a1Q00780 Gm15477-201ENSMUST00000140578 2130 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
Col8a1Q00780 Nin-204ENSMUST00000169074 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC10.51□□□□□ -0.73
Col8a1Q00780 Sh3gl3-206ENSMUST00000179318 1489 ntTSL 5 BASIC10.51□□□□□ -0.73
Col8a1Q00780 Tmed9-203ENSMUST00000224741 1450 ntBASIC10.51□□□□□ -0.73
Col8a1Q00780 R3hdml-201ENSMUST00000109416 1094 ntAPPRIS P1 TSL 5 BASIC10.51□□□□□ -0.73
Col8a1Q00780 Zscan10-203ENSMUST00000117606 891 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
Col8a1Q00780 Gm11801-201ENSMUST00000117807 746 ntBASIC10.51□□□□□ -0.73
Col8a1Q00780 Gm13832-202ENSMUST00000151159 370 ntTSL 3 BASIC10.51□□□□□ -0.73
Col8a1Q00780 Gm27530-201ENSMUST00000184096 98 ntBASIC10.51□□□□□ -0.73
Col8a1Q00780 Gm29539-201ENSMUST00000188031 758 ntTSL 3 BASIC10.51□□□□□ -0.73
Col8a1Q00780 Gm18038-201ENSMUST00000197900 485 ntBASIC10.51□□□□□ -0.73
Col8a1Q00780 Gm43692-201ENSMUST00000198236 1062 ntBASIC10.51□□□□□ -0.73
Col8a1Q00780 Gm43634-201ENSMUST00000202671 675 ntTSL 3 BASIC10.51□□□□□ -0.73
Col8a1Q00780 Gm2517-201ENSMUST00000215651 348 ntBASIC10.51□□□□□ -0.73
Col8a1Q00780 AC154290.1-201ENSMUST00000223786 1240 ntBASIC10.51□□□□□ -0.73
Col8a1Q00780 Olfr354-201ENSMUST00000068475 1084 ntAPPRIS P1 BASIC10.51□□□□□ -0.73
Col8a1Q00780 Actg-ps1-201ENSMUST00000099636 1124 ntBASIC10.51□□□□□ -0.73
Col8a1Q00780 Dnajc13-201ENSMUST00000035170 8012 ntAPPRIS P1 TSL 5 BASIC10.51□□□□□ -0.73
Col8a1Q00780 BC027072-201ENSMUST00000057405 5004 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Col8a1Q00780 Wwox-201ENSMUST00000004756 2244 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Col8a1Q00780 Lrrc8e-201ENSMUST00000053035 3878 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Col8a1Q00780 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC10.51□□□□□ -0.73
Col8a1Q00780 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC10.51□□□□□ -0.73
Col8a1Q00780 Il12rb1-205ENSMUST00000212657 2741 ntAPPRIS ALT2 TSL 5 BASIC10.51□□□□□ -0.73
Col8a1Q00780 Hdgfl2-201ENSMUST00000002911 2264 ntAPPRIS ALT2 TSL 1 (best) BASIC10.51□□□□□ -0.73
Col8a1Q00780 Luc7l3-202ENSMUST00000107820 3478 ntAPPRIS P1 TSL 5 BASIC10.51□□□□□ -0.73
Col8a1Q00780 Ccdc42os-201ENSMUST00000148019 1335 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
Col8a1Q00780 Rai1-203ENSMUST00000102688 6921 ntAPPRIS P1 TSL 5 BASIC10.51□□□□□ -0.73
Col8a1Q00780 Dnmt3b-208ENSMUST00000109772 4015 ntAPPRIS ALT2 TSL 1 (best) BASIC10.51□□□□□ -0.73
Col8a1Q00780 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC10.51□□□□□ -0.73
Col8a1Q00780 Slc6a21-206ENSMUST00000210861 2838 ntAPPRIS P1 TSL 5 BASIC10.51□□□□□ -0.73
Col8a1Q00780 Tubb2a-201ENSMUST00000056427 1610 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Col8a1Q00780 Fgd3-203ENSMUST00000110087 4698 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Col8a1Q00780 Grid1-201ENSMUST00000043349 5720 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Col8a1Q00780 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC10.5□□□□□ -0.73
Col8a1Q00780 Nrg1-210ENSMUST00000208488 2403 ntAPPRIS P5 TSL 5 BASIC10.5□□□□□ -0.73
Col8a1Q00780 Tmem51os1-203ENSMUST00000150202 1667 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
Col8a1Q00780 Rsrc1-206ENSMUST00000162036 1406 ntAPPRIS P2 TSL 5 BASIC10.5□□□□□ -0.73
Col8a1Q00780 Gm30725-201ENSMUST00000195170 1419 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
Col8a1Q00780 Galnt6-201ENSMUST00000052069 3798 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Col8a1Q00780 Lmln-201ENSMUST00000023497 6147 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Col8a1Q00780 Sh3glb2-202ENSMUST00000100215 1749 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
Col8a1Q00780 Ms4a15-201ENSMUST00000087923 1713 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Col8a1Q00780 Lingo1-202ENSMUST00000114247 2287 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
Col8a1Q00780 Gm853-201ENSMUST00000023884 2314 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Col8a1Q00780 Lrrc8c-201ENSMUST00000067924 6976 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Col8a1Q00780 Gm43677-201ENSMUST00000198098 2378 ntBASIC10.5□□□□□ -0.73
Col8a1Q00780 Serf2-202ENSMUST00000110615 876 ntTSL 2 BASIC10.5□□□□□ -0.73
Col8a1Q00780 Tspan5-202ENSMUST00000119993 2107 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
Col8a1Q00780 Spata3-207ENSMUST00000135440 732 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
Col8a1Q00780 Gm23218-201ENSMUST00000158124 276 ntBASIC10.5□□□□□ -0.73
Col8a1Q00780 Nipsnap3a-204ENSMUST00000188045 1099 ntAPPRIS P2 TSL 1 (best) BASIC10.5□□□□□ -0.73
Col8a1Q00780 Gm9230-201ENSMUST00000188228 532 ntBASIC10.5□□□□□ -0.73
Col8a1Q00780 Gm17827-201ENSMUST00000211825 742 ntBASIC10.5□□□□□ -0.73
Col8a1Q00780 Mt3-202ENSMUST00000211915 440 ntTSL 3 BASIC10.5□□□□□ -0.73
Col8a1Q00780 AC165260.3-202ENSMUST00000224550 1031 ntBASIC10.5□□□□□ -0.73
Col8a1Q00780 Fam151b-201ENSMUST00000040106 1152 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Col8a1Q00780 Spata3-201ENSMUST00000052854 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC10.5□□□□□ -0.73
Col8a1Q00780 Mir339-201ENSMUST00000083659 96 ntBASIC10.5□□□□□ -0.73
Col8a1Q00780 Atxn7l3b-201ENSMUST00000099276 3566 ntAPPRIS P1 BASIC10.5□□□□□ -0.73
Col8a1Q00780 AC123619.2-202ENSMUST00000225097 1568 ntBASIC10.5□□□□□ -0.73
Col8a1Q00780 Gngt2-201ENSMUST00000036088 1587 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Col8a1Q00780 Gm5466-201ENSMUST00000119395 1890 ntBASIC10.5□□□□□ -0.73
Col8a1Q00780 Srp54a-202ENSMUST00000220578 4498 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Col8a1Q00780 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC10.5□□□□□ -0.73
Col8a1Q00780 Gm37795-201ENSMUST00000194216 2459 ntBASIC10.5□□□□□ -0.73
Retrieved 100 of 76,532 protein–RNA pairs in 46.1 ms