Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Gm36940-201ENSMUST00000194281 2036 ntBASIC10.03□□□□□ -0.8
Sdc1P18828 Gm42550-201ENSMUST00000201553 960 ntBASIC10.03□□□□□ -0.8
Sdc1P18828 Gm44882-201ENSMUST00000205702 802 ntBASIC10.03□□□□□ -0.8
Sdc1P18828 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC10.03□□□□□ -0.8
Sdc1P18828 Vmo1-201ENSMUST00000021179 672 ntAPPRIS P1 TSL 2 BASIC10.03□□□□□ -0.8
Sdc1P18828 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Sdc1P18828 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Sdc1P18828 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Sdc1P18828 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC10.03□□□□□ -0.8
Sdc1P18828 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC10.03□□□□□ -0.8
Sdc1P18828 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
Sdc1P18828 Gm43937-201ENSMUST00000204640 3122 ntBASIC10.03□□□□□ -0.8
Sdc1P18828 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Sdc1P18828 Megf8-201ENSMUST00000128119 10040 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Sdc1P18828 Pla2g7-201ENSMUST00000024706 2097 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Sdc1P18828 Olfr582-202ENSMUST00000210119 1787 ntAPPRIS P1 TSL 5 BASIC10.03□□□□□ -0.8
Sdc1P18828 Rnf220-201ENSMUST00000030439 3029 ntAPPRIS P3 TSL 1 (best) BASIC10.03□□□□□ -0.8
Sdc1P18828 Gm20658-201ENSMUST00000175871 1489 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
Sdc1P18828 Prex1-202ENSMUST00000099080 5818 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
Sdc1P18828 Gm43931-201ENSMUST00000204817 2870 ntBASIC10.03□□□□□ -0.8
Sdc1P18828 Ttc30a2-201ENSMUST00000099995 2431 ntAPPRIS P1 BASIC10.03□□□□□ -0.8
Sdc1P18828 Cbl-211ENSMUST00000206720 11372 ntAPPRIS P2 TSL 1 (best) BASIC10.03□□□□□ -0.8
Sdc1P18828 Mafb-201ENSMUST00000099126 3363 ntAPPRIS P1 BASIC10.03□□□□□ -0.8
Sdc1P18828 Prc1-211ENSMUST00000174199 2128 ntTSL 5 BASIC10.03□□□□□ -0.8
Sdc1P18828 Slc10a6-201ENSMUST00000031263 2124 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Sdc1P18828 Gm45449-201ENSMUST00000211485 1960 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
Sdc1P18828 Myo18a-222ENSMUST00000168348 6582 ntAPPRIS ALT2 TSL 1 (best) BASIC10.03□□□□□ -0.8
Sdc1P18828 Mrrf-201ENSMUST00000028250 2623 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Sdc1P18828 AC174678.2-201ENSMUST00000156420 3275 ntAPPRIS P1 TSL 5 BASIC10.02□□□□□ -0.8
Sdc1P18828 Eef2k-201ENSMUST00000047875 6580 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.8
Sdc1P18828 Astl-201ENSMUST00000059839 2377 ntAPPRIS P3 TSL 1 (best) BASIC10.02□□□□□ -0.8
Sdc1P18828 Pcp4l1-201ENSMUST00000111332 1577 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
Sdc1P18828 Ptbp1-202ENSMUST00000095457 2598 ntAPPRIS ALT2 TSL 1 (best) BASIC10.02□□□□□ -0.81
Sdc1P18828 Tiam1-214ENSMUST00000164263 3569 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
Sdc1P18828 Brd1-202ENSMUST00000109380 3259 ntAPPRIS P1 TSL 5 BASIC10.02□□□□□ -0.81
Sdc1P18828 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
Sdc1P18828 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
Sdc1P18828 Apoc1-202ENSMUST00000108451 532 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
Sdc1P18828 Phlda2-201ENSMUST00000010904 757 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
Sdc1P18828 Zmynd11-203ENSMUST00000110634 3824 ntAPPRIS P1 TSL 5 BASIC10.02□□□□□ -0.81
Sdc1P18828 Gm13365-201ENSMUST00000121188 973 ntBASIC10.02□□□□□ -0.81
Sdc1P18828 Ndufa2-201ENSMUST00000014438 572 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
Sdc1P18828 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC10.02□□□□□ -0.81
Sdc1P18828 Gm24158-201ENSMUST00000175263 71 ntBASIC10.02□□□□□ -0.81
Sdc1P18828 Nanos3-202ENSMUST00000210202 692 ntAPPRIS ALT2 TSL 1 (best) BASIC10.02□□□□□ -0.81
Sdc1P18828 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC10.02□□□□□ -0.81
Sdc1P18828 B230303A05Rik-204ENSMUST00000223006 748 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
Sdc1P18828 Bcdin3d-201ENSMUST00000040313 1271 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
Sdc1P18828 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC10.02□□□□□ -0.81
Sdc1P18828 Olfr311-201ENSMUST00000071625 927 ntAPPRIS P1 BASIC10.02□□□□□ -0.81
Sdc1P18828 Gm43720-201ENSMUST00000159067 6411 ntAPPRIS P1 TSL 5 BASIC10.02□□□□□ -0.81
Sdc1P18828 Cyp2s1-202ENSMUST00000108395 3161 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
Sdc1P18828 Magi1-203ENSMUST00000093769 4598 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
Sdc1P18828 Zbtb40-201ENSMUST00000049583 7192 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
Sdc1P18828 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
Sdc1P18828 Ccdc62-201ENSMUST00000094320 3924 ntAPPRIS P1 TSL 5 BASIC10.02□□□□□ -0.81
Sdc1P18828 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
Sdc1P18828 Raph1-204ENSMUST00000140485 10024 ntAPPRIS P2 TSL 5 BASIC10.02□□□□□ -0.81
Sdc1P18828 Gm21136-201ENSMUST00000186812 2575 ntBASIC10.02□□□□□ -0.81
Sdc1P18828 Gm6605-201ENSMUST00000031488 2574 ntBASIC10.02□□□□□ -0.81
Sdc1P18828 Aar2-202ENSMUST00000109570 2766 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
Sdc1P18828 Ccnk-202ENSMUST00000221167 2789 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
Sdc1P18828 Tonsl-207ENSMUST00000168185 4235 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
Sdc1P18828 Dao-202ENSMUST00000112292 2057 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
Sdc1P18828 Smim1-214ENSMUST00000182191 3535 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
Sdc1P18828 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC10.01□□□□□ -0.81
Sdc1P18828 Gdap2-201ENSMUST00000029459 3008 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Sdc1P18828 Irak4-202ENSMUST00000109248 3437 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
Sdc1P18828 Tollip-204ENSMUST00000151890 1753 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
Sdc1P18828 Pou1f1-201ENSMUST00000004964 1773 ntTSL 5 BASIC10.01□□□□□ -0.81
Sdc1P18828 Arhgef4-204ENSMUST00000159747 6514 ntAPPRIS ALT2 TSL 5 BASIC10.01□□□□□ -0.81
Sdc1P18828 Sord-201ENSMUST00000110551 2352 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Sdc1P18828 AC108858.2-201ENSMUST00000228186 1425 ntBASIC10.01□□□□□ -0.81
Sdc1P18828 Gcc1-202ENSMUST00000090511 4650 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Sdc1P18828 Bms1-201ENSMUST00000032237 4345 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Sdc1P18828 Ablim1-213ENSMUST00000111559 3184 ntAPPRIS ALT2 TSL 5 BASIC10.01□□□□□ -0.81
Sdc1P18828 Tex2-202ENSMUST00000103070 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC10.01□□□□□ -0.81
Sdc1P18828 Papln-202ENSMUST00000121733 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC10.01□□□□□ -0.81
Sdc1P18828 Gm8378-202ENSMUST00000167777 2624 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
Sdc1P18828 Rad17-201ENSMUST00000022136 2839 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Sdc1P18828 Rangap1-202ENSMUST00000170134 3002 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Sdc1P18828 Kat7-203ENSMUST00000103159 3248 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
Sdc1P18828 Gm22065-201ENSMUST00000103753 110 ntBASIC10.01□□□□□ -0.81
Sdc1P18828 Gm22066-201ENSMUST00000103761 110 ntBASIC10.01□□□□□ -0.81
Sdc1P18828 Gm24932-201ENSMUST00000103763 110 ntBASIC10.01□□□□□ -0.81
Sdc1P18828 Gm24115-201ENSMUST00000103799 110 ntBASIC10.01□□□□□ -0.81
Sdc1P18828 Gm22190-201ENSMUST00000103827 110 ntBASIC10.01□□□□□ -0.81
Sdc1P18828 Gm22191-201ENSMUST00000103831 110 ntBASIC10.01□□□□□ -0.81
Sdc1P18828 Gm24721-201ENSMUST00000103849 110 ntBASIC10.01□□□□□ -0.81
Sdc1P18828 Gm28018-201ENSMUST00000103869 110 ntBASIC10.01□□□□□ -0.81
Sdc1P18828 Gm26399-201ENSMUST00000103937 110 ntBASIC10.01□□□□□ -0.81
Sdc1P18828 Derl2-202ENSMUST00000108523 884 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
Sdc1P18828 Gm16202-201ENSMUST00000117532 544 ntBASIC10.01□□□□□ -0.81
Sdc1P18828 Hmgcll1-202ENSMUST00000117981 1189 ntTSL 5 BASIC10.01□□□□□ -0.81
Sdc1P18828 Mir1895-201ENSMUST00000122615 79 ntBASIC10.01□□□□□ -0.81
Sdc1P18828 Gm25349-201ENSMUST00000177728 110 ntBASIC10.01□□□□□ -0.81
Sdc1P18828 Gm23616-201ENSMUST00000177797 110 ntBASIC10.01□□□□□ -0.81
Sdc1P18828 Gm25871-201ENSMUST00000177816 110 ntBASIC10.01□□□□□ -0.81
Sdc1P18828 Gm24752-201ENSMUST00000178240 110 ntBASIC10.01□□□□□ -0.81
Sdc1P18828 Gm24496-201ENSMUST00000178287 110 ntBASIC10.01□□□□□ -0.81
Retrieved 100 of 76,532 protein–RNA pairs in 41.9 ms