Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gm37596-201ENSMUST00000193565 1021 ntAPPRIS P1 BASIC10.15□□□□□ -0.78
Hmgb3O54879 B9d2-203ENSMUST00000205658 995 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Hmgb3O54879 Gm44771-201ENSMUST00000206975 626 ntBASIC10.15□□□□□ -0.78
Hmgb3O54879 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
Hmgb3O54879 Gm18636-201ENSMUST00000218846 1066 ntBASIC10.15□□□□□ -0.78
Hmgb3O54879 Cyct-201ENSMUST00000028430 655 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Hmgb3O54879 Armc5-201ENSMUST00000044660 3834 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Hmgb3O54879 Smarcc2-202ENSMUST00000099131 4562 ntAPPRIS ALT2 TSL 1 (best) BASIC10.15□□□□□ -0.78
Hmgb3O54879 Kansl1-201ENSMUST00000018556 5061 ntAPPRIS P2 TSL 1 (best) BASIC10.15□□□□□ -0.78
Hmgb3O54879 Sptbn1-203ENSMUST00000102838 9107 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
Hmgb3O54879 Hjurp-206ENSMUST00000147393 2030 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
Hmgb3O54879 Brd3-210ENSMUST00000164296 2791 ntAPPRIS P3 TSL 5 BASIC10.15□□□□□ -0.78
Hmgb3O54879 Gm16070-201ENSMUST00000127328 5210 ntTSL 2 BASIC10.15□□□□□ -0.78
Hmgb3O54879 Topbp1-201ENSMUST00000035164 5224 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Hmgb3O54879 Haus8-202ENSMUST00000110071 1452 ntAPPRIS P3 TSL 1 (best) BASIC10.15□□□□□ -0.78
Hmgb3O54879 Yars-201ENSMUST00000106054 2909 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Hmgb3O54879 Vps18-201ENSMUST00000037280 4054 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.79
Hmgb3O54879 Mgmt-201ENSMUST00000081510 2894 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.79
Hmgb3O54879 Tmem33-201ENSMUST00000037918 6247 ntAPPRIS P3 TSL 1 (best) BASIC10.15□□□□□ -0.79
Hmgb3O54879 Il2rg-201ENSMUST00000033664 1670 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.79
Hmgb3O54879 Ccnc-203ENSMUST00000108240 1406 ntTSL 1 (best) BASIC10.15□□□□□ -0.79
Hmgb3O54879 Serpina1f-202ENSMUST00000117053 2830 ntTSL 1 (best) BASIC10.15□□□□□ -0.79
Hmgb3O54879 F3-201ENSMUST00000029771 1872 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.79
Hmgb3O54879 Slx4ip-201ENSMUST00000028737 2556 ntTSL 1 (best) BASIC10.15□□□□□ -0.79
Hmgb3O54879 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC10.15□□□□□ -0.79
Hmgb3O54879 Mat2b-202ENSMUST00000101347 2053 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
Hmgb3O54879 Snx29-203ENSMUST00000122168 2096 ntTSL 5 BASIC10.14□□□□□ -0.79
Hmgb3O54879 Tubd1-201ENSMUST00000020821 2070 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
Hmgb3O54879 Becn1-205ENSMUST00000130916 4365 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Hmgb3O54879 Slc25a22-203ENSMUST00000106007 2546 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Hmgb3O54879 Vwf-201ENSMUST00000100941 1807 ntTSL 5 BASIC10.14□□□□□ -0.79
Hmgb3O54879 Kcnh5-201ENSMUST00000042299 4058 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Hmgb3O54879 Alg12-201ENSMUST00000043087 1793 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
Hmgb3O54879 Spock3-203ENSMUST00000118003 2860 ntAPPRIS P3 TSL 5 BASIC10.14□□□□□ -0.79
Hmgb3O54879 A930024N18Rik-201ENSMUST00000181251 3955 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
Hmgb3O54879 4732414G09Rik-201ENSMUST00000156243 2422 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
Hmgb3O54879 Chrdl1-204ENSMUST00000166406 2605 ntAPPRIS P3 TSL 1 (best) BASIC10.14□□□□□ -0.79
Hmgb3O54879 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Hmgb3O54879 Pde4d-201ENSMUST00000074103 2167 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
Hmgb3O54879 Gtf2ird1-203ENSMUST00000100650 3487 ntAPPRIS ALT2 TSL 1 (best) BASIC10.14□□□□□ -0.79
Hmgb3O54879 Neat1-202ENSMUST00000174287 3004 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
Hmgb3O54879 Epb41-202ENSMUST00000054917 4948 ntAPPRIS ALT2 TSL 5 BASIC10.14□□□□□ -0.79
Hmgb3O54879 Spata7-203ENSMUST00000101146 1913 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
Hmgb3O54879 Ankrd42-201ENSMUST00000056106 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC10.14□□□□□ -0.79
Hmgb3O54879 R3hdml-201ENSMUST00000109416 1094 ntAPPRIS P1 TSL 5 BASIC10.14□□□□□ -0.79
Hmgb3O54879 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Hmgb3O54879 Sec11a-202ENSMUST00000117383 1094 ntTSL 2 BASIC10.14□□□□□ -0.79
Hmgb3O54879 Gm16202-201ENSMUST00000117532 544 ntBASIC10.14□□□□□ -0.79
Hmgb3O54879 Mvk-203ENSMUST00000124260 1051 ntTSL 5 BASIC10.14□□□□□ -0.79
Hmgb3O54879 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Hmgb3O54879 Gm11851-201ENSMUST00000132219 692 ntTSL 5 BASIC10.14□□□□□ -0.79
Hmgb3O54879 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC10.14□□□□□ -0.79
Hmgb3O54879 Gm26602-201ENSMUST00000181321 285 ntAPPRIS P1 BASIC10.14□□□□□ -0.79
Hmgb3O54879 1010001B22Rik-201ENSMUST00000181488 589 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
Hmgb3O54879 Gm26808-201ENSMUST00000181569 411 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
Hmgb3O54879 Gm29456-201ENSMUST00000189894 768 ntTSL 3 BASIC10.14□□□□□ -0.79
Hmgb3O54879 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC10.14□□□□□ -0.79
Hmgb3O54879 Jakmip1-215ENSMUST00000212047 1191 ntTSL 5 BASIC10.14□□□□□ -0.79
Hmgb3O54879 AC153506.3-201ENSMUST00000219287 1029 ntTSL 5 BASIC10.14□□□□□ -0.79
Hmgb3O54879 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Hmgb3O54879 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Hmgb3O54879 Olfr272-201ENSMUST00000051600 962 ntAPPRIS P1 BASIC10.14□□□□□ -0.79
Hmgb3O54879 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
Hmgb3O54879 Myoz3-201ENSMUST00000056533 870 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Hmgb3O54879 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Hmgb3O54879 Dcaf11-203ENSMUST00000117701 2311 ntAPPRIS ALT2 TSL 5 BASIC10.14□□□□□ -0.79
Hmgb3O54879 Tsku-203ENSMUST00000165257 2514 ntAPPRIS P1 TSL 2 BASIC10.14□□□□□ -0.79
Hmgb3O54879 Rcor3-202ENSMUST00000110849 3791 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
Hmgb3O54879 Lnx1-201ENSMUST00000039744 2727 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
Hmgb3O54879 Dnmt3l-201ENSMUST00000000746 1676 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Hmgb3O54879 Polr3b-201ENSMUST00000077175 4975 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Hmgb3O54879 Bop1-201ENSMUST00000023217 2476 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Hmgb3O54879 Prdm16-204ENSMUST00000105636 8426 ntAPPRIS ALT2 TSL 1 (best) BASIC10.14□□□□□ -0.79
Hmgb3O54879 Prdm16-202ENSMUST00000070313 8429 ntAPPRIS ALT2 TSL 1 (best) BASIC10.14□□□□□ -0.79
Hmgb3O54879 Zbtb42-201ENSMUST00000169593 3478 ntAPPRIS P1 TSL 2 BASIC10.14□□□□□ -0.79
Hmgb3O54879 Slc36a1-202ENSMUST00000108867 1611 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Hmgb3O54879 Spty2d1-201ENSMUST00000061639 5223 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Hmgb3O54879 6030458C11Rik-204ENSMUST00000228177 3156 ntBASIC10.14□□□□□ -0.79
Hmgb3O54879 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Hmgb3O54879 Cyp8b1-201ENSMUST00000062474 1950 ntAPPRIS P1 BASIC10.14□□□□□ -0.79
Hmgb3O54879 Cflar-202ENSMUST00000097722 1771 ntAPPRIS ALT2 TSL 5 BASIC10.14□□□□□ -0.79
Hmgb3O54879 Chchd3-201ENSMUST00000066379 1550 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Hmgb3O54879 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Hmgb3O54879 Yae1d1-204ENSMUST00000222796 1382 ntTSL 5 BASIC10.14□□□□□ -0.79
Hmgb3O54879 Serhl-201ENSMUST00000078218 1371 ntAPPRIS P2 TSL 1 (best) BASIC10.14□□□□□ -0.79
Hmgb3O54879 Tmeff2-201ENSMUST00000081851 3343 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Hmgb3O54879 Actb-201ENSMUST00000100497 1920 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Hmgb3O54879 Ttc17-203ENSMUST00000111237 4409 ntAPPRIS P1 TSL 5 BASIC10.13□□□□□ -0.79
Hmgb3O54879 Smpd4-206ENSMUST00000163997 1722 ntTSL 5 BASIC10.13□□□□□ -0.79
Hmgb3O54879 Mamld1-201ENSMUST00000082088 4796 ntAPPRIS P4 TSL 5 BASIC10.13□□□□□ -0.79
Hmgb3O54879 B3glct-201ENSMUST00000100404 4570 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Hmgb3O54879 Tekt4-201ENSMUST00000025002 1532 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Hmgb3O54879 Plpbp-205ENSMUST00000209856 3954 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
Hmgb3O54879 Rnf214-208ENSMUST00000161187 2847 ntAPPRIS ALT2 TSL 1 (best) BASIC10.13□□□□□ -0.79
Hmgb3O54879 Igsf9-201ENSMUST00000052629 4133 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Hmgb3O54879 Klhdc7a-201ENSMUST00000105031 7807 ntAPPRIS P1 BASIC10.13□□□□□ -0.79
Hmgb3O54879 Gas8-201ENSMUST00000093043 1681 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Hmgb3O54879 Sfxn3-201ENSMUST00000062213 2966 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Hmgb3O54879 Gpr12-203ENSMUST00000197431 1455 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Hmgb3O54879 Alg14-201ENSMUST00000039442 2037 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Retrieved 100 of 76,532 protein–RNA pairs in 117.5 ms