Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Foxp1-228ENSMUST00000177307 2121 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Trim3Q9R1R2 Gm15594-201ENSMUST00000137958 2215 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Trim3Q9R1R2 Usp16-201ENSMUST00000026710 3205 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim3Q9R1R2 Hltf-201ENSMUST00000002502 4955 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim3Q9R1R2 Zc3h12d-201ENSMUST00000039484 4092 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim3Q9R1R2 2410002F23Rik-205ENSMUST00000107949 3610 ntAPPRIS P2 TSL 2 BASIC11.61□□□□□ -0.55
Trim3Q9R1R2 Plod3-201ENSMUST00000004968 3280 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim3Q9R1R2 Rps6kb1-202ENSMUST00000058286 3250 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Trim3Q9R1R2 Trappc9-204ENSMUST00000170633 4688 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim3Q9R1R2 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim3Q9R1R2 Bdnf-205ENSMUST00000111045 3973 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim3Q9R1R2 Olfr56-204ENSMUST00000203149 1808 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim3Q9R1R2 Psmd9-201ENSMUST00000100729 2597 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim3Q9R1R2 Preb-201ENSMUST00000074840 6300 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim3Q9R1R2 Gm43051-201ENSMUST00000201096 2678 ntBASIC11.61□□□□□ -0.55
Trim3Q9R1R2 Daam2-202ENSMUST00000224595 1926 ntBASIC11.61□□□□□ -0.55
Trim3Q9R1R2 Grm5-201ENSMUST00000107263 3516 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim3Q9R1R2 Upk3bl-202ENSMUST00000111137 1119 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim3Q9R1R2 Gm14921-201ENSMUST00000118643 908 ntBASIC11.61□□□□□ -0.55
Trim3Q9R1R2 Fzr1-202ENSMUST00000118812 1215 ntTSL 5 BASIC11.61□□□□□ -0.55
Trim3Q9R1R2 Gm15351-201ENSMUST00000123920 419 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Trim3Q9R1R2 AI480526-203ENSMUST00000160099 1017 ntTSL 2 BASIC11.61□□□□□ -0.55
Trim3Q9R1R2 Tead1-207ENSMUST00000165036 1248 ntTSL 5 BASIC11.61□□□□□ -0.55
Trim3Q9R1R2 Tead1-212ENSMUST00000171197 1074 ntTSL 5 BASIC11.61□□□□□ -0.55
Trim3Q9R1R2 Mir8109-201ENSMUST00000184375 117 ntBASIC11.61□□□□□ -0.55
Trim3Q9R1R2 Gm43179-201ENSMUST00000198797 275 ntBASIC11.61□□□□□ -0.55
Trim3Q9R1R2 Recql-201ENSMUST00000032370 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim3Q9R1R2 Olfr272-201ENSMUST00000051600 962 ntAPPRIS P1 BASIC11.61□□□□□ -0.55
Trim3Q9R1R2 Slc26a6-201ENSMUST00000098376 2402 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
Trim3Q9R1R2 Pdss2-202ENSMUST00000159139 1467 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Trim3Q9R1R2 Il2rg-201ENSMUST00000033664 1670 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim3Q9R1R2 Cd163l1-203ENSMUST00000209398 3437 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim3Q9R1R2 Tcf4-205ENSMUST00000114980 2192 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
Trim3Q9R1R2 Sun2-201ENSMUST00000046259 3804 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim3Q9R1R2 Zfp433-202ENSMUST00000200889 2384 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim3Q9R1R2 Gm32687-201ENSMUST00000220314 2379 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim3Q9R1R2 Oprd1-201ENSMUST00000056336 4021 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim3Q9R1R2 Psd2-201ENSMUST00000115716 4607 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim3Q9R1R2 Tmcc2-206ENSMUST00000142609 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim3Q9R1R2 Sh2d7-202ENSMUST00000118413 1316 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trim3Q9R1R2 Tekt3-201ENSMUST00000035732 1748 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trim3Q9R1R2 Gm2420-201ENSMUST00000119864 2149 ntBASIC11.6□□□□□ -0.55
Trim3Q9R1R2 Kctd18-210ENSMUST00000164963 2114 ntTSL 5 BASIC11.6□□□□□ -0.55
Trim3Q9R1R2 Mtr-201ENSMUST00000099856 8294 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trim3Q9R1R2 Dnajc12-201ENSMUST00000043317 3025 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trim3Q9R1R2 Tm9sf2-201ENSMUST00000026624 3107 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trim3Q9R1R2 Fbn2-201ENSMUST00000025497 10480 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
Trim3Q9R1R2 Cux1-204ENSMUST00000175975 10945 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trim3Q9R1R2 Zcchc11-202ENSMUST00000097925 5865 ntAPPRIS ALT2 TSL 5 BASIC11.6□□□□□ -0.55
Trim3Q9R1R2 Foxj3-202ENSMUST00000106310 4660 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trim3Q9R1R2 Asrgl1-201ENSMUST00000049948 4195 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trim3Q9R1R2 Cyb561d1-201ENSMUST00000065664 4058 ntAPPRIS ALT1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trim3Q9R1R2 Hdac5-202ENSMUST00000107150 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trim3Q9R1R2 1700001L05Rik-201ENSMUST00000100370 2270 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Trim3Q9R1R2 Sptbn2-201ENSMUST00000008991 8251 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trim3Q9R1R2 Gm10451-201ENSMUST00000101281 1598 ntTSL 2 BASIC11.6□□□□□ -0.55
Trim3Q9R1R2 Plcb2-206ENSMUST00000159756 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trim3Q9R1R2 Blvrb-202ENSMUST00000108357 782 ntTSL 2 BASIC11.6□□□□□ -0.55
Trim3Q9R1R2 Phlda2-201ENSMUST00000010904 757 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trim3Q9R1R2 Gm12502-201ENSMUST00000120197 444 ntBASIC11.6□□□□□ -0.55
Trim3Q9R1R2 Gm16302-201ENSMUST00000159268 428 ntTSL 3 BASIC11.6□□□□□ -0.55
Trim3Q9R1R2 Fhit-206ENSMUST00000162278 981 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trim3Q9R1R2 Gm29396-201ENSMUST00000185659 716 ntBASIC11.6□□□□□ -0.55
Trim3Q9R1R2 2900093K20Rik-201ENSMUST00000190930 567 ntBASIC11.6□□□□□ -0.55
Trim3Q9R1R2 Gm38114-201ENSMUST00000191877 1232 ntBASIC11.6□□□□□ -0.55
Trim3Q9R1R2 Gm43755-201ENSMUST00000200001 408 ntTSL 5 BASIC11.6□□□□□ -0.55
Trim3Q9R1R2 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC11.6□□□□□ -0.55
Trim3Q9R1R2 Svip-203ENSMUST00000209193 487 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Trim3Q9R1R2 Stambp-ps1-201ENSMUST00000209280 1208 ntBASIC11.6□□□□□ -0.55
Trim3Q9R1R2 Gm18935-201ENSMUST00000212692 664 ntBASIC11.6□□□□□ -0.55
Trim3Q9R1R2 AC156504.2-201ENSMUST00000213800 711 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Trim3Q9R1R2 Gm9803-202ENSMUST00000216543 456 ntTSL 5 BASIC11.6□□□□□ -0.55
Trim3Q9R1R2 AC162938.2-203ENSMUST00000216604 1134 ntTSL 5 BASIC11.6□□□□□ -0.55
Trim3Q9R1R2 Pcgf5-203ENSMUST00000224679 1269 ntAPPRIS P5 BASIC11.6□□□□□ -0.55
Trim3Q9R1R2 Ndufb3-201ENSMUST00000027193 763 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trim3Q9R1R2 Gm17383-201ENSMUST00000078739 1041 ntBASIC11.6□□□□□ -0.55
Trim3Q9R1R2 Espn-201ENSMUST00000030785 3406 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trim3Q9R1R2 Rbm4-206ENSMUST00000180248 2610 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trim3Q9R1R2 Pcdh15-238ENSMUST00000193739 5034 ntAPPRIS ALT2 TSL 5 BASIC11.6□□□□□ -0.55
Trim3Q9R1R2 Tmem8b-201ENSMUST00000107864 4726 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
Trim3Q9R1R2 Hook2-204ENSMUST00000210326 3080 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Trim3Q9R1R2 Slc4a3-202ENSMUST00000124341 7182 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trim3Q9R1R2 Gm6992-201ENSMUST00000217973 1607 ntBASIC11.6□□□□□ -0.55
Trim3Q9R1R2 Megf11-201ENSMUST00000068967 6680 ntTSL 2 BASIC11.6□□□□□ -0.55
Trim3Q9R1R2 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trim3Q9R1R2 Cd74-202ENSMUST00000097563 1410 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trim3Q9R1R2 Gm8228-201ENSMUST00000189949 2192 ntBASIC11.6□□□□□ -0.55
Trim3Q9R1R2 Rapgef3-205ENSMUST00000129223 3750 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Trim3Q9R1R2 Tjp3-205ENSMUST00000219479 2901 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Trim3Q9R1R2 Wars-201ENSMUST00000109848 2831 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Trim3Q9R1R2 Osgepl1-201ENSMUST00000027265 1868 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Trim3Q9R1R2 Csrnp2-201ENSMUST00000061457 4126 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Trim3Q9R1R2 Thrb-203ENSMUST00000091471 1758 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Trim3Q9R1R2 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Trim3Q9R1R2 Frmd4a-202ENSMUST00000091497 6208 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.55
Trim3Q9R1R2 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Trim3Q9R1R2 Tmeff2-201ENSMUST00000081851 3343 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Trim3Q9R1R2 Rufy2-203ENSMUST00000122231 2664 ntTSL 5 BASIC11.59□□□□□ -0.55
Trim3Q9R1R2 Ralgps2-207ENSMUST00000188656 2481 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Trim3Q9R1R2 Zscan10-202ENSMUST00000115509 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 36.2 ms