Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Apoe-210ENSMUST00000174710 514 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Scn11aQ9R053 Nkg7-203ENSMUST00000206741 686 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Scn11aQ9R053 Pla2g4f-201ENSMUST00000054651 3116 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Scn11aQ9R053 4931415C17Rik-202ENSMUST00000131064 2255 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Scn11aQ9R053 Fbxo39-201ENSMUST00000108504 1708 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Scn11aQ9R053 Gpat3-201ENSMUST00000031255 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Scn11aQ9R053 Nt5dc2-206ENSMUST00000227794 1858 ntAPPRIS ALT2 BASIC14.35□□□□□ -0.11
Scn11aQ9R053 Fam126a-203ENSMUST00000115109 2195 ntTSL 5 BASIC14.35□□□□□ -0.11
Scn11aQ9R053 Nxf2-202ENSMUST00000113187 2316 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Scn11aQ9R053 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Scn11aQ9R053 Gabrr2-202ENSMUST00000108162 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Scn11aQ9R053 Fam198a-202ENSMUST00000213773 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Scn11aQ9R053 Myf5-201ENSMUST00000000445 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Scn11aQ9R053 Clcnkb-201ENSMUST00000006378 2370 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Scn11aQ9R053 Bak1-202ENSMUST00000078691 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Scn11aQ9R053 Phactr3-203ENSMUST00000108915 2694 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Scn11aQ9R053 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Scn11aQ9R053 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Scn11aQ9R053 Nsf-202ENSMUST00000103075 3766 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Scn11aQ9R053 Bcar3-201ENSMUST00000029766 3311 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Scn11aQ9R053 Zbtb44-205ENSMUST00000216649 3157 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Scn11aQ9R053 Klhl21-201ENSMUST00000097773 3986 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Scn11aQ9R053 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
Scn11aQ9R053 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Scn11aQ9R053 Olfr222-203ENSMUST00000215339 2166 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Scn11aQ9R053 Maged2-202ENSMUST00000112697 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Scn11aQ9R053 Tcf4-252ENSMUST00000202477 1873 ntTSL 5 BASIC14.35□□□□□ -0.11
Scn11aQ9R053 Dram1-201ENSMUST00000020249 2807 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Scn11aQ9R053 Sema4b-201ENSMUST00000032754 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Scn11aQ9R053 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Scn11aQ9R053 Gm25076-201ENSMUST00000104098 132 ntBASIC14.34□□□□□ -0.11
Scn11aQ9R053 Gm15352-201ENSMUST00000118696 270 ntBASIC14.34□□□□□ -0.11
Scn11aQ9R053 Gm4726-201ENSMUST00000135604 736 ntBASIC14.34□□□□□ -0.11
Scn11aQ9R053 Gm6019-201ENSMUST00000148369 736 ntBASIC14.34□□□□□ -0.11
Scn11aQ9R053 4930430O22Rik-202ENSMUST00000202548 579 ntBASIC14.34□□□□□ -0.11
Scn11aQ9R053 Nanos3-202ENSMUST00000210202 692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scn11aQ9R053 Cmtm2a-203ENSMUST00000212492 635 ntAPPRIS ALT2 TSL 3 BASIC14.34□□□□□ -0.11
Scn11aQ9R053 Cinp-204ENSMUST00000221102 536 ntTSL 2 BASIC14.34□□□□□ -0.11
Scn11aQ9R053 Gm9774-201ENSMUST00000047300 1064 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Scn11aQ9R053 Spns3-202ENSMUST00000092940 2080 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scn11aQ9R053 Enah-201ENSMUST00000078719 2889 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scn11aQ9R053 Rpl15-202ENSMUST00000080281 1922 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scn11aQ9R053 Abhd12b-203ENSMUST00000169156 1775 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
Scn11aQ9R053 Zbtb20-201ENSMUST00000079441 3086 ntAPPRIS P3 TSL 5 BASIC14.34□□□□□ -0.11
Scn11aQ9R053 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scn11aQ9R053 G3bp2-203ENSMUST00000167918 4232 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scn11aQ9R053 Ap3m2-201ENSMUST00000163739 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scn11aQ9R053 Adcyap1r1-204ENSMUST00000165857 1491 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Scn11aQ9R053 Gm44831-201ENSMUST00000208469 2989 ntBASIC14.34□□□□□ -0.11
Scn11aQ9R053 Vwf-201ENSMUST00000100941 1807 ntTSL 5 BASIC14.34□□□□□ -0.11
Scn11aQ9R053 Cant1-201ENSMUST00000017620 4182 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scn11aQ9R053 Ccdc15-204ENSMUST00000216042 1669 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scn11aQ9R053 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scn11aQ9R053 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scn11aQ9R053 Ppp2r2b-202ENSMUST00000117687 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scn11aQ9R053 Nars-201ENSMUST00000025483 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scn11aQ9R053 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scn11aQ9R053 4930453L07Rik-201ENSMUST00000209053 1439 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Scn11aQ9R053 Ankfn1-201ENSMUST00000050983 2665 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Scn11aQ9R053 Kcnc2-201ENSMUST00000092175 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scn11aQ9R053 Shisa9-202ENSMUST00000170672 3421 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scn11aQ9R053 Palm-204ENSMUST00000218631 2725 ntTSL 2 BASIC14.34□□□□□ -0.11
Scn11aQ9R053 Myl2-203ENSMUST00000111751 889 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
Scn11aQ9R053 Gm12395-201ENSMUST00000144765 536 ntTSL 5 BASIC14.34□□□□□ -0.11
Scn11aQ9R053 Fhit-201ENSMUST00000160340 1094 ntTSL 5 BASIC14.34□□□□□ -0.11
Scn11aQ9R053 Gm15954-201ENSMUST00000160746 466 ntTSL 5 BASIC14.34□□□□□ -0.11
Scn11aQ9R053 Erh-202ENSMUST00000166931 506 ntTSL 2 BASIC14.34□□□□□ -0.11
Scn11aQ9R053 Fhit-208ENSMUST00000179394 453 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Scn11aQ9R053 Gm9866-204ENSMUST00000183238 351 ntTSL 5 BASIC14.34□□□□□ -0.11
Scn11aQ9R053 Psmb6-201ENSMUST00000018430 798 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scn11aQ9R053 Gm44867-201ENSMUST00000205675 530 ntTSL 3 BASIC14.34□□□□□ -0.11
Scn11aQ9R053 AC166341.2-201ENSMUST00000220571 120 ntBASIC14.34□□□□□ -0.11
Scn11aQ9R053 Higd2a-201ENSMUST00000026986 648 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scn11aQ9R053 Tex35-201ENSMUST00000027884 909 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scn11aQ9R053 Them5-201ENSMUST00000029794 1251 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scn11aQ9R053 Lst1-201ENSMUST00000097336 415 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scn11aQ9R053 Acin1-216ENSMUST00000141453 2381 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Scn11aQ9R053 Erich5-201ENSMUST00000060894 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scn11aQ9R053 Nkd2-201ENSMUST00000022051 4016 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scn11aQ9R053 Zfp639-201ENSMUST00000029203 1458 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scn11aQ9R053 Ivns1abp-201ENSMUST00000023918 3511 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scn11aQ9R053 Gdf6-201ENSMUST00000057613 3532 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scn11aQ9R053 Fancc-201ENSMUST00000073029 3165 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scn11aQ9R053 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scn11aQ9R053 Gpr153-202ENSMUST00000105650 3838 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Scn11aQ9R053 Pak1-201ENSMUST00000033040 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Scn11aQ9R053 Rgl1-203ENSMUST00000111859 5092 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
Scn11aQ9R053 Usp10-210ENSMUST00000144458 3726 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
Scn11aQ9R053 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Scn11aQ9R053 Rbm39-203ENSMUST00000109587 2810 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Scn11aQ9R053 Zscan22-201ENSMUST00000055528 2620 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Scn11aQ9R053 4931429P17Rik-201ENSMUST00000061899 2012 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Scn11aQ9R053 4933440M02Rik-202ENSMUST00000205794 1601 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Scn11aQ9R053 Cib2-201ENSMUST00000041901 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Scn11aQ9R053 Esrp1-203ENSMUST00000108311 3864 ntTSL 5 BASIC14.33□□□□□ -0.12
Scn11aQ9R053 Gm13814-201ENSMUST00000141341 3077 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Scn11aQ9R053 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Scn11aQ9R053 Slc13a5-201ENSMUST00000021161 3329 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Scn11aQ9R053 Tbkbp1-201ENSMUST00000066078 3338 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Scn11aQ9R053 Gfi1b-201ENSMUST00000028156 1681 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 33 ms