Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 CT030161.3-201ENSMUST00000218235 367 ntTSL 3 BASIC12.95□□□□□ -0.34
Ddx56Q9D0R4 4930447K03Rik-201ENSMUST00000222745 1033 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Ddx56Q9D0R4 1700028J19Rik-201ENSMUST00000037220 1245 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Ddx56Q9D0R4 Gm26232-201ENSMUST00000083360 166 ntBASIC12.95□□□□□ -0.34
Ddx56Q9D0R4 Rnu1b6-201ENSMUST00000083839 166 ntBASIC12.95□□□□□ -0.34
Ddx56Q9D0R4 Cdc7-203ENSMUST00000117196 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Ddx56Q9D0R4 Gm13142-201ENSMUST00000117213 1453 ntBASIC12.95□□□□□ -0.34
Ddx56Q9D0R4 Tardbp-204ENSMUST00000105699 1904 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Ddx56Q9D0R4 AI464131-201ENSMUST00000054920 4173 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Ddx56Q9D0R4 Btnl2-202ENSMUST00000178562 2563 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Ddx56Q9D0R4 Btnl2-201ENSMUST00000025198 2564 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Ddx56Q9D0R4 Ddx46-202ENSMUST00000172272 5676 ntAPPRIS P2 TSL 5 BASIC12.95□□□□□ -0.34
Ddx56Q9D0R4 Ddx46-201ENSMUST00000099479 5664 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Ddx56Q9D0R4 Ttll12-201ENSMUST00000016901 3220 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Ddx56Q9D0R4 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Ddx56Q9D0R4 Bend3-201ENSMUST00000040147 5882 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Ddx56Q9D0R4 Ptdss2-201ENSMUST00000026568 3624 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Ddx56Q9D0R4 Lsm11-202ENSMUST00000129820 6453 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Ddx56Q9D0R4 Hmga1-203ENSMUST00000117600 1635 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Ddx56Q9D0R4 BC030500-201ENSMUST00000062978 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Ddx56Q9D0R4 Zfp783-204ENSMUST00000130490 4419 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Ddx56Q9D0R4 Arid3b-209ENSMUST00000171444 4171 ntAPPRIS P2 TSL 5 BASIC12.95□□□□□ -0.34
Ddx56Q9D0R4 Ptpn2-203ENSMUST00000122412 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Ddx56Q9D0R4 Atp9a-201ENSMUST00000029060 3529 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Ddx56Q9D0R4 Apol7e-201ENSMUST00000096358 2227 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Ddx56Q9D0R4 Fam110a-203ENSMUST00000109864 1591 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Ddx56Q9D0R4 Brd2-202ENSMUST00000095347 2617 ntTSL 5 BASIC12.94□□□□□ -0.34
Ddx56Q9D0R4 Mrps17-206ENSMUST00000121339 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Ddx56Q9D0R4 Brd3-202ENSMUST00000077737 5272 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Ddx56Q9D0R4 2810403A07Rik-201ENSMUST00000029696 2981 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Ddx56Q9D0R4 Grm7-202ENSMUST00000172951 4197 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Ddx56Q9D0R4 Rnf223-201ENSMUST00000209248 2908 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
Ddx56Q9D0R4 Pex5-205ENSMUST00000112532 3148 ntAPPRIS P4 TSL 1 (best) BASIC12.94□□□□□ -0.34
Ddx56Q9D0R4 Arhgef10l-202ENSMUST00000069623 4531 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Ddx56Q9D0R4 Esam-201ENSMUST00000002011 1865 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Ddx56Q9D0R4 Gm13297-201ENSMUST00000120205 934 ntBASIC12.94□□□□□ -0.34
Ddx56Q9D0R4 A430060F13Rik-201ENSMUST00000124176 378 ntBASIC12.94□□□□□ -0.34
Ddx56Q9D0R4 Pyy-202ENSMUST00000127381 529 ntAPPRIS ALT2 TSL 2 BASIC12.94□□□□□ -0.34
Ddx56Q9D0R4 Gm15635-202ENSMUST00000131160 917 ntTSL 3 BASIC12.94□□□□□ -0.34
Ddx56Q9D0R4 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC12.94□□□□□ -0.34
Ddx56Q9D0R4 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC12.94□□□□□ -0.34
Ddx56Q9D0R4 Gm27017-201ENSMUST00000183031 656 ntTSL 3 BASIC12.94□□□□□ -0.34
Ddx56Q9D0R4 Dhrs4-202ENSMUST00000226168 828 ntBASIC12.94□□□□□ -0.34
Ddx56Q9D0R4 Trex2-201ENSMUST00000033738 1017 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Ddx56Q9D0R4 Acyp1-202ENSMUST00000065913 448 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Ddx56Q9D0R4 Olfr1428-201ENSMUST00000087824 945 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
Ddx56Q9D0R4 Cog3-203ENSMUST00000227473 4197 ntBASIC12.94□□□□□ -0.34
Ddx56Q9D0R4 Gramd1b-201ENSMUST00000045682 7488 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Ddx56Q9D0R4 Gjb2-201ENSMUST00000055698 2406 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Ddx56Q9D0R4 Cry2-201ENSMUST00000090559 3976 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Ddx56Q9D0R4 AC167669.2-201ENSMUST00000224417 1620 ntBASIC12.94□□□□□ -0.34
Ddx56Q9D0R4 Gm42890-202ENSMUST00000167642 2566 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Ddx56Q9D0R4 Slc39a9-204ENSMUST00000217889 2155 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Ddx56Q9D0R4 Spata33-202ENSMUST00000212161 2941 ntTSL 2 BASIC12.94□□□□□ -0.34
Ddx56Q9D0R4 Lrig2-201ENSMUST00000046316 7099 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Ddx56Q9D0R4 Syncrip-210ENSMUST00000174391 6257 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Ddx56Q9D0R4 E2f7-209ENSMUST00000174857 2865 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Ddx56Q9D0R4 Ipo13-201ENSMUST00000036156 3595 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Ddx56Q9D0R4 Zfp125-201ENSMUST00000079237 2488 ntBASIC12.94□□□□□ -0.34
Ddx56Q9D0R4 Lmln-201ENSMUST00000023497 6147 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Ddx56Q9D0R4 Pbxip1-201ENSMUST00000038942 4479 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Ddx56Q9D0R4 4930488B22Rik-201ENSMUST00000172500 1722 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Ddx56Q9D0R4 Nrg1-206ENSMUST00000208205 2645 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Ddx56Q9D0R4 Pbld1-201ENSMUST00000020266 2407 ntAPPRIS ALT1 TSL 5 BASIC12.93□□□□□ -0.34
Ddx56Q9D0R4 Pla2g4f-201ENSMUST00000054651 3116 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Ddx56Q9D0R4 Nupl1-206ENSMUST00000225111 2936 ntBASIC12.93□□□□□ -0.34
Ddx56Q9D0R4 Bdnf-205ENSMUST00000111045 3973 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Ddx56Q9D0R4 Heatr3-202ENSMUST00000121949 3086 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Ddx56Q9D0R4 Gtf2ird1-224ENSMUST00000202280 3052 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Ddx56Q9D0R4 Slc25a24-201ENSMUST00000029477 3431 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Ddx56Q9D0R4 Gm12802-201ENSMUST00000145510 1813 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Ddx56Q9D0R4 St6galnac4-204ENSMUST00000179989 2826 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Ddx56Q9D0R4 Asrgl1-201ENSMUST00000049948 4195 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Ddx56Q9D0R4 Ighv1-80-201ENSMUST00000103547 351 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
Ddx56Q9D0R4 Gm15370-201ENSMUST00000117158 253 ntBASIC12.93□□□□□ -0.34
Ddx56Q9D0R4 Gm11531-201ENSMUST00000117614 555 ntBASIC12.93□□□□□ -0.34
Ddx56Q9D0R4 Retn-201ENSMUST00000012849 874 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Ddx56Q9D0R4 Timm10b-208ENSMUST00000151193 1083 ntTSL 2 BASIC12.93□□□□□ -0.34
Ddx56Q9D0R4 Prc1-211ENSMUST00000174199 2128 ntTSL 5 BASIC12.93□□□□□ -0.34
Ddx56Q9D0R4 Gm26973-201ENSMUST00000182105 696 ntTSL 3 BASIC12.93□□□□□ -0.34
Ddx56Q9D0R4 Nipsnap3a-204ENSMUST00000188045 1099 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Ddx56Q9D0R4 1700031P21Rik-203ENSMUST00000191400 466 ntTSL 3 BASIC12.93□□□□□ -0.34
Ddx56Q9D0R4 Tpd52l1-205ENSMUST00000215515 857 ntTSL 2 BASIC12.93□□□□□ -0.34
Ddx56Q9D0R4 Sit1-201ENSMUST00000030180 1228 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Ddx56Q9D0R4 Gm11562-201ENSMUST00000073853 817 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
Ddx56Q9D0R4 Rtl5-204ENSMUST00000188731 4325 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Ddx56Q9D0R4 Usp24-204ENSMUST00000165709 10594 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Ddx56Q9D0R4 H2-T22-203ENSMUST00000080015 1761 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
Ddx56Q9D0R4 1700001L05Rik-201ENSMUST00000100370 2270 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Ddx56Q9D0R4 Gabpb1-204ENSMUST00000103227 2751 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
Ddx56Q9D0R4 Cacnb2-203ENSMUST00000114723 3945 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Ddx56Q9D0R4 Dysf-210ENSMUST00000153860 6525 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Ddx56Q9D0R4 Zeb2-201ENSMUST00000028229 5335 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Ddx56Q9D0R4 Map3k4-201ENSMUST00000089058 5305 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Ddx56Q9D0R4 Armcx2-203ENSMUST00000119010 3007 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Ddx56Q9D0R4 Ripk3-201ENSMUST00000022830 1892 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Ddx56Q9D0R4 Arhgap12-211ENSMUST00000182383 2500 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Ddx56Q9D0R4 Otud7b-201ENSMUST00000035519 8043 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Ddx56Q9D0R4 Tgfbr2-201ENSMUST00000035014 3476 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Ddx56Q9D0R4 1500009C09Rik-201ENSMUST00000136948 1526 ntAPPRIS P5 TSL 3 BASIC12.93□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 47.1 ms