Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Ccdc190-201ENSMUST00000094348 1731 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Sh3rf1Q69ZI1 Wdr4-207ENSMUST00000171171 4153 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Sh3rf1Q69ZI1 Tbc1d14-205ENSMUST00000136189 4436 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Sh3rf1Q69ZI1 Smim1-208ENSMUST00000143047 3373 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sh3rf1Q69ZI1 Snx29-203ENSMUST00000122168 2096 ntTSL 5 BASIC12.5□□□□□ -0.41
Sh3rf1Q69ZI1 Zdhhc20-205ENSMUST00000226057 2179 ntAPPRIS ALT2 BASIC12.5□□□□□ -0.41
Sh3rf1Q69ZI1 Cry2-201ENSMUST00000090559 3976 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sh3rf1Q69ZI1 4833439L19Rik-208ENSMUST00000153065 2502 ntTSL 5 BASIC12.5□□□□□ -0.41
Sh3rf1Q69ZI1 Per1-206ENSMUST00000166748 4636 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sh3rf1Q69ZI1 Steap3-204ENSMUST00000112643 2873 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Sh3rf1Q69ZI1 Cmklr1-201ENSMUST00000047936 2882 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sh3rf1Q69ZI1 Slitrk5-201ENSMUST00000042767 4831 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
Sh3rf1Q69ZI1 Rab11fip3-203ENSMUST00000122103 5015 ntAPPRIS P4 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sh3rf1Q69ZI1 Qrich1-202ENSMUST00000112155 3040 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sh3rf1Q69ZI1 Nfib-203ENSMUST00000107245 9116 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Sh3rf1Q69ZI1 Fosb-202ENSMUST00000207334 3664 ntTSL 5 BASIC12.5□□□□□ -0.41
Sh3rf1Q69ZI1 A430005L14Rik-202ENSMUST00000105645 977 ntTSL 3 BASIC12.5□□□□□ -0.41
Sh3rf1Q69ZI1 Ndufs5-202ENSMUST00000106206 599 ntAPPRIS P1 TSL 3 BASIC12.5□□□□□ -0.41
Sh3rf1Q69ZI1 Gm16479-201ENSMUST00000121706 932 ntBASIC12.5□□□□□ -0.41
Sh3rf1Q69ZI1 Hnf4aos-203ENSMUST00000141329 839 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Sh3rf1Q69ZI1 Gm14209-201ENSMUST00000154946 462 ntTSL 5 BASIC12.5□□□□□ -0.41
Sh3rf1Q69ZI1 Creb3-206ENSMUST00000167751 1212 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Sh3rf1Q69ZI1 C87198-201ENSMUST00000173553 1045 ntTSL 3 BASIC12.5□□□□□ -0.41
Sh3rf1Q69ZI1 Gm20033-203ENSMUST00000180912 796 ntTSL 5 BASIC12.5□□□□□ -0.41
Sh3rf1Q69ZI1 4930594M17Rik-201ENSMUST00000181204 1033 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Sh3rf1Q69ZI1 Gm26602-201ENSMUST00000181321 285 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Sh3rf1Q69ZI1 Lsmem2-201ENSMUST00000191791 369 ntTSL 3 BASIC12.5□□□□□ -0.41
Sh3rf1Q69ZI1 Gm18056-201ENSMUST00000207670 568 ntBASIC12.5□□□□□ -0.41
Sh3rf1Q69ZI1 Gm18061-201ENSMUST00000208350 562 ntBASIC12.5□□□□□ -0.41
Sh3rf1Q69ZI1 Gm18063-201ENSMUST00000208529 568 ntBASIC12.5□□□□□ -0.41
Sh3rf1Q69ZI1 Gm18052-201ENSMUST00000208750 559 ntBASIC12.5□□□□□ -0.41
Sh3rf1Q69ZI1 Gm6458-201ENSMUST00000211573 635 ntBASIC12.5□□□□□ -0.41
Sh3rf1Q69ZI1 Tmem205-203ENSMUST00000213698 705 ntAPPRIS P1 TSL 3 BASIC12.5□□□□□ -0.41
Sh3rf1Q69ZI1 AC158516.1-201ENSMUST00000213921 205 ntTSL 5 BASIC12.5□□□□□ -0.41
Sh3rf1Q69ZI1 Olfr272-201ENSMUST00000051600 962 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Sh3rf1Q69ZI1 Fbxl22-201ENSMUST00000056890 3935 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sh3rf1Q69ZI1 Fam71f1-203ENSMUST00000164560 1411 ntAPPRIS P4 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sh3rf1Q69ZI1 Igbp1b-201ENSMUST00000054786 1456 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Sh3rf1Q69ZI1 Odf3-202ENSMUST00000106049 1509 ntTSL 5 BASIC12.5□□□□□ -0.41
Sh3rf1Q69ZI1 Cngb1-201ENSMUST00000093268 1512 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Sh3rf1Q69ZI1 4933412E12Rik-201ENSMUST00000217853 1698 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Sh3rf1Q69ZI1 Avpr2-201ENSMUST00000033765 1812 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sh3rf1Q69ZI1 Gm13657-201ENSMUST00000135682 1939 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Sh3rf1Q69ZI1 Mat2b-202ENSMUST00000101347 2053 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Sh3rf1Q69ZI1 Acsl6-201ENSMUST00000000145 2297 ntTSL 5 BASIC12.5□□□□□ -0.41
Sh3rf1Q69ZI1 Clec10a-209ENSMUST00000178945 2332 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Sh3rf1Q69ZI1 Mtap-201ENSMUST00000058030 2797 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sh3rf1Q69ZI1 C530043K16Rik-201ENSMUST00000201865 3109 ntBASIC12.5□□□□□ -0.41
Sh3rf1Q69ZI1 Nckap5l-201ENSMUST00000023747 4853 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sh3rf1Q69ZI1 Exog-201ENSMUST00000035094 3832 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sh3rf1Q69ZI1 Tollip-201ENSMUST00000001950 3788 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sh3rf1Q69ZI1 Lrrn1-201ENSMUST00000049285 3700 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sh3rf1Q69ZI1 Mapk4-202ENSMUST00000159162 3514 ntTSL 5 BASIC12.49□□□□□ -0.41
Sh3rf1Q69ZI1 Akt2-201ENSMUST00000051356 2923 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sh3rf1Q69ZI1 Slc25a22-203ENSMUST00000106007 2546 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sh3rf1Q69ZI1 Hmgcs2-202ENSMUST00000120541 2524 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sh3rf1Q69ZI1 Ccdc154-203ENSMUST00000182621 2402 ntAPPRIS P2 TSL 5 BASIC12.49□□□□□ -0.41
Sh3rf1Q69ZI1 Mrap2-201ENSMUST00000049457 1931 ntAPPRIS P1 TSL 3 BASIC12.49□□□□□ -0.41
Sh3rf1Q69ZI1 Smpd4-206ENSMUST00000163997 1722 ntTSL 5 BASIC12.49□□□□□ -0.41
Sh3rf1Q69ZI1 Fetub-201ENSMUST00000023587 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sh3rf1Q69ZI1 Tmem80-204ENSMUST00000128906 1387 ntTSL 2 BASIC12.49□□□□□ -0.41
Sh3rf1Q69ZI1 Crym-201ENSMUST00000033198 1383 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sh3rf1Q69ZI1 Tmem254b-202ENSMUST00000100806 1108 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Sh3rf1Q69ZI1 Tmem254a-201ENSMUST00000100811 1108 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Sh3rf1Q69ZI1 R3hdml-201ENSMUST00000109416 1094 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Sh3rf1Q69ZI1 4930579D09Rik-201ENSMUST00000132321 469 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Sh3rf1Q69ZI1 Dlx1as-202ENSMUST00000137251 647 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Sh3rf1Q69ZI1 Gm12984-201ENSMUST00000145711 273 ntTSL 5 BASIC12.49□□□□□ -0.41
Sh3rf1Q69ZI1 Gm16191-202ENSMUST00000148464 484 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Sh3rf1Q69ZI1 Gm5637-201ENSMUST00000153890 1119 ntBASIC12.49□□□□□ -0.41
Sh3rf1Q69ZI1 Gm26185-201ENSMUST00000157692 266 ntBASIC12.49□□□□□ -0.41
Sh3rf1Q69ZI1 Gm45609-206ENSMUST00000210176 1023 ntTSL 5 BASIC12.49□□□□□ -0.41
Sh3rf1Q69ZI1 Gm45865-201ENSMUST00000211815 945 ntBASIC12.49□□□□□ -0.41
Sh3rf1Q69ZI1 Rfxank-203ENSMUST00000212320 1121 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Sh3rf1Q69ZI1 Gm32926-201ENSMUST00000214043 681 ntTSL 3 BASIC12.49□□□□□ -0.41
Sh3rf1Q69ZI1 AC160029.2-201ENSMUST00000218285 548 ntTSL 3 BASIC12.49□□□□□ -0.41
Sh3rf1Q69ZI1 CT009738.1-201ENSMUST00000219031 809 ntBASIC12.49□□□□□ -0.41
Sh3rf1Q69ZI1 AC153506.3-201ENSMUST00000219287 1029 ntTSL 5 BASIC12.49□□□□□ -0.41
Sh3rf1Q69ZI1 Ndufa3-201ENSMUST00000076657 515 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sh3rf1Q69ZI1 n-R5s195-201ENSMUST00000082891 119 ntBASIC12.49□□□□□ -0.41
Sh3rf1Q69ZI1 Iws1-201ENSMUST00000025243 9613 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sh3rf1Q69ZI1 Apc2-202ENSMUST00000105359 9173 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Sh3rf1Q69ZI1 Snrk-203ENSMUST00000120173 4758 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sh3rf1Q69ZI1 Mmel1-204ENSMUST00000105635 2592 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Sh3rf1Q69ZI1 Tsku-203ENSMUST00000165257 2514 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
Sh3rf1Q69ZI1 Klf11-201ENSMUST00000020982 4086 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sh3rf1Q69ZI1 E2f7-201ENSMUST00000073781 5473 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sh3rf1Q69ZI1 Dcaf11-203ENSMUST00000117701 2311 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Sh3rf1Q69ZI1 Lnx1-206ENSMUST00000121690 2302 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Sh3rf1Q69ZI1 Evi5l-208ENSMUST00000176825 3728 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Sh3rf1Q69ZI1 Npbwr1-201ENSMUST00000044180 3692 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
Sh3rf1Q69ZI1 Ccdc151-202ENSMUST00000115336 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sh3rf1Q69ZI1 AC160410.1-201ENSMUST00000219298 1972 ntBASIC12.49□□□□□ -0.41
Sh3rf1Q69ZI1 Stat3-203ENSMUST00000127638 4516 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sh3rf1Q69ZI1 Rab17-201ENSMUST00000027529 1831 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sh3rf1Q69ZI1 Rac1-201ENSMUST00000080537 4159 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sh3rf1Q69ZI1 Gm44831-201ENSMUST00000208469 2989 ntBASIC12.48□□□□□ -0.41
Sh3rf1Q69ZI1 Alg12-201ENSMUST00000043087 1793 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Sh3rf1Q69ZI1 Hltf-201ENSMUST00000002502 4955 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sh3rf1Q69ZI1 Krt17-201ENSMUST00000080893 1551 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 60.2 ms