Protein–RNA interactions for Protein: Q3U827

Rnf180, E3 ubiquitin-protein ligase RNF180, mousemouse

Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf180Q3U827 Cd300c2-201ENSMUST00000092464 1187 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rnf180Q3U827 Ccndbp1-202ENSMUST00000099488 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rnf180Q3U827 Aven-202ENSMUST00000099588 791 ntAPPRIS ALT2 TSL 3 BASIC14.28□□□□□ -0.12
Rnf180Q3U827 Olfr1313-201ENSMUST00000099599 938 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Rnf180Q3U827 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rnf180Q3U827 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Rnf180Q3U827 Plekha2-204ENSMUST00000128715 3463 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rnf180Q3U827 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Rnf180Q3U827 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rnf180Q3U827 Pramel1-201ENSMUST00000037419 2794 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rnf180Q3U827 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rnf180Q3U827 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Rnf180Q3U827 Rabgef1-203ENSMUST00000119797 2690 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rnf180Q3U827 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rnf180Q3U827 Miga2-208ENSMUST00000140075 2196 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Rnf180Q3U827 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Rnf180Q3U827 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Rnf180Q3U827 Pik3cd-204ENSMUST00000105690 4921 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.12
Rnf180Q3U827 Cacna1i-202ENSMUST00000160424 9781 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Rnf180Q3U827 Fam71f1-201ENSMUST00000090487 1584 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Rnf180Q3U827 Kmt2e-202ENSMUST00000115128 7317 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
Rnf180Q3U827 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Rnf180Q3U827 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
Rnf180Q3U827 Phactr3-201ENSMUST00000103065 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Rnf180Q3U827 Ighv1-62-3-201ENSMUST00000103532 405 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
Rnf180Q3U827 Gm9095-201ENSMUST00000117607 881 ntBASIC14.27□□□□□ -0.13
Rnf180Q3U827 Gm11475-201ENSMUST00000118482 476 ntBASIC14.27□□□□□ -0.13
Rnf180Q3U827 Dmrtc1a-202ENSMUST00000119624 1149 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
Rnf180Q3U827 Gm9097-201ENSMUST00000120514 880 ntBASIC14.27□□□□□ -0.13
Rnf180Q3U827 Csf1-204ENSMUST00000120654 821 ntTSL 3 BASIC14.27□□□□□ -0.13
Rnf180Q3U827 Junos-202ENSMUST00000125438 559 ntTSL 2 BASIC14.27□□□□□ -0.13
Rnf180Q3U827 4930546C10Rik-201ENSMUST00000025428 363 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
Rnf180Q3U827 Hddc2-201ENSMUST00000000304 858 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Rnf180Q3U827 Tmsb15b2-201ENSMUST00000069803 450 ntTSL 2 BASIC14.27□□□□□ -0.13
Rnf180Q3U827 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Rnf180Q3U827 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Rnf180Q3U827 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC14.27□□□□□ -0.13
Rnf180Q3U827 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Rnf180Q3U827 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Rnf180Q3U827 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Rnf180Q3U827 Anks1b-214ENSMUST00000182356 7561 ntTSL 5 BASIC14.27□□□□□ -0.13
Rnf180Q3U827 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Rnf180Q3U827 Gm16011-201ENSMUST00000121567 2662 ntBASIC14.27□□□□□ -0.13
Rnf180Q3U827 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Rnf180Q3U827 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rnf180Q3U827 Gpr19-201ENSMUST00000046255 1610 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rnf180Q3U827 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rnf180Q3U827 Mterf3-201ENSMUST00000021991 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rnf180Q3U827 Pou3f4-201ENSMUST00000078229 2928 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Rnf180Q3U827 Inpp4b-215ENSMUST00000217122 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rnf180Q3U827 Slc23a4-201ENSMUST00000044387 2175 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Rnf180Q3U827 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rnf180Q3U827 Lhcgr-201ENSMUST00000024916 2553 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rnf180Q3U827 Gps1-201ENSMUST00000100134 1925 ntTSL 2 BASIC14.26□□□□□ -0.13
Rnf180Q3U827 Gm22937-201ENSMUST00000103954 131 ntBASIC14.26□□□□□ -0.13
Rnf180Q3U827 Fam3a-204ENSMUST00000114141 1243 ntTSL 5 BASIC14.26□□□□□ -0.13
Rnf180Q3U827 1700017J07Rik-201ENSMUST00000140241 473 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Rnf180Q3U827 Erg-208ENSMUST00000176345 1222 ntTSL 5 BASIC14.26□□□□□ -0.13
Rnf180Q3U827 1600010M07Rik-202ENSMUST00000188662 654 ntTSL 2 BASIC14.26□□□□□ -0.13
Rnf180Q3U827 Nutf2-202ENSMUST00000212042 645 ntAPPRIS P1 TSL 3 BASIC14.26□□□□□ -0.13
Rnf180Q3U827 Olfr1335-202ENSMUST00000219094 1148 ntAPPRIS P2 BASIC14.26□□□□□ -0.13
Rnf180Q3U827 CT010506.1-201ENSMUST00000223673 349 ntBASIC14.26□□□□□ -0.13
Rnf180Q3U827 Prop1-201ENSMUST00000051159 1133 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rnf180Q3U827 Olfr323-201ENSMUST00000070804 972 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Rnf180Q3U827 Ccdc30-203ENSMUST00000084307 989 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Rnf180Q3U827 Olfr1335-201ENSMUST00000084313 1148 ntAPPRIS ALT2 BASIC14.26□□□□□ -0.13
Rnf180Q3U827 Pgk1-rs7-201ENSMUST00000085735 1255 ntBASIC14.26□□□□□ -0.13
Rnf180Q3U827 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Rnf180Q3U827 Ctif-201ENSMUST00000165559 6173 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Rnf180Q3U827 Gcat-201ENSMUST00000006544 2365 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rnf180Q3U827 Ung-203ENSMUST00000112275 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rnf180Q3U827 Slc8a3-203ENSMUST00000182208 3433 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rnf180Q3U827 Gm36500-201ENSMUST00000221821 1626 ntTSL 5 BASIC14.26□□□□□ -0.13
Rnf180Q3U827 1110059E24Rik-201ENSMUST00000038830 1614 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rnf180Q3U827 Tuba1a-201ENSMUST00000097014 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rnf180Q3U827 Dtnb-223ENSMUST00000174547 2112 ntTSL 5 BASIC14.26□□□□□ -0.13
Rnf180Q3U827 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rnf180Q3U827 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rnf180Q3U827 B3galnt2-201ENSMUST00000099747 3892 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rnf180Q3U827 AC166361.2-201ENSMUST00000219269 1415 ntBASIC14.25□□□□□ -0.13
Rnf180Q3U827 Gm12802-201ENSMUST00000145510 1813 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Rnf180Q3U827 Ildr2-201ENSMUST00000111416 8251 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rnf180Q3U827 Ablim1-211ENSMUST00000111555 2562 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Rnf180Q3U827 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rnf180Q3U827 Hist1h4i-201ENSMUST00000102977 727 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Rnf180Q3U827 Gm11554-201ENSMUST00000105056 890 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Rnf180Q3U827 Apoc3-202ENSMUST00000118649 453 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
Rnf180Q3U827 Gm14165-201ENSMUST00000121456 952 ntBASIC14.25□□□□□ -0.13
Rnf180Q3U827 Gm16441-201ENSMUST00000138176 924 ntBASIC14.25□□□□□ -0.13
Rnf180Q3U827 Tnnt1-206ENSMUST00000163710 885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rnf180Q3U827 Gm29543-201ENSMUST00000188138 967 ntBASIC14.25□□□□□ -0.13
Rnf180Q3U827 Gpx1-204ENSMUST00000193987 653 ntTSL 3 BASIC14.25□□□□□ -0.13
Rnf180Q3U827 Tmprss11c-202ENSMUST00000196462 1257 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Rnf180Q3U827 Gm43811-201ENSMUST00000202862 695 ntBASIC14.25□□□□□ -0.13
Rnf180Q3U827 Gm4903-201ENSMUST00000210462 405 ntBASIC14.25□□□□□ -0.13
Rnf180Q3U827 Gm3635-201ENSMUST00000212314 354 ntBASIC14.25□□□□□ -0.13
Rnf180Q3U827 Gm9487-201ENSMUST00000216600 472 ntBASIC14.25□□□□□ -0.13
Rnf180Q3U827 Ly86-201ENSMUST00000021860 1134 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rnf180Q3U827 Cby1-201ENSMUST00000023064 1119 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rnf180Q3U827 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 34.2 ms