Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 1810009A15Rik-201ENSMUST00000096251 806 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Col8a1Q00780 Krba1-202ENSMUST00000077093 8380 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Col8a1Q00780 Gm20488-201ENSMUST00000201641 2996 ntTSL 2 BASIC10.54□□□□□ -0.72
Col8a1Q00780 Flrt1-201ENSMUST00000113383 5859 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Col8a1Q00780 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Col8a1Q00780 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC10.54□□□□□ -0.72
Col8a1Q00780 Gm26525-201ENSMUST00000180666 3616 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Col8a1Q00780 Ano1-201ENSMUST00000033393 4585 ntAPPRIS ALT2 TSL 5 BASIC10.54□□□□□ -0.72
Col8a1Q00780 Eno3-206ENSMUST00000170716 1461 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Col8a1Q00780 Pi4kb-201ENSMUST00000072287 3692 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Col8a1Q00780 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC10.54□□□□□ -0.72
Col8a1Q00780 Ptp4a3-204ENSMUST00000167582 2640 ntTSL 5 BASIC10.54□□□□□ -0.72
Col8a1Q00780 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC10.53□□□□□ -0.72
Col8a1Q00780 Arfgap1-203ENSMUST00000108860 2326 ntAPPRIS ALT2 TSL 1 (best) BASIC10.53□□□□□ -0.72
Col8a1Q00780 Ddx27-205ENSMUST00000150571 2151 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Col8a1Q00780 Fbxl19-202ENSMUST00000186116 3641 ntTSL 5 BASIC10.53□□□□□ -0.72
Col8a1Q00780 Mknk1-201ENSMUST00000019677 2543 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Col8a1Q00780 Ripk3-201ENSMUST00000022830 1892 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Col8a1Q00780 Glis3-202ENSMUST00000112612 3016 ntAPPRIS ALT2 TSL 1 (best) BASIC10.53□□□□□ -0.72
Col8a1Q00780 Abi1-201ENSMUST00000078977 3027 ntAPPRIS ALT1 TSL 5 BASIC10.53□□□□□ -0.72
Col8a1Q00780 Unc5c-202ENSMUST00000106236 9646 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Col8a1Q00780 Jazf1-201ENSMUST00000074541 2203 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Col8a1Q00780 Speg-201ENSMUST00000087122 10801 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Col8a1Q00780 Rnft2-202ENSMUST00000121369 4431 ntAPPRIS ALT1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Col8a1Q00780 Myo18a-202ENSMUST00000092884 5117 ntAPPRIS ALT2 TSL 5 BASIC10.53□□□□□ -0.72
Col8a1Q00780 Dok7-203ENSMUST00000114270 2779 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Col8a1Q00780 Dcun1d3-201ENSMUST00000059851 5985 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Col8a1Q00780 Sirt4-201ENSMUST00000112066 1794 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Col8a1Q00780 Zfp536-203ENSMUST00000176114 4341 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Col8a1Q00780 Gstm4-202ENSMUST00000106670 777 ntTSL 3 BASIC10.53□□□□□ -0.72
Col8a1Q00780 Msrb3-202ENSMUST00000130950 561 ntTSL 3 BASIC10.53□□□□□ -0.72
Col8a1Q00780 Tsc22d1-206ENSMUST00000134109 801 ntTSL 2 BASIC10.53□□□□□ -0.72
Col8a1Q00780 Tmem74bos-201ENSMUST00000137422 390 ntTSL 3 BASIC10.53□□□□□ -0.72
Col8a1Q00780 Gm11630-201ENSMUST00000152825 382 ntTSL 2 BASIC10.53□□□□□ -0.72
Col8a1Q00780 Gm16339-201ENSMUST00000160954 929 ntTSL 5 BASIC10.53□□□□□ -0.72
Col8a1Q00780 Ubl5-206ENSMUST00000161486 794 ntTSL 2 BASIC10.53□□□□□ -0.72
Col8a1Q00780 S100a14-201ENSMUST00000164481 915 ntTSL 2 BASIC10.53□□□□□ -0.72
Col8a1Q00780 Prss54-202ENSMUST00000180075 1152 ntAPPRIS P3 TSL 5 BASIC10.53□□□□□ -0.72
Col8a1Q00780 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Col8a1Q00780 H2-Bl-202ENSMUST00000183560 316 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Col8a1Q00780 Gm4131-201ENSMUST00000186010 1264 ntAPPRIS P1 TSL 5 BASIC10.53□□□□□ -0.72
Col8a1Q00780 Gm29083-201ENSMUST00000189205 733 ntTSL 3 BASIC10.53□□□□□ -0.72
Col8a1Q00780 Mir7686-201ENSMUST00000200604 57 ntBASIC10.53□□□□□ -0.72
Col8a1Q00780 Gm45285-201ENSMUST00000210418 749 ntTSL 3 BASIC10.53□□□□□ -0.72
Col8a1Q00780 Gm45338-204ENSMUST00000210658 1105 ntTSL 5 BASIC10.53□□□□□ -0.72
Col8a1Q00780 AC161424.1-202ENSMUST00000213570 767 ntTSL 3 BASIC10.53□□□□□ -0.72
Col8a1Q00780 1110019B22Rik-202ENSMUST00000218396 989 ntTSL 5 BASIC10.53□□□□□ -0.72
Col8a1Q00780 AC163667.3-201ENSMUST00000225774 222 ntBASIC10.53□□□□□ -0.72
Col8a1Q00780 AC125209.1-201ENSMUST00000225812 766 ntBASIC10.53□□□□□ -0.72
Col8a1Q00780 Ankrd2-201ENSMUST00000026172 1100 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Col8a1Q00780 4930562F07Rik-201ENSMUST00000028061 830 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Col8a1Q00780 Emp3-201ENSMUST00000038876 736 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Col8a1Q00780 Sstr2-201ENSMUST00000067591 1041 ntTSL 2 BASIC10.53□□□□□ -0.72
Col8a1Q00780 Snora73b-201ENSMUST00000083419 205 ntBASIC10.53□□□□□ -0.72
Col8a1Q00780 Fam13b-201ENSMUST00000040506 3343 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Col8a1Q00780 Emc3-201ENSMUST00000032425 1985 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Col8a1Q00780 Radil-204ENSMUST00000110785 3708 ntAPPRIS ALT2 TSL 1 (best) BASIC10.53□□□□□ -0.72
Col8a1Q00780 Gm12915-201ENSMUST00000131381 1499 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Col8a1Q00780 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC10.53□□□□□ -0.72
Col8a1Q00780 Szrd1-203ENSMUST00000102487 3244 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Col8a1Q00780 Brinp1-201ENSMUST00000030036 3212 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Col8a1Q00780 Rbpj-207ENSMUST00000201883 4961 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Col8a1Q00780 Dclk1-215ENSMUST00000200352 1662 ntTSL 2 BASIC10.53□□□□□ -0.72
Col8a1Q00780 Gm9129-201ENSMUST00000218173 1689 ntBASIC10.53□□□□□ -0.72
Col8a1Q00780 H2-T22-202ENSMUST00000077960 1694 ntAPPRIS P3 TSL 1 (best) BASIC10.53□□□□□ -0.72
Col8a1Q00780 Uimc1-202ENSMUST00000099496 1678 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Col8a1Q00780 Rgs6-207ENSMUST00000186323 1308 ntTSL 5 BASIC10.53□□□□□ -0.72
Col8a1Q00780 Olfr139-204ENSMUST00000214111 1311 ntAPPRIS P1 TSL 5 BASIC10.53□□□□□ -0.72
Col8a1Q00780 Gpr26-201ENSMUST00000045840 11571 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Col8a1Q00780 Gm4297-201ENSMUST00000119285 2579 ntAPPRIS P1 TSL 5 BASIC10.53□□□□□ -0.72
Col8a1Q00780 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Col8a1Q00780 Dennd4c-202ENSMUST00000082026 7940 ntAPPRIS ALT2 TSL 5 BASIC10.53□□□□□ -0.72
Col8a1Q00780 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC10.53□□□□□ -0.72
Col8a1Q00780 Taf6-203ENSMUST00000110937 2093 ntTSL 5 BASIC10.53□□□□□ -0.72
Col8a1Q00780 Grip1-202ENSMUST00000077871 3720 ntAPPRIS ALT2 TSL 1 (best) BASIC10.53□□□□□ -0.72
Col8a1Q00780 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Col8a1Q00780 Stx18-203ENSMUST00000114126 3002 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.72
Col8a1Q00780 Ccdc116-203ENSMUST00000115711 1915 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.72
Col8a1Q00780 Gm10729-202ENSMUST00000193403 1375 ntBASIC10.52□□□□□ -0.72
Col8a1Q00780 Nol10-201ENSMUST00000046011 3021 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.72
Col8a1Q00780 Ly9-202ENSMUST00000068878 2488 ntAPPRIS P3 TSL 1 (best) BASIC10.52□□□□□ -0.72
Col8a1Q00780 Jade1-204ENSMUST00000170711 2896 ntTSL 5 BASIC10.52□□□□□ -0.72
Col8a1Q00780 Dcaf1-202ENSMUST00000159645 4945 ntTSL 1 (best) BASIC10.52□□□□□ -0.72
Col8a1Q00780 Aco1-201ENSMUST00000102973 3832 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.72
Col8a1Q00780 Gm3765-201ENSMUST00000130985 1447 ntBASIC10.52□□□□□ -0.73
Col8a1Q00780 Exd2-201ENSMUST00000038185 3310 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Col8a1Q00780 Cct3-ps1-201ENSMUST00000118023 1647 ntBASIC10.52□□□□□ -0.73
Col8a1Q00780 Ccdc121-201ENSMUST00000058825 1819 ntAPPRIS P1 BASIC10.52□□□□□ -0.73
Col8a1Q00780 Abca3-201ENSMUST00000039013 6476 ntAPPRIS P2 TSL 1 (best) BASIC10.52□□□□□ -0.73
Col8a1Q00780 Map3k4-201ENSMUST00000089058 5305 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Col8a1Q00780 Cadm2-202ENSMUST00000120594 3248 ntAPPRIS ALT1 TSL 5 BASIC10.52□□□□□ -0.73
Col8a1Q00780 Fam166b-203ENSMUST00000107929 865 ntAPPRIS P5 TSL 5 BASIC10.52□□□□□ -0.73
Col8a1Q00780 Mettl1-202ENSMUST00000120542 1044 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
Col8a1Q00780 Mup-ps26-201ENSMUST00000121751 202 ntBASIC10.52□□□□□ -0.73
Col8a1Q00780 Lmo3-202ENSMUST00000161450 1048 ntAPPRIS P1 TSL 5 BASIC10.52□□□□□ -0.73
Col8a1Q00780 Smyd1-205ENSMUST00000173297 947 ntTSL 5 BASIC10.52□□□□□ -0.73
Col8a1Q00780 Ager-207ENSMUST00000173992 1248 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
Col8a1Q00780 3110045C21Rik-201ENSMUST00000180638 1135 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
Col8a1Q00780 Mir6998-201ENSMUST00000183343 64 ntBASIC10.52□□□□□ -0.73
Col8a1Q00780 Fgfr3-ps-201ENSMUST00000195511 1137 ntBASIC10.52□□□□□ -0.73
Retrieved 100 of 76,532 protein–RNA pairs in 55.1 ms