Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Gm43051-201ENSMUST00000201096 2678 ntBASIC11.83□□□□□ -0.51
Sox3P53784 Slc7a6-201ENSMUST00000034378 3750 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.51
Sox3P53784 Gm19221-201ENSMUST00000221827 1477 ntBASIC11.83□□□□□ -0.52
Sox3P53784 Acot7-202ENSMUST00000075363 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox3P53784 Zap70-201ENSMUST00000027291 2245 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox3P53784 Trpv4-204ENSMUST00000112222 2475 ntTSL 5 BASIC11.83□□□□□ -0.52
Sox3P53784 Cngb1-203ENSMUST00000120044 3243 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
Sox3P53784 Rbm47-204ENSMUST00000113726 4703 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox3P53784 Mettl17-201ENSMUST00000047899 1623 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox3P53784 Opcml-201ENSMUST00000073822 2378 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Sox3P53784 Slc25a40-201ENSMUST00000066921 2784 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox3P53784 Slc44a4-201ENSMUST00000007249 2261 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox3P53784 Cpped1-202ENSMUST00000096272 2663 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox3P53784 Ccdc163-204ENSMUST00000106464 1213 ntAPPRIS P2 TSL 5 BASIC11.83□□□□□ -0.52
Sox3P53784 Cd27-202ENSMUST00000112281 832 ntTSL 3 BASIC11.83□□□□□ -0.52
Sox3P53784 Gm12502-201ENSMUST00000120197 444 ntBASIC11.83□□□□□ -0.52
Sox3P53784 Got2-ps1-201ENSMUST00000121655 1293 ntBASIC11.83□□□□□ -0.52
Sox3P53784 1810063I02Rik-201ENSMUST00000130205 274 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Sox3P53784 Hmgn1-202ENSMUST00000133885 261 ntTSL 5 BASIC11.83□□□□□ -0.52
Sox3P53784 Gm23699-201ENSMUST00000158835 135 ntBASIC11.83□□□□□ -0.52
Sox3P53784 Hsbp1l1-201ENSMUST00000166219 1251 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox3P53784 Iqcf6-201ENSMUST00000171091 537 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Sox3P53784 Gm25700-201ENSMUST00000177693 110 ntBASIC11.83□□□□□ -0.52
Sox3P53784 Gm2546-201ENSMUST00000182630 991 ntBASIC11.83□□□□□ -0.52
Sox3P53784 Gm4691-202ENSMUST00000182989 885 ntTSL 5 BASIC11.83□□□□□ -0.52
Sox3P53784 Gm29087-201ENSMUST00000186462 645 ntTSL 5 BASIC11.83□□□□□ -0.52
Sox3P53784 Snhg8-201ENSMUST00000196466 448 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Sox3P53784 Gm44136-201ENSMUST00000203819 1106 ntBASIC11.83□□□□□ -0.52
Sox3P53784 Gm35082-202ENSMUST00000208164 525 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Sox3P53784 Gm8285-201ENSMUST00000208293 759 ntBASIC11.83□□□□□ -0.52
Sox3P53784 AC122305.4-201ENSMUST00000216159 1206 ntBASIC11.83□□□□□ -0.52
Sox3P53784 Spcs1-203ENSMUST00000226374 592 ntBASIC11.83□□□□□ -0.52
Sox3P53784 Snf8-201ENSMUST00000006217 1004 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox3P53784 Lce1e-201ENSMUST00000090867 711 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox3P53784 Pif1-202ENSMUST00000131483 3309 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox3P53784 Cerk-203ENSMUST00000156546 2162 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Sox3P53784 Gm45266-201ENSMUST00000210111 2173 ntBASIC11.83□□□□□ -0.52
Sox3P53784 Gm8798-201ENSMUST00000211877 1661 ntBASIC11.83□□□□□ -0.52
Sox3P53784 Rbpsuh-rs3-201ENSMUST00000182751 1441 ntBASIC11.83□□□□□ -0.52
Sox3P53784 Nckipsd-201ENSMUST00000035218 3360 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox3P53784 Map7-202ENSMUST00000116259 3831 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox3P53784 Fmo1-201ENSMUST00000046049 2388 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox3P53784 Cog6-201ENSMUST00000036665 3182 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox3P53784 Zfp148-202ENSMUST00000165418 9431 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox3P53784 Gm14866-201ENSMUST00000149206 2118 ntTSL 2 BASIC11.83□□□□□ -0.52
Sox3P53784 Ccpg1-208ENSMUST00000150826 2939 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox3P53784 Nupl1-206ENSMUST00000225111 2936 ntBASIC11.83□□□□□ -0.52
Sox3P53784 Kalrn-210ENSMUST00000114964 2693 ntTSL 5 BASIC11.83□□□□□ -0.52
Sox3P53784 Tfe3-205ENSMUST00000115678 2658 ntTSL 5 BASIC11.83□□□□□ -0.52
Sox3P53784 Rab11fip5-201ENSMUST00000060837 4035 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox3P53784 Grk4-202ENSMUST00000074651 3234 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Sox3P53784 Zmynd15-201ENSMUST00000039093 2804 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox3P53784 6330537M06Rik-201ENSMUST00000212384 1642 ntBASIC11.82□□□□□ -0.52
Sox3P53784 Cutal-201ENSMUST00000028228 2179 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Sox3P53784 Tmc8-204ENSMUST00000119455 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox3P53784 Spop-202ENSMUST00000107724 2881 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox3P53784 Faap100-201ENSMUST00000026448 3193 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox3P53784 Cadm1-203ENSMUST00000114547 4444 ntAPPRIS P4 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox3P53784 Gm44758-201ENSMUST00000206096 2068 ntBASIC11.82□□□□□ -0.52
Sox3P53784 Satb2-202ENSMUST00000114415 5805 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox3P53784 Itgb4-202ENSMUST00000068981 5584 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Sox3P53784 Gm16793-201ENSMUST00000181322 1680 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Sox3P53784 Sema4a-215ENSMUST00000169222 3084 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Sox3P53784 Rap1a-ps2-201ENSMUST00000118467 559 ntBASIC11.82□□□□□ -0.52
Sox3P53784 Gm6447-201ENSMUST00000118905 835 ntBASIC11.82□□□□□ -0.52
Sox3P53784 Gm8908-201ENSMUST00000121633 1024 ntBASIC11.82□□□□□ -0.52
Sox3P53784 Eif4e1b-204ENSMUST00000132005 706 ntTSL 2 BASIC11.82□□□□□ -0.52
Sox3P53784 Gm15966-201ENSMUST00000136853 480 ntTSL 3 BASIC11.82□□□□□ -0.52
Sox3P53784 P2rx4-204ENSMUST00000139631 1030 ntTSL 5 BASIC11.82□□□□□ -0.52
Sox3P53784 Nudt6-207ENSMUST00000141438 899 ntTSL 2 BASIC11.82□□□□□ -0.52
Sox3P53784 P2rx4-206ENSMUST00000142664 1111 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Sox3P53784 C230066G23Rik-201ENSMUST00000150195 650 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Sox3P53784 Gm17135-201ENSMUST00000167009 564 ntTSL 3 BASIC11.82□□□□□ -0.52
Sox3P53784 Gm17168-201ENSMUST00000169146 345 ntTSL 5 BASIC11.82□□□□□ -0.52
Sox3P53784 Ighv8-4-201ENSMUST00000178949 294 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Sox3P53784 Gm26740-201ENSMUST00000180456 358 ntTSL 3 BASIC11.82□□□□□ -0.52
Sox3P53784 Tmem176b-206ENSMUST00000203355 1202 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Sox3P53784 4930404N11Rik-201ENSMUST00000020456 691 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox3P53784 AC069562.3-201ENSMUST00000225387 587 ntBASIC11.82□□□□□ -0.52
Sox3P53784 AC123665.1-201ENSMUST00000228204 438 ntBASIC11.82□□□□□ -0.52
Sox3P53784 Trex2-201ENSMUST00000033738 1017 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox3P53784 Pxt1-201ENSMUST00000051526 710 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox3P53784 Adm2-201ENSMUST00000066991 1043 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox3P53784 Bcl2l1-202ENSMUST00000109820 2568 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox3P53784 Fbxo46-201ENSMUST00000053109 4873 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox3P53784 Lsm11-202ENSMUST00000129820 6453 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox3P53784 Egr1-202ENSMUST00000165033 3036 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Sox3P53784 Eif2ak1-201ENSMUST00000100487 4325 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox3P53784 Alpi-201ENSMUST00000113270 2337 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox3P53784 Rgs6-222ENSMUST00000202210 3069 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Sox3P53784 Etfrf1-203ENSMUST00000111721 1336 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox3P53784 Xrra1-202ENSMUST00000207855 1334 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Sox3P53784 Slc22a13b-ps-201ENSMUST00000173185 1458 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox3P53784 Ptpru-201ENSMUST00000030741 4416 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Sox3P53784 Pbxip1-201ENSMUST00000038942 4479 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox3P53784 Pla2g3-202ENSMUST00000064265 2566 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox3P53784 Aaas-201ENSMUST00000041208 1816 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox3P53784 Efemp2-209ENSMUST00000167371 1382 ntTSL 5 BASIC11.81□□□□□ -0.52
Sox3P53784 Gm21982-201ENSMUST00000146232 3821 ntTSL 2 BASIC11.81□□□□□ -0.52
Sox3P53784 Vmn1r198-203ENSMUST00000226909 6259 ntAPPRIS P2 BASIC11.81□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 61.7 ms