Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Ddx17-201ENSMUST00000054014 4761 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Rfx3P48381 Tbx4-203ENSMUST00000108047 3153 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
Rfx3P48381 Kcna1-201ENSMUST00000055168 4031 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Rfx3P48381 Aff3-203ENSMUST00000095027 5857 ntAPPRIS P2 TSL 5 BASIC11.13□□□□□ -0.63
Rfx3P48381 Pnpo-202ENSMUST00000107629 681 ntTSL 3 BASIC11.13□□□□□ -0.63
Rfx3P48381 Phlda2-201ENSMUST00000010904 757 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Rfx3P48381 Grin1-205ENSMUST00000114312 3838 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Rfx3P48381 Grin1-207ENSMUST00000114317 3809 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Rfx3P48381 Isg20-204ENSMUST00000121645 1087 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Rfx3P48381 Gm1335-201ENSMUST00000121653 386 ntBASIC11.13□□□□□ -0.63
Rfx3P48381 Cabp2-201ENSMUST00000159148 1030 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Rfx3P48381 Tmem205-202ENSMUST00000178988 862 ntAPPRIS P1 TSL 2 BASIC11.13□□□□□ -0.63
Rfx3P48381 Gm9299-201ENSMUST00000206392 1140 ntBASIC11.13□□□□□ -0.63
Rfx3P48381 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC11.13□□□□□ -0.63
Rfx3P48381 Gm32025-201ENSMUST00000217960 307 ntBASIC11.13□□□□□ -0.63
Rfx3P48381 CT030161.3-201ENSMUST00000218235 367 ntTSL 3 BASIC11.13□□□□□ -0.63
Rfx3P48381 AC152453.1-201ENSMUST00000218802 1254 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Rfx3P48381 AC165260.3-202ENSMUST00000224550 1031 ntBASIC11.13□□□□□ -0.63
Rfx3P48381 AC069562.3-201ENSMUST00000225387 587 ntBASIC11.13□□□□□ -0.63
Rfx3P48381 Treml1-201ENSMUST00000024792 1235 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Rfx3P48381 Gps2-201ENSMUST00000057884 1220 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Rfx3P48381 Nfic-203ENSMUST00000105321 6237 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Rfx3P48381 H3f3b-201ENSMUST00000016703 1993 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Rfx3P48381 Usp16-201ENSMUST00000026710 3205 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Rfx3P48381 Gtf2e1-201ENSMUST00000023525 3084 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Rfx3P48381 Dnmt3l-201ENSMUST00000000746 1676 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Rfx3P48381 Aldh1a7-201ENSMUST00000025656 2066 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Rfx3P48381 Stx18-203ENSMUST00000114126 3002 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Rfx3P48381 Tspan14-201ENSMUST00000047652 2475 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Rfx3P48381 Espn-201ENSMUST00000030785 3406 ntAPPRIS P2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Rfx3P48381 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
Rfx3P48381 Slc34a3-201ENSMUST00000006638 2183 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Rfx3P48381 Pnpla6-202ENSMUST00000111070 4496 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
Rfx3P48381 Wdr33-201ENSMUST00000025264 6206 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
Rfx3P48381 Grm4-202ENSMUST00000118489 2976 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Rfx3P48381 Gabbr1-203ENSMUST00000172792 4036 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Rfx3P48381 Cdh7-202ENSMUST00000112701 4945 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
Rfx3P48381 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Rfx3P48381 H2-DMb2-201ENSMUST00000041982 1347 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Rfx3P48381 Camta2-205ENSMUST00000119120 4460 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Rfx3P48381 Med1-202ENSMUST00000092735 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Rfx3P48381 Fbn2-201ENSMUST00000025497 10480 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
Rfx3P48381 Sun2-203ENSMUST00000100439 3768 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Rfx3P48381 Lef1-204ENSMUST00000106341 3357 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Rfx3P48381 Lef1-202ENSMUST00000066849 3398 ntAPPRIS ALT1 TSL 5 BASIC11.12□□□□□ -0.63
Rfx3P48381 Mat2b-202ENSMUST00000101347 2053 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Rfx3P48381 Tmc4-201ENSMUST00000038743 2310 ntAPPRIS P2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Rfx3P48381 Sp4-201ENSMUST00000026367 5694 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Rfx3P48381 Gm10339-203ENSMUST00000225409 1671 ntBASIC11.12□□□□□ -0.63
Rfx3P48381 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Rfx3P48381 Specc1-213ENSMUST00000202179 6676 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Rfx3P48381 Snap25-202ENSMUST00000110098 1014 ntAPPRIS ALT1 TSL 3 BASIC11.12□□□□□ -0.63
Rfx3P48381 Cdkn1a-202ENSMUST00000119901 748 ntAPPRIS P1 TSL 2 BASIC11.12□□□□□ -0.63
Rfx3P48381 Gm5863-201ENSMUST00000121760 1008 ntBASIC11.12□□□□□ -0.63
Rfx3P48381 Pisd-ps2-202ENSMUST00000142526 1175 ntBASIC11.12□□□□□ -0.63
Rfx3P48381 Gm16296-201ENSMUST00000159905 325 ntBASIC11.12□□□□□ -0.63
Rfx3P48381 Olfr455-201ENSMUST00000171307 954 ntAPPRIS P1 BASIC11.12□□□□□ -0.63
Rfx3P48381 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Rfx3P48381 9130604C24Rik-201ENSMUST00000197965 956 ntBASIC11.12□□□□□ -0.63
Rfx3P48381 Togaram1-201ENSMUST00000066296 6372 ntAPPRIS P2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Rfx3P48381 Rftn2-202ENSMUST00000114428 2012 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Rfx3P48381 Atg7-212ENSMUST00000182902 2543 ntAPPRIS P3 TSL 2 BASIC11.12□□□□□ -0.63
Rfx3P48381 Tor3a-201ENSMUST00000079625 3285 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Rfx3P48381 Ric3-201ENSMUST00000055993 5281 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
Rfx3P48381 Ciz1-204ENSMUST00000113334 2871 ntAPPRIS P3 TSL 5 BASIC11.12□□□□□ -0.63
Rfx3P48381 Clpx-201ENSMUST00000015501 2885 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Rfx3P48381 Gm26878-201ENSMUST00000181778 1644 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Rfx3P48381 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Rfx3P48381 Pdyn-201ENSMUST00000028883 2386 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Rfx3P48381 Rpap1-203ENSMUST00000110793 5458 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
Rfx3P48381 Rpe-202ENSMUST00000113995 2713 ntTSL 3 BASIC11.12□□□□□ -0.63
Rfx3P48381 Slc25a22-223ENSMUST00000201710 2565 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
Rfx3P48381 Xkr5-201ENSMUST00000055503 3176 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Rfx3P48381 Adcyap1-201ENSMUST00000064775 2088 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Rfx3P48381 Nars2-201ENSMUST00000044466 3778 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Rfx3P48381 Mmgt2-203ENSMUST00000129162 1828 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
Rfx3P48381 Kcnab2-201ENSMUST00000030768 3533 ntAPPRIS ALT1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Rfx3P48381 Gm14243-201ENSMUST00000131401 2172 ntTSL 2 BASIC11.11□□□□□ -0.63
Rfx3P48381 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Rfx3P48381 Serpine3-201ENSMUST00000171692 1402 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Rfx3P48381 Retreg1-206ENSMUST00000228306 1430 ntBASIC11.11□□□□□ -0.63
Rfx3P48381 Atg7-210ENSMUST00000182793 2459 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
Rfx3P48381 AC154639.1-201ENSMUST00000224393 2849 ntBASIC11.11□□□□□ -0.63
Rfx3P48381 Grm1-201ENSMUST00000044306 6930 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
Rfx3P48381 Mapkapk5-204ENSMUST00000111783 1513 ntAPPRIS ALT1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Rfx3P48381 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Rfx3P48381 Vps33b-201ENSMUST00000032749 2574 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Rfx3P48381 Klf11-201ENSMUST00000020982 4086 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Rfx3P48381 Mfsd4a-207ENSMUST00000159038 1957 ntAPPRIS P2 TSL 5 BASIC11.11□□□□□ -0.63
Rfx3P48381 Mylip-202ENSMUST00000222178 1954 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Rfx3P48381 Sufu-201ENSMUST00000039922 4522 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
Rfx3P48381 Gm12390-201ENSMUST00000117897 397 ntBASIC11.11□□□□□ -0.63
Rfx3P48381 Gm13394-201ENSMUST00000121658 1000 ntBASIC11.11□□□□□ -0.63
Rfx3P48381 Pelp1-202ENSMUST00000135148 562 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Rfx3P48381 Gm15201-201ENSMUST00000136472 1210 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Rfx3P48381 Gm12984-201ENSMUST00000145711 273 ntTSL 5 BASIC11.11□□□□□ -0.63
Rfx3P48381 Gm2639-201ENSMUST00000156881 1297 ntBASIC11.11□□□□□ -0.63
Rfx3P48381 Gm27682-201ENSMUST00000183930 110 ntBASIC11.11□□□□□ -0.63
Rfx3P48381 Ffar3-202ENSMUST00000185748 1234 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
Rfx3P48381 1700094J05Rik-202ENSMUST00000190491 997 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Retrieved 100 of 76,532 protein–RNA pairs in 35.5 ms