Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Gm44414-201ENSMUST00000203660 2109 ntBASIC16.34■□□□□ 0.21
Scn4aQ9ER60 Il1rn-204ENSMUST00000114487 2474 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Scn4aQ9ER60 Dnm1-201ENSMUST00000078352 3246 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Scn4aQ9ER60 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
Scn4aQ9ER60 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Scn4aQ9ER60 Myl2-203ENSMUST00000111751 889 ntAPPRIS P1 TSL 3 BASIC16.34■□□□□ 0.21
Scn4aQ9ER60 Sfi1-204ENSMUST00000118627 831 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Scn4aQ9ER60 Gm13422-201ENSMUST00000118834 504 ntBASIC16.34■□□□□ 0.21
Scn4aQ9ER60 Stx5a-219ENSMUST00000177373 995 ntTSL 5 BASIC16.34■□□□□ 0.21
Scn4aQ9ER60 Gm17514-201ENSMUST00000181863 1102 ntTSL 5 BASIC16.34■□□□□ 0.21
Scn4aQ9ER60 AC124613.1-201ENSMUST00000198711 88 ntBASIC16.34■□□□□ 0.21
Scn4aQ9ER60 Ube2d3-216ENSMUST00000199613 738 ntAPPRIS P2 TSL 3 BASIC16.34■□□□□ 0.21
Scn4aQ9ER60 3930402G23Rik-202ENSMUST00000208615 581 ntTSL 3 BASIC16.34■□□□□ 0.21
Scn4aQ9ER60 Fam228a-203ENSMUST00000220978 861 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
Scn4aQ9ER60 Gm7242-201ENSMUST00000221134 705 ntBASIC16.34■□□□□ 0.21
Scn4aQ9ER60 B230303A05Rik-204ENSMUST00000223006 748 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Scn4aQ9ER60 Fam83h-202ENSMUST00000170153 4534 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Scn4aQ9ER60 Hnrnpa2b1-204ENSMUST00000203220 1638 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Scn4aQ9ER60 Rinl-201ENSMUST00000059857 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Scn4aQ9ER60 Fam60a-201ENSMUST00000054080 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Scn4aQ9ER60 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Scn4aQ9ER60 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Scn4aQ9ER60 Pdp1-202ENSMUST00000095144 2506 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
Scn4aQ9ER60 Gm12247-201ENSMUST00000117585 670 ntBASIC16.33■□□□□ 0.21
Scn4aQ9ER60 Gm4943-201ENSMUST00000132879 424 ntBASIC16.33■□□□□ 0.21
Scn4aQ9ER60 Gm27440-201ENSMUST00000184785 107 ntBASIC16.33■□□□□ 0.21
Scn4aQ9ER60 Gm18001-201ENSMUST00000212023 688 ntBASIC16.33■□□□□ 0.21
Scn4aQ9ER60 Tpi-rs4-201ENSMUST00000213734 720 ntBASIC16.33■□□□□ 0.21
Scn4aQ9ER60 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Scn4aQ9ER60 Yap1-201ENSMUST00000065353 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Scn4aQ9ER60 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Scn4aQ9ER60 Armc6-201ENSMUST00000019679 2263 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Scn4aQ9ER60 Micalcl-201ENSMUST00000033033 2259 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Scn4aQ9ER60 Fcrls-201ENSMUST00000090986 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Scn4aQ9ER60 Slc6a20a-201ENSMUST00000040960 2732 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Scn4aQ9ER60 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Scn4aQ9ER60 A430018G15Rik-201ENSMUST00000124210 1314 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Scn4aQ9ER60 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Scn4aQ9ER60 Rab19-201ENSMUST00000031986 1575 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Scn4aQ9ER60 Igll1-201ENSMUST00000100136 870 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Scn4aQ9ER60 Nhp2-202ENSMUST00000127405 1042 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Scn4aQ9ER60 Gm11269-201ENSMUST00000157011 595 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Scn4aQ9ER60 Ubl5-211ENSMUST00000162303 505 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
Scn4aQ9ER60 Cd9-ps-201ENSMUST00000174687 650 ntBASIC16.33■□□□□ 0.2
Scn4aQ9ER60 1500015A07Rik-202ENSMUST00000184530 423 ntTSL 3 BASIC16.33■□□□□ 0.2
Scn4aQ9ER60 1700088E04Rik-211ENSMUST00000190730 691 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Scn4aQ9ER60 Ccl4-201ENSMUST00000019074 660 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Scn4aQ9ER60 Gm42751-201ENSMUST00000198065 559 ntBASIC16.33■□□□□ 0.2
Scn4aQ9ER60 Gm44882-201ENSMUST00000205702 802 ntBASIC16.33■□□□□ 0.2
Scn4aQ9ER60 Gm8255-201ENSMUST00000218693 305 ntBASIC16.33■□□□□ 0.2
Scn4aQ9ER60 Myoz2-201ENSMUST00000029761 1181 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Scn4aQ9ER60 Gm10228-201ENSMUST00000089105 532 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
Scn4aQ9ER60 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Scn4aQ9ER60 Arhgef1-202ENSMUST00000098683 3375 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.2
Scn4aQ9ER60 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Scn4aQ9ER60 9930014A18Rik-201ENSMUST00000180730 3074 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Scn4aQ9ER60 Rad18-204ENSMUST00000113182 2220 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Scn4aQ9ER60 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Scn4aQ9ER60 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Scn4aQ9ER60 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Scn4aQ9ER60 Pla2g15-204ENSMUST00000212963 2578 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Scn4aQ9ER60 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Scn4aQ9ER60 Pcdhgb8-202ENSMUST00000208907 2796 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Scn4aQ9ER60 Ctbs-201ENSMUST00000029840 2629 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Scn4aQ9ER60 Zc2hc1a-203ENSMUST00000193010 1420 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Scn4aQ9ER60 Ces2f-203ENSMUST00000212926 1430 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Scn4aQ9ER60 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Scn4aQ9ER60 Ostm1-202ENSMUST00000105497 770 ntTSL 2 BASIC16.32■□□□□ 0.2
Scn4aQ9ER60 Cat-202ENSMUST00000111168 779 ntTSL 3 BASIC16.32■□□□□ 0.2
Scn4aQ9ER60 Gm15912-201ENSMUST00000128914 578 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Scn4aQ9ER60 Gm7833-201ENSMUST00000183288 990 ntBASIC16.32■□□□□ 0.2
Scn4aQ9ER60 Kif4-ps-202ENSMUST00000185083 652 ntBASIC16.32■□□□□ 0.2
Scn4aQ9ER60 6720482G16Rik-201ENSMUST00000199552 1192 ntBASIC16.32■□□□□ 0.2
Scn4aQ9ER60 AC154347.2-201ENSMUST00000221223 715 ntTSL 3 BASIC16.32■□□□□ 0.2
Scn4aQ9ER60 AC121567.1-201ENSMUST00000227213 842 ntBASIC16.32■□□□□ 0.2
Scn4aQ9ER60 Catsperz-201ENSMUST00000057716 781 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Scn4aQ9ER60 Klk1b24-201ENSMUST00000073713 878 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Scn4aQ9ER60 Klk1b21-201ENSMUST00000085455 871 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Scn4aQ9ER60 Sumf2-204ENSMUST00000171300 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Scn4aQ9ER60 Rreb1-202ENSMUST00000110237 4617 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Scn4aQ9ER60 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
Scn4aQ9ER60 Zbed4-201ENSMUST00000041297 5425 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Scn4aQ9ER60 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Scn4aQ9ER60 Rbm47-206ENSMUST00000200775 3180 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Scn4aQ9ER60 Pfkfb3-213ENSMUST00000171188 2058 ntTSL 5 BASIC16.32■□□□□ 0.2
Scn4aQ9ER60 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Scn4aQ9ER60 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Scn4aQ9ER60 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Scn4aQ9ER60 Oprm1-215ENSMUST00000105607 2369 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Scn4aQ9ER60 Olfr157-202ENSMUST00000215442 1766 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Scn4aQ9ER60 Gm6158-201ENSMUST00000109467 904 ntBASIC16.31■□□□□ 0.2
Scn4aQ9ER60 Gm15636-201ENSMUST00000119205 668 ntBASIC16.31■□□□□ 0.2
Scn4aQ9ER60 AU015836-205ENSMUST00000163458 911 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Scn4aQ9ER60 Gm23647-201ENSMUST00000175042 109 ntBASIC16.31■□□□□ 0.2
Scn4aQ9ER60 Rn5s-201ENSMUST00000177555 119 ntBASIC16.31■□□□□ 0.2
Scn4aQ9ER60 n-R5s108-201ENSMUST00000177575 119 ntBASIC16.31■□□□□ 0.2
Scn4aQ9ER60 n-R5s121-201ENSMUST00000177589 119 ntBASIC16.31■□□□□ 0.2
Scn4aQ9ER60 n-R5s146-201ENSMUST00000177889 119 ntBASIC16.31■□□□□ 0.2
Scn4aQ9ER60 Gm22109-201ENSMUST00000177995 119 ntBASIC16.31■□□□□ 0.2
Scn4aQ9ER60 Gm22291-201ENSMUST00000178027 119 ntBASIC16.31■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 79.2 ms