Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Rpl30-201ENSMUST00000009039 570 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Vps53Q8CCB4 Gm27196-201ENSMUST00000184787 2582 ntBASIC14.38□□□□□ -0.11
Vps53Q8CCB4 Dnmt3l-201ENSMUST00000000746 1676 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Vps53Q8CCB4 Dgkg-201ENSMUST00000023578 2725 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Vps53Q8CCB4 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Vps53Q8CCB4 Zfp219-202ENSMUST00000166169 3017 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Vps53Q8CCB4 Dll1-201ENSMUST00000014917 3581 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Vps53Q8CCB4 Gm9333-201ENSMUST00000205452 1323 ntBASIC14.38□□□□□ -0.11
Vps53Q8CCB4 Ddx17-201ENSMUST00000054014 4761 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Vps53Q8CCB4 Togaram1-207ENSMUST00000223166 6386 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Vps53Q8CCB4 Lrrc74b-201ENSMUST00000023442 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Vps53Q8CCB4 Flnc-202ENSMUST00000101617 8939 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Vps53Q8CCB4 Rxfp3-201ENSMUST00000058007 4275 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Vps53Q8CCB4 Pex5-204ENSMUST00000112531 3075 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Vps53Q8CCB4 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Vps53Q8CCB4 Elovl3-201ENSMUST00000043739 1494 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Vps53Q8CCB4 Pbrm1-207ENSMUST00000112095 7907 ntTSL 5 BASIC14.37□□□□□ -0.11
Vps53Q8CCB4 Lrrc20-201ENSMUST00000049242 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Vps53Q8CCB4 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Vps53Q8CCB4 Nckipsd-201ENSMUST00000035218 3360 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Vps53Q8CCB4 Abhd14b-209ENSMUST00000216130 1624 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Vps53Q8CCB4 Extl3-201ENSMUST00000022550 5977 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Vps53Q8CCB4 Vmn1r193-202ENSMUST00000227457 6429 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
Vps53Q8CCB4 Trpm1-219ENSMUST00000206314 2323 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Vps53Q8CCB4 Nup210-201ENSMUST00000032179 7037 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Vps53Q8CCB4 Capn5-202ENSMUST00000107112 2232 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Vps53Q8CCB4 Gm38157-201ENSMUST00000194178 1698 ntBASIC14.37□□□□□ -0.11
Vps53Q8CCB4 Il2rg-201ENSMUST00000033664 1670 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Vps53Q8CCB4 Ppox-201ENSMUST00000073120 1821 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Vps53Q8CCB4 R3hdml-201ENSMUST00000109416 1094 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Vps53Q8CCB4 Pigp-205ENSMUST00000113917 805 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Vps53Q8CCB4 Rbm3-ps-201ENSMUST00000121422 465 ntBASIC14.37□□□□□ -0.11
Vps53Q8CCB4 1190007I07Rik-205ENSMUST00000185168 469 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
Vps53Q8CCB4 Ovol3-201ENSMUST00000189482 731 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Vps53Q8CCB4 Gm42838-201ENSMUST00000196503 439 ntTSL 5 BASIC14.37□□□□□ -0.11
Vps53Q8CCB4 Gm5869-201ENSMUST00000200248 1257 ntBASIC14.37□□□□□ -0.11
Vps53Q8CCB4 Gm45186-201ENSMUST00000206874 478 ntBASIC14.37□□□□□ -0.11
Vps53Q8CCB4 Kdelr1-203ENSMUST00000211234 832 ntTSL 2 BASIC14.37□□□□□ -0.11
Vps53Q8CCB4 Tmem108-206ENSMUST00000215136 724 ntTSL 3 BASIC14.37□□□□□ -0.11
Vps53Q8CCB4 Med27-201ENSMUST00000028139 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Vps53Q8CCB4 Odf4-201ENSMUST00000038932 1078 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Vps53Q8CCB4 Gmppb-201ENSMUST00000047947 1429 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Vps53Q8CCB4 Cd74-202ENSMUST00000097563 1410 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Vps53Q8CCB4 Mtr-201ENSMUST00000099856 8294 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Vps53Q8CCB4 Pex1-201ENSMUST00000006061 4433 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Vps53Q8CCB4 Ripor3-201ENSMUST00000099073 3580 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Vps53Q8CCB4 Zfp108-203ENSMUST00000206777 2562 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Vps53Q8CCB4 Spert-202ENSMUST00000164082 1560 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
Vps53Q8CCB4 Rassf8-201ENSMUST00000032388 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Vps53Q8CCB4 Insrr-201ENSMUST00000029711 5102 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Vps53Q8CCB4 Fam160a2-202ENSMUST00000074686 3212 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Vps53Q8CCB4 Lat2-205ENSMUST00000200998 1481 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Vps53Q8CCB4 4930429D17Rik-201ENSMUST00000198193 1624 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Vps53Q8CCB4 Bin3-201ENSMUST00000022680 1767 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Vps53Q8CCB4 Gpr176-201ENSMUST00000039160 3899 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Vps53Q8CCB4 Nhlrc2-201ENSMUST00000071423 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Vps53Q8CCB4 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC14.36□□□□□ -0.11
Vps53Q8CCB4 Atxn10-201ENSMUST00000163242 2425 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Vps53Q8CCB4 Cpne1-201ENSMUST00000079312 1683 ntTSL 5 BASIC14.36□□□□□ -0.11
Vps53Q8CCB4 Slc39a8-201ENSMUST00000029810 3203 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Vps53Q8CCB4 Cyth4-201ENSMUST00000043069 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Vps53Q8CCB4 Dync1li1-201ENSMUST00000047404 2601 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Vps53Q8CCB4 Pla2g2f-201ENSMUST00000030526 2465 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Vps53Q8CCB4 Coasy-202ENSMUST00000107308 2386 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Vps53Q8CCB4 Zfp12-203ENSMUST00000077485 4294 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Vps53Q8CCB4 AC117194.1-201ENSMUST00000224847 3002 ntBASIC14.36□□□□□ -0.11
Vps53Q8CCB4 0610010K14Rik-203ENSMUST00000100950 545 ntTSL 2 BASIC14.36□□□□□ -0.11
Vps53Q8CCB4 Rpl19-ps12-201ENSMUST00000121251 591 ntBASIC14.36□□□□□ -0.11
Vps53Q8CCB4 Tnfrsf18-203ENSMUST00000122001 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Vps53Q8CCB4 Tmem255b-202ENSMUST00000167505 1219 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Vps53Q8CCB4 Gm8176-201ENSMUST00000191297 1099 ntBASIC14.36□□□□□ -0.11
Vps53Q8CCB4 Gm9445-201ENSMUST00000207454 1285 ntBASIC14.36□□□□□ -0.11
Vps53Q8CCB4 Gm19963-201ENSMUST00000208413 1255 ntBASIC14.36□□□□□ -0.11
Vps53Q8CCB4 Gm13097-201ENSMUST00000210722 397 ntBASIC14.36□□□□□ -0.11
Vps53Q8CCB4 Nit2-201ENSMUST00000023432 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Vps53Q8CCB4 Crabp2-201ENSMUST00000005019 931 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Vps53Q8CCB4 Rnf7-201ENSMUST00000057500 1232 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Vps53Q8CCB4 Entpd5-203ENSMUST00000110272 4972 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Vps53Q8CCB4 Slc39a8-206ENSMUST00000180196 3383 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Vps53Q8CCB4 Pcca-201ENSMUST00000038374 2592 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Vps53Q8CCB4 Rlbp1-202ENSMUST00000179243 2142 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Vps53Q8CCB4 Stox2-209ENSMUST00000211882 9696 ntTSL 5 BASIC14.36□□□□□ -0.11
Vps53Q8CCB4 Capn3-203ENSMUST00000090028 2640 ntTSL 5 BASIC14.36□□□□□ -0.11
Vps53Q8CCB4 2900069G24Rik-201ENSMUST00000192780 1311 ntBASIC14.36□□□□□ -0.11
Vps53Q8CCB4 Rccd1-201ENSMUST00000047362 3336 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Vps53Q8CCB4 Fam13c-202ENSMUST00000105436 3380 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Vps53Q8CCB4 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Vps53Q8CCB4 Pbld2-201ENSMUST00000020262 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Vps53Q8CCB4 2810430I11Rik-201ENSMUST00000154246 3416 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Vps53Q8CCB4 Sh3pxd2a-201ENSMUST00000081619 10464 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Vps53Q8CCB4 Foxj3-202ENSMUST00000106310 4660 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Vps53Q8CCB4 Ncln-201ENSMUST00000020463 3118 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Vps53Q8CCB4 Nynrin-201ENSMUST00000100529 6990 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Vps53Q8CCB4 Camta2-202ENSMUST00000100933 4383 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Vps53Q8CCB4 Camta2-204ENSMUST00000108545 4377 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Vps53Q8CCB4 Camta2-206ENSMUST00000120261 4398 ntTSL 5 BASIC14.35□□□□□ -0.11
Vps53Q8CCB4 Jmjd8-205ENSMUST00000133595 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Vps53Q8CCB4 Prdm1-201ENSMUST00000039174 5281 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
Vps53Q8CCB4 Gm30725-201ENSMUST00000195170 1419 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Vps53Q8CCB4 Mest-202ENSMUST00000124665 2665 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 32.8 ms