Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Scube2-201ENSMUST00000007423 3571 ntTSL 2 BASIC16.84■□□□□ 0.29
Usp40Q8BWR4 Naaa-201ENSMUST00000113102 2414 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
Usp40Q8BWR4 Ifitm10-203ENSMUST00000105988 824 ntAPPRIS P4 TSL 2 BASIC16.84■□□□□ 0.29
Usp40Q8BWR4 Zfp157-203ENSMUST00000110912 886 ntTSL 3 BASIC16.84■□□□□ 0.29
Usp40Q8BWR4 Cdk2ap1-202ENSMUST00000111472 648 ntAPPRIS ALT1 TSL 5 BASIC16.84■□□□□ 0.29
Usp40Q8BWR4 Gm11683-201ENSMUST00000147006 918 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Usp40Q8BWR4 Gm23085-201ENSMUST00000157849 293 ntBASIC16.84■□□□□ 0.29
Usp40Q8BWR4 Gm28686-201ENSMUST00000187404 609 ntBASIC16.84■□□□□ 0.29
Usp40Q8BWR4 A430027H14Rik-202ENSMUST00000192797 618 ntTSL 2 BASIC16.84■□□□□ 0.29
Usp40Q8BWR4 Gm37835-201ENSMUST00000193305 361 ntBASIC16.84■□□□□ 0.29
Usp40Q8BWR4 Saa2-202ENSMUST00000210272 511 ntTSL 3 BASIC16.84■□□□□ 0.29
Usp40Q8BWR4 AC166992.1-201ENSMUST00000216356 565 ntBASIC16.84■□□□□ 0.29
Usp40Q8BWR4 Gm32635-201ENSMUST00000221493 1162 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Usp40Q8BWR4 AC154849.4-201ENSMUST00000224868 365 ntBASIC16.84■□□□□ 0.29
Usp40Q8BWR4 AC121960.1-201ENSMUST00000227982 564 ntBASIC16.84■□□□□ 0.29
Usp40Q8BWR4 Ngdn-201ENSMUST00000022815 1200 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Usp40Q8BWR4 Ginm1-202ENSMUST00000065124 300 ntBASIC16.84■□□□□ 0.29
Usp40Q8BWR4 Gm5965-201ENSMUST00000009191 588 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
Usp40Q8BWR4 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
Usp40Q8BWR4 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC16.84■□□□□ 0.29
Usp40Q8BWR4 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Usp40Q8BWR4 Ctnnb1-214ENSMUST00000178812 2702 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Usp40Q8BWR4 Mff-209ENSMUST00000160972 1358 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Usp40Q8BWR4 Rnf113a2-201ENSMUST00000183146 1383 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
Usp40Q8BWR4 5330439B14Rik-201ENSMUST00000194811 1392 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Usp40Q8BWR4 Gigyf2-201ENSMUST00000027475 5724 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
Usp40Q8BWR4 Ccdc159-202ENSMUST00000170304 1519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Usp40Q8BWR4 Rgs3-201ENSMUST00000065870 4698 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Usp40Q8BWR4 Cyb5rl-202ENSMUST00000106756 1604 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Usp40Q8BWR4 Efna1-202ENSMUST00000118587 1632 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Usp40Q8BWR4 Luc7l3-209ENSMUST00000166312 5244 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Usp40Q8BWR4 Gm43267-201ENSMUST00000199664 1796 ntBASIC16.84■□□□□ 0.29
Usp40Q8BWR4 Chrna9-201ENSMUST00000031108 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Usp40Q8BWR4 Dagla-201ENSMUST00000039327 5634 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
Usp40Q8BWR4 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC16.84■□□□□ 0.29
Usp40Q8BWR4 Uprt-201ENSMUST00000087867 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Usp40Q8BWR4 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Usp40Q8BWR4 Krtap4-8-201ENSMUST00000107439 983 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
Usp40Q8BWR4 Rab15-202ENSMUST00000118604 778 ntTSL 3 BASIC16.83■□□□□ 0.28
Usp40Q8BWR4 Sufu-204ENSMUST00000120778 1850 ntTSL 2 BASIC16.83■□□□□ 0.28
Usp40Q8BWR4 Rab15-203ENSMUST00000121716 739 ntTSL 3 BASIC16.83■□□□□ 0.28
Usp40Q8BWR4 C230034O21Rik-201ENSMUST00000153659 2836 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Usp40Q8BWR4 Spaca6-209ENSMUST00000172097 1073 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
Usp40Q8BWR4 Slc38a10-216ENSMUST00000179094 4052 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
Usp40Q8BWR4 Ssty2-201ENSMUST00000179136 684 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
Usp40Q8BWR4 Ssty2-202ENSMUST00000190565 1216 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Usp40Q8BWR4 Gm10152-201ENSMUST00000193475 1344 ntBASIC16.83■□□□□ 0.28
Usp40Q8BWR4 Gm2965-201ENSMUST00000198365 343 ntBASIC16.83■□□□□ 0.28
Usp40Q8BWR4 Gm13522-202ENSMUST00000209682 997 ntTSL 5 BASIC16.83■□□□□ 0.28
Usp40Q8BWR4 AC151275.1-201ENSMUST00000224870 585 ntBASIC16.83■□□□□ 0.28
Usp40Q8BWR4 Neil1-201ENSMUST00000034842 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Usp40Q8BWR4 Sde2-201ENSMUST00000038091 3213 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Usp40Q8BWR4 Gm6781-201ENSMUST00000038304 1242 ntBASIC16.83■□□□□ 0.28
Usp40Q8BWR4 Lhfpl1-201ENSMUST00000040084 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Usp40Q8BWR4 Lgals1-201ENSMUST00000089377 800 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Usp40Q8BWR4 Dmxl1-202ENSMUST00000180611 11319 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Usp40Q8BWR4 Dhx30-201ENSMUST00000062368 3806 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Usp40Q8BWR4 Crmp1-201ENSMUST00000031004 2906 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Usp40Q8BWR4 Tmcc2-206ENSMUST00000142609 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Usp40Q8BWR4 St6galnac6-202ENSMUST00000081879 2345 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Usp40Q8BWR4 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Usp40Q8BWR4 Npnt-203ENSMUST00000093971 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp40Q8BWR4 Hnrnpa2b1-203ENSMUST00000114459 1728 ntAPPRIS ALT1 TSL 5 BASIC16.82■□□□□ 0.28
Usp40Q8BWR4 AC173482.6-201ENSMUST00000225889 1741 ntBASIC16.82■□□□□ 0.28
Usp40Q8BWR4 Gm26677-201ENSMUST00000180553 1672 ntTSL 5 BASIC16.82■□□□□ 0.28
Usp40Q8BWR4 Gm29480-201ENSMUST00000188589 1655 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Usp40Q8BWR4 Cyp2a12-201ENSMUST00000075552 1681 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp40Q8BWR4 Fgf12-201ENSMUST00000100024 3065 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp40Q8BWR4 Mapkapk5-204ENSMUST00000111783 1513 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp40Q8BWR4 Fcna-201ENSMUST00000028307 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp40Q8BWR4 Taf6l-202ENSMUST00000010249 848 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Usp40Q8BWR4 Gm24891-201ENSMUST00000104391 136 ntBASIC16.82■□□□□ 0.28
Usp40Q8BWR4 D630008O14Rik-202ENSMUST00000149909 1043 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Usp40Q8BWR4 Ctdspl-202ENSMUST00000172464 798 ntAPPRIS ALT1 TSL 5 BASIC16.82■□□□□ 0.28
Usp40Q8BWR4 Mir6546-201ENSMUST00000184460 62 ntBASIC16.82■□□□□ 0.28
Usp40Q8BWR4 Gm3508-201ENSMUST00000186012 792 ntBASIC16.82■□□□□ 0.28
Usp40Q8BWR4 Creb1-209ENSMUST00000190348 1260 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Usp40Q8BWR4 Gm5051-201ENSMUST00000204085 485 ntBASIC16.82■□□□□ 0.28
Usp40Q8BWR4 Gm5705-201ENSMUST00000066241 711 ntBASIC16.82■□□□□ 0.28
Usp40Q8BWR4 Cd320-202ENSMUST00000087559 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp40Q8BWR4 Mybphl-201ENSMUST00000090563 1276 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp40Q8BWR4 Sprr2a2-202ENSMUST00000090871 722 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp40Q8BWR4 Gm37324-201ENSMUST00000194500 4504 ntBASIC16.82■□□□□ 0.28
Usp40Q8BWR4 Ccdc89-201ENSMUST00000061391 2093 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
Usp40Q8BWR4 Rftn2-202ENSMUST00000114428 2012 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Usp40Q8BWR4 Dbf4-204ENSMUST00000168500 2000 ntTSL 5 BASIC16.82■□□□□ 0.28
Usp40Q8BWR4 Hexim2-201ENSMUST00000062530 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp40Q8BWR4 Nsd3-208ENSMUST00000146919 3652 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Usp40Q8BWR4 Tmem104-202ENSMUST00000100235 4561 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp40Q8BWR4 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC16.82■□□□□ 0.28
Usp40Q8BWR4 Gdf6-201ENSMUST00000057613 3532 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp40Q8BWR4 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp40Q8BWR4 Itga6-202ENSMUST00000112101 4156 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
Usp40Q8BWR4 Clmp-201ENSMUST00000034522 4154 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp40Q8BWR4 4732471J01Rik-204ENSMUST00000206436 2430 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Usp40Q8BWR4 Mdm2-202ENSMUST00000105263 3145 ntTSL 5 BASIC16.81■□□□□ 0.28
Usp40Q8BWR4 Klhl26-205ENSMUST00000210250 2974 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Usp40Q8BWR4 Gm13003-201ENSMUST00000151040 2904 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Usp40Q8BWR4 Mocos-201ENSMUST00000068006 2884 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp40Q8BWR4 Dgkb-205ENSMUST00000221176 1439 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 43.5 ms