Protein–RNA interactions for Protein: Q3U827

Rnf180, E3 ubiquitin-protein ligase RNF180, mousemouse

Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf180Q3U827 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Rnf180Q3U827 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Rnf180Q3U827 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Rnf180Q3U827 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Rnf180Q3U827 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Rnf180Q3U827 Mroh1-202ENSMUST00000096385 5268 ntAPPRIS P4 TSL 1 (best) BASIC14.3□□□□□ -0.12
Rnf180Q3U827 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Rnf180Q3U827 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Rnf180Q3U827 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Rnf180Q3U827 1200007C13Rik-201ENSMUST00000143649 2455 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Rnf180Q3U827 Me2-201ENSMUST00000025439 2455 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Rnf180Q3U827 Ighv1-80-201ENSMUST00000103547 351 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Rnf180Q3U827 Gm6158-201ENSMUST00000109467 904 ntBASIC14.3□□□□□ -0.12
Rnf180Q3U827 Gm8019-201ENSMUST00000119317 587 ntBASIC14.3□□□□□ -0.12
Rnf180Q3U827 Anxa8-202ENSMUST00000120077 1208 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Rnf180Q3U827 Gm12961-201ENSMUST00000120507 1050 ntBASIC14.3□□□□□ -0.12
Rnf180Q3U827 Gm15886-201ENSMUST00000123155 1250 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Rnf180Q3U827 Tctex1d1-205ENSMUST00000140654 891 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
Rnf180Q3U827 Gm4895-201ENSMUST00000181646 1137 ntBASIC14.3□□□□□ -0.12
Rnf180Q3U827 Mrpl20-206ENSMUST00000185148 494 ntTSL 3 BASIC14.3□□□□□ -0.12
Rnf180Q3U827 Bcl2l12-205ENSMUST00000207755 605 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
Rnf180Q3U827 Myl6-203ENSMUST00000217776 562 ntTSL 3 BASIC14.3□□□□□ -0.12
Rnf180Q3U827 Pbld1-204ENSMUST00000219045 602 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Rnf180Q3U827 CT030166.5-201ENSMUST00000222249 420 ntBASIC14.3□□□□□ -0.12
Rnf180Q3U827 Gm10371-202ENSMUST00000228010 1081 ntBASIC14.3□□□□□ -0.12
Rnf180Q3U827 Olfr985-201ENSMUST00000060345 1116 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Rnf180Q3U827 Mok-203ENSMUST00000084974 1132 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Rnf180Q3U827 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Rnf180Q3U827 Capn3-201ENSMUST00000028748 2606 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Rnf180Q3U827 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Rnf180Q3U827 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Rnf180Q3U827 Slc39a11-203ENSMUST00000106633 2688 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Rnf180Q3U827 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Rnf180Q3U827 Fuca2-201ENSMUST00000060212 2007 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Rnf180Q3U827 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Rnf180Q3U827 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Rnf180Q3U827 Rspry1-207ENSMUST00000212729 2800 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Rnf180Q3U827 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Rnf180Q3U827 Gm7701-201ENSMUST00000163185 1479 ntBASIC14.3□□□□□ -0.12
Rnf180Q3U827 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Rnf180Q3U827 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
Rnf180Q3U827 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Rnf180Q3U827 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rnf180Q3U827 Clcc1-202ENSMUST00000106609 2043 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rnf180Q3U827 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Rnf180Q3U827 Lpgat1-201ENSMUST00000110855 7233 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rnf180Q3U827 Sephs1-201ENSMUST00000027973 5319 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rnf180Q3U827 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Rnf180Q3U827 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Rnf180Q3U827 Pank4-201ENSMUST00000030931 2508 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rnf180Q3U827 Gm23062-201ENSMUST00000102349 110 ntBASIC14.29□□□□□ -0.12
Rnf180Q3U827 Nifk-202ENSMUST00000112688 849 ntTSL 5 BASIC14.29□□□□□ -0.12
Rnf180Q3U827 Ptgds-203ENSMUST00000114259 775 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
Rnf180Q3U827 Gm12194-201ENSMUST00000117756 1012 ntBASIC14.29□□□□□ -0.12
Rnf180Q3U827 Olfr1267-ps1-201ENSMUST00000118957 930 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Rnf180Q3U827 2410152P15Rik-201ENSMUST00000137405 871 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Rnf180Q3U827 Gm14275-201ENSMUST00000152112 430 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Rnf180Q3U827 Gm16228-201ENSMUST00000162286 809 ntBASIC14.29□□□□□ -0.12
Rnf180Q3U827 Mir7088-201ENSMUST00000184227 86 ntBASIC14.29□□□□□ -0.12
Rnf180Q3U827 1810059H22Rik-207ENSMUST00000204809 289 ntTSL 3 BASIC14.29□□□□□ -0.12
Rnf180Q3U827 E230014E18Rik-201ENSMUST00000215920 859 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Rnf180Q3U827 AC164556.1-201ENSMUST00000221318 751 ntBASIC14.29□□□□□ -0.12
Rnf180Q3U827 AC138604.1-201ENSMUST00000226969 739 ntBASIC14.29□□□□□ -0.12
Rnf180Q3U827 Crygs-201ENSMUST00000040592 708 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rnf180Q3U827 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rnf180Q3U827 Foxh1-201ENSMUST00000037824 1306 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rnf180Q3U827 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rnf180Q3U827 Zfp568-203ENSMUST00000148442 4005 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rnf180Q3U827 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Rnf180Q3U827 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rnf180Q3U827 Lexm-202ENSMUST00000106788 1569 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rnf180Q3U827 Gm26635-201ENSMUST00000181077 3199 ntTSL 5 BASIC14.29□□□□□ -0.12
Rnf180Q3U827 Rassf10-201ENSMUST00000182858 3496 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Rnf180Q3U827 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rnf180Q3U827 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rnf180Q3U827 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rnf180Q3U827 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rnf180Q3U827 Plekha1-201ENSMUST00000048180 3321 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Rnf180Q3U827 Trav12-3-201ENSMUST00000103657 442 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Rnf180Q3U827 Rgs3-204ENSMUST00000107420 2752 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Rnf180Q3U827 1700025C18Rik-201ENSMUST00000109304 702 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rnf180Q3U827 Styxl1-203ENSMUST00000111162 726 ntTSL 5 BASIC14.28□□□□□ -0.12
Rnf180Q3U827 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rnf180Q3U827 Gm14320-201ENSMUST00000137275 1023 ntTSL 3 BASIC14.28□□□□□ -0.12
Rnf180Q3U827 Cdpf1-205ENSMUST00000150995 566 ntAPPRIS P1 TSL 3 BASIC14.28□□□□□ -0.12
Rnf180Q3U827 Rtbdn-204ENSMUST00000152378 2322 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rnf180Q3U827 Ccnb1-ps-201ENSMUST00000155338 1287 ntBASIC14.28□□□□□ -0.12
Rnf180Q3U827 Gm25569-201ENSMUST00000157175 131 ntBASIC14.28□□□□□ -0.12
Rnf180Q3U827 Ccnb1-207ENSMUST00000174038 1182 ntTSL 5 BASIC14.28□□□□□ -0.12
Rnf180Q3U827 Gm26513-201ENSMUST00000181802 2489 ntBASIC14.28□□□□□ -0.12
Rnf180Q3U827 1810008I18Rik-201ENSMUST00000185464 2419 ntBASIC14.28□□□□□ -0.12
Rnf180Q3U827 4930488N24Rik-201ENSMUST00000188802 1527 ntBASIC14.28□□□□□ -0.12
Rnf180Q3U827 Gm43726-201ENSMUST00000199110 775 ntBASIC14.28□□□□□ -0.12
Rnf180Q3U827 Gm39091-201ENSMUST00000206189 553 ntTSL 2 BASIC14.28□□□□□ -0.12
Rnf180Q3U827 Gm18035-201ENSMUST00000211962 589 ntBASIC14.28□□□□□ -0.12
Rnf180Q3U827 4930444K16Rik-201ENSMUST00000220438 1767 ntBASIC14.28□□□□□ -0.12
Rnf180Q3U827 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rnf180Q3U827 Fut11-201ENSMUST00000048016 4163 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rnf180Q3U827 Elmod1-201ENSMUST00000048409 2605 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rnf180Q3U827 Olfr63-201ENSMUST00000067840 955 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 60.7 ms