Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Col8a1Q00780 Krt26-201ENSMUST00000100482 2471 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Col8a1Q00780 Ints1-210ENSMUST00000200393 7070 ntAPPRIS P2 TSL 1 (best) BASIC10.56□□□□□ -0.72
Col8a1Q00780 Msh6-201ENSMUST00000005503 4254 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Col8a1Q00780 Kansl2-ps-201ENSMUST00000181818 1461 ntBASIC10.55□□□□□ -0.72
Col8a1Q00780 Nfatc4-201ENSMUST00000024179 3267 ntAPPRIS P3 TSL 1 (best) BASIC10.55□□□□□ -0.72
Col8a1Q00780 Muc6-202ENSMUST00000189314 5087 ntAPPRIS ALT2 TSL 1 (best) BASIC10.55□□□□□ -0.72
Col8a1Q00780 Serpinh1-203ENSMUST00000207849 2128 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Col8a1Q00780 Map6-205ENSMUST00000207883 3431 ntAPPRIS P3 TSL 1 (best) BASIC10.55□□□□□ -0.72
Col8a1Q00780 Igsf23-204ENSMUST00000208974 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC10.55□□□□□ -0.72
Col8a1Q00780 Dpp6-201ENSMUST00000071500 3826 ntAPPRIS P3 TSL 1 (best) BASIC10.55□□□□□ -0.72
Col8a1Q00780 Tmprss9-203ENSMUST00000219817 3581 ntAPPRIS P1 TSL 5 BASIC10.55□□□□□ -0.72
Col8a1Q00780 Gm14150-201ENSMUST00000122404 1354 ntBASIC10.55□□□□□ -0.72
Col8a1Q00780 A630076J17Rik-201ENSMUST00000179399 1358 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Col8a1Q00780 Gm43417-201ENSMUST00000201586 5207 ntBASIC10.55□□□□□ -0.72
Col8a1Q00780 Cd81-201ENSMUST00000037941 1533 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Col8a1Q00780 Zfp108-201ENSMUST00000072713 1929 ntAPPRIS ALT2 TSL 5 BASIC10.55□□□□□ -0.72
Col8a1Q00780 Gm9195-201ENSMUST00000208955 8870 ntAPPRIS P1 TSL 5 BASIC10.55□□□□□ -0.72
Col8a1Q00780 Cwc27-201ENSMUST00000022228 2071 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Col8a1Q00780 Yaf2-201ENSMUST00000080299 1676 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Col8a1Q00780 Chchd7-202ENSMUST00000108386 524 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Col8a1Q00780 Gm14644-201ENSMUST00000116671 647 ntBASIC10.55□□□□□ -0.72
Col8a1Q00780 Gm7851-201ENSMUST00000117574 323 ntBASIC10.55□□□□□ -0.72
Col8a1Q00780 5730416F02Rik-201ENSMUST00000120648 812 ntBASIC10.55□□□□□ -0.72
Col8a1Q00780 Chchd7-206ENSMUST00000121110 381 ntAPPRIS P1 TSL 5 BASIC10.55□□□□□ -0.72
Col8a1Q00780 Gm15881-201ENSMUST00000148792 942 ntBASIC10.55□□□□□ -0.72
Col8a1Q00780 Gm25881-201ENSMUST00000157783 103 ntBASIC10.55□□□□□ -0.72
Col8a1Q00780 2610027F03Rik-202ENSMUST00000186982 603 ntTSL 5 BASIC10.55□□□□□ -0.72
Col8a1Q00780 2310074N15Rik-201ENSMUST00000198276 582 ntBASIC10.55□□□□□ -0.72
Col8a1Q00780 4933408A14Rik-201ENSMUST00000199037 729 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
Col8a1Q00780 Gm31401-201ENSMUST00000207352 734 ntTSL 3 BASIC10.55□□□□□ -0.72
Col8a1Q00780 Gm45398-201ENSMUST00000210561 165 ntBASIC10.55□□□□□ -0.72
Col8a1Q00780 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC10.55□□□□□ -0.72
Col8a1Q00780 Rps12-203ENSMUST00000218107 584 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Col8a1Q00780 4921530L21Rik-202ENSMUST00000228913 1115 ntAPPRIS P1 BASIC10.55□□□□□ -0.72
Col8a1Q00780 Elovl1-202ENSMUST00000067896 1137 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Col8a1Q00780 Gm11555-201ENSMUST00000073126 492 ntTSL 5 BASIC10.55□□□□□ -0.72
Col8a1Q00780 Mir219a-1-201ENSMUST00000083621 110 ntBASIC10.55□□□□□ -0.72
Col8a1Q00780 Gm5965-201ENSMUST00000009191 588 ntAPPRIS P1 TSL 5 BASIC10.55□□□□□ -0.72
Col8a1Q00780 Rab7-201ENSMUST00000095048 1275 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Col8a1Q00780 Pfn4-204ENSMUST00000219503 4775 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
Col8a1Q00780 Phactr3-201ENSMUST00000103065 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC10.55□□□□□ -0.72
Col8a1Q00780 Fam131b-202ENSMUST00000095974 3992 ntAPPRIS ALT1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Col8a1Q00780 Nlrp6-204ENSMUST00000184560 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC10.55□□□□□ -0.72
Col8a1Q00780 Rtp3-201ENSMUST00000084922 1425 ntAPPRIS P1 TSL 5 BASIC10.55□□□□□ -0.72
Col8a1Q00780 Ctsl-201ENSMUST00000021933 1971 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Col8a1Q00780 Kars-202ENSMUST00000093120 2131 ntAPPRIS ALT2 TSL 1 (best) BASIC10.55□□□□□ -0.72
Col8a1Q00780 Arhgef1-203ENSMUST00000117419 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC10.55□□□□□ -0.72
Col8a1Q00780 Thegl-201ENSMUST00000031161 1719 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Col8a1Q00780 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC10.55□□□□□ -0.72
Col8a1Q00780 Colgalt2-201ENSMUST00000044311 4093 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Col8a1Q00780 Myo18a-210ENSMUST00000130305 5450 ntAPPRIS ALT2 TSL 5 BASIC10.55□□□□□ -0.72
Col8a1Q00780 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC10.55□□□□□ -0.72
Col8a1Q00780 Platr7-201ENSMUST00000181466 1334 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
Col8a1Q00780 Pfkfb3-212ENSMUST00000170196 2163 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
Col8a1Q00780 Zcwpw2-202ENSMUST00000187329 1469 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
Col8a1Q00780 Gm9924-202ENSMUST00000192760 2311 ntBASIC10.55□□□□□ -0.72
Col8a1Q00780 Zbtb49-202ENSMUST00000114113 2645 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Col8a1Q00780 Zeb2-201ENSMUST00000028229 5335 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Col8a1Q00780 Sec23b-201ENSMUST00000028916 2779 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Col8a1Q00780 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Col8a1Q00780 Gm29724-201ENSMUST00000214688 3062 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Col8a1Q00780 Phyhd1-202ENSMUST00000091132 1353 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Col8a1Q00780 Tmem132e-202ENSMUST00000092852 4105 ntAPPRIS ALT2 TSL 2 BASIC10.54□□□□□ -0.72
Col8a1Q00780 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Col8a1Q00780 Tmem104-202ENSMUST00000100235 4561 ntAPPRIS ALT1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Col8a1Q00780 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC10.54□□□□□ -0.72
Col8a1Q00780 AL670603.1-201ENSMUST00000216692 1535 ntAPPRIS P1 TSL 5 BASIC10.54□□□□□ -0.72
Col8a1Q00780 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC10.54□□□□□ -0.72
Col8a1Q00780 Tmem104-201ENSMUST00000061450 4564 ntAPPRIS P2 TSL 1 (best) BASIC10.54□□□□□ -0.72
Col8a1Q00780 Pitpnm3-202ENSMUST00000108508 6450 ntAPPRIS ALT2 TSL 1 (best) BASIC10.54□□□□□ -0.72
Col8a1Q00780 Bpifb6-201ENSMUST00000088955 1669 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Col8a1Q00780 Tmem51os1-204ENSMUST00000153023 3440 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Col8a1Q00780 Igf2-201ENSMUST00000000033 3708 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Col8a1Q00780 Acadsb-201ENSMUST00000015829 6081 ntAPPRIS P2 TSL 1 (best) BASIC10.54□□□□□ -0.72
Col8a1Q00780 Ptn-202ENSMUST00000201321 2558 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Col8a1Q00780 Zeb2-212ENSMUST00000176438 9124 ntAPPRIS P2 TSL 5 BASIC10.54□□□□□ -0.72
Col8a1Q00780 Syne3-203ENSMUST00000109927 5263 ntAPPRIS ALT2 TSL 5 BASIC10.54□□□□□ -0.72
Col8a1Q00780 Ighv10-3-201ENSMUST00000103495 377 ntAPPRIS P1 BASIC10.54□□□□□ -0.72
Col8a1Q00780 Gng12-205ENSMUST00000114226 1155 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Col8a1Q00780 Gm11892-201ENSMUST00000117711 1202 ntBASIC10.54□□□□□ -0.72
Col8a1Q00780 Ywhaq-ps2-201ENSMUST00000117738 643 ntBASIC10.54□□□□□ -0.72
Col8a1Q00780 Gm12969-201ENSMUST00000120199 1004 ntBASIC10.54□□□□□ -0.72
Col8a1Q00780 Gm15479-201ENSMUST00000139309 1133 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Col8a1Q00780 Prdx5-203ENSMUST00000149261 755 ntAPPRIS ALT2 TSL 2 BASIC10.54□□□□□ -0.72
Col8a1Q00780 Gm10785-201ENSMUST00000156242 1583 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Col8a1Q00780 Crhr2-204ENSMUST00000164012 1263 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Col8a1Q00780 Gm20535-201ENSMUST00000173157 1268 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Col8a1Q00780 Gm5733-201ENSMUST00000190232 939 ntBASIC10.54□□□□□ -0.72
Col8a1Q00780 Gm42920-201ENSMUST00000196616 409 ntTSL 3 BASIC10.54□□□□□ -0.72
Col8a1Q00780 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC10.54□□□□□ -0.72
Col8a1Q00780 Mrnip-201ENSMUST00000020647 1142 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Col8a1Q00780 Gm31479-201ENSMUST00000209936 522 ntTSL 3 BASIC10.54□□□□□ -0.72
Col8a1Q00780 Tpd52l1-203ENSMUST00000213639 827 ntAPPRIS ALT2 TSL 2 BASIC10.54□□□□□ -0.72
Col8a1Q00780 AC159376.1-201ENSMUST00000218504 630 ntBASIC10.54□□□□□ -0.72
Col8a1Q00780 AC171241.1-201ENSMUST00000228144 1166 ntBASIC10.54□□□□□ -0.72
Col8a1Q00780 Psph-201ENSMUST00000031399 1733 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Col8a1Q00780 Calca-201ENSMUST00000032906 994 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Col8a1Q00780 Cmtm2b-201ENSMUST00000041973 880 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Col8a1Q00780 Cox5a-201ENSMUST00000000090 645 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Retrieved 100 of 76,532 protein–RNA pairs in 43.5 ms