Protein–RNA interactions for Protein: P79621

Ciita, MHC class II transactivator, mousemouse

Predictions only

Length 1,155 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CiitaP79621 Ccdc183-201ENSMUST00000028309 1719 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
CiitaP79621 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
CiitaP79621 Sntb1-201ENSMUST00000039769 4919 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CiitaP79621 Tspyl3-201ENSMUST00000099194 3072 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
CiitaP79621 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CiitaP79621 Ppp4r3b-202ENSMUST00000102856 2410 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CiitaP79621 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC13.35□□□□□ -0.27
CiitaP79621 St6galnac6-202ENSMUST00000081879 2345 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CiitaP79621 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CiitaP79621 Proser3-206ENSMUST00000215288 2465 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
CiitaP79621 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CiitaP79621 Gm10767-202ENSMUST00000168767 2067 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CiitaP79621 Mrps30-201ENSMUST00000022245 3319 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CiitaP79621 AC160405.1-201ENSMUST00000218207 1545 ntBASIC13.35□□□□□ -0.27
CiitaP79621 Mfn2-203ENSMUST00000105715 4043 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CiitaP79621 Zfp433-202ENSMUST00000200889 2384 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CiitaP79621 Gm32687-201ENSMUST00000220314 2379 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CiitaP79621 Pex5-204ENSMUST00000112531 3075 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CiitaP79621 Fam49b-201ENSMUST00000063838 3797 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CiitaP79621 Gm5780-201ENSMUST00000217774 1834 ntBASIC13.35□□□□□ -0.27
CiitaP79621 Gm23200-201ENSMUST00000104379 132 ntBASIC13.35□□□□□ -0.27
CiitaP79621 Tmem50a-202ENSMUST00000105863 719 ntAPPRIS P1 TSL 3 BASIC13.35□□□□□ -0.27
CiitaP79621 Gm12380-201ENSMUST00000119012 544 ntBASIC13.35□□□□□ -0.27
CiitaP79621 Dnajb6-202ENSMUST00000012734 1024 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CiitaP79621 Bnip3-203ENSMUST00000130500 719 ntTSL 2 BASIC13.35□□□□□ -0.27
CiitaP79621 Atp10d-206ENSMUST00000169617 761 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CiitaP79621 2810405F17Rik-201ENSMUST00000189334 1117 ntBASIC13.35□□□□□ -0.27
CiitaP79621 Washc3-201ENSMUST00000020248 1052 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
CiitaP79621 Gm32635-201ENSMUST00000221493 1162 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CiitaP79621 Ggps1-204ENSMUST00000221713 667 ntTSL 3 BASIC13.35□□□□□ -0.27
CiitaP79621 Nmral1-201ENSMUST00000074970 1155 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CiitaP79621 Ifi27-205ENSMUST00000085065 977 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CiitaP79621 Fam227a-204ENSMUST00000187519 2283 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CiitaP79621 AC123619.2-202ENSMUST00000225097 1568 ntBASIC13.35□□□□□ -0.27
CiitaP79621 Eef1akmt3-201ENSMUST00000116231 2719 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
CiitaP79621 Hnrnpa2b1-203ENSMUST00000114459 1728 ntAPPRIS ALT1 TSL 5 BASIC13.35□□□□□ -0.27
CiitaP79621 4930488B22Rik-201ENSMUST00000172500 1722 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CiitaP79621 Sppl2a-201ENSMUST00000028844 5616 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CiitaP79621 Gm8038-201ENSMUST00000164674 2044 ntBASIC13.35□□□□□ -0.27
CiitaP79621 Lnx1-206ENSMUST00000121690 2302 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CiitaP79621 Arhgap33-207ENSMUST00000208538 4372 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
CiitaP79621 Nr3c1-203ENSMUST00000115567 6436 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CiitaP79621 Myh3-202ENSMUST00000108689 6031 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
CiitaP79621 D930032P07Rik-201ENSMUST00000181393 1314 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CiitaP79621 Serinc2-202ENSMUST00000120126 1452 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
CiitaP79621 Gm16010-202ENSMUST00000145410 4427 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CiitaP79621 Fn1-211ENSMUST00000187938 7965 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CiitaP79621 Wac-216ENSMUST00000171486 1608 ntTSL 5 BASIC13.35□□□□□ -0.27
CiitaP79621 Klhl26-205ENSMUST00000210250 2974 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CiitaP79621 Llgl2-201ENSMUST00000103032 3551 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
CiitaP79621 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CiitaP79621 Fbxl12-203ENSMUST00000131128 4182 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CiitaP79621 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CiitaP79621 Ptpn1-201ENSMUST00000029053 4213 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CiitaP79621 Jade1-204ENSMUST00000170711 2896 ntTSL 5 BASIC13.34□□□□□ -0.27
CiitaP79621 Gpat3-201ENSMUST00000031255 2884 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CiitaP79621 1700003D09Rik-201ENSMUST00000141929 1389 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CiitaP79621 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
CiitaP79621 Gm29724-201ENSMUST00000214688 3062 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CiitaP79621 Slc14a1-203ENSMUST00000160639 2047 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
CiitaP79621 Mfsd13b-201ENSMUST00000033166 1883 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
CiitaP79621 AC154671.1-201ENSMUST00000228617 1578 ntBASIC13.34□□□□□ -0.27
CiitaP79621 Atg7-212ENSMUST00000182902 2543 ntAPPRIS P3 TSL 2 BASIC13.34□□□□□ -0.27
CiitaP79621 CU062626.3-201ENSMUST00000225522 1411 ntBASIC13.34□□□□□ -0.27
CiitaP79621 Gm23949-201ENSMUST00000104027 127 ntBASIC13.34□□□□□ -0.27
CiitaP79621 Gm16066-201ENSMUST00000118575 1086 ntTSL 3 BASIC13.34□□□□□ -0.27
CiitaP79621 Retn-202ENSMUST00000169234 1139 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
CiitaP79621 Rps13-ps2-201ENSMUST00000182017 453 ntBASIC13.34□□□□□ -0.27
CiitaP79621 Gm27552-201ENSMUST00000183351 62 ntBASIC13.34□□□□□ -0.27
CiitaP79621 Gm27844-201ENSMUST00000183613 62 ntBASIC13.34□□□□□ -0.27
CiitaP79621 Gm17087-201ENSMUST00000184183 471 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
CiitaP79621 Gm29615-201ENSMUST00000185371 697 ntBASIC13.34□□□□□ -0.27
CiitaP79621 Gm28224-201ENSMUST00000186078 697 ntBASIC13.34□□□□□ -0.27
CiitaP79621 Gm29001-201ENSMUST00000186177 697 ntBASIC13.34□□□□□ -0.27
CiitaP79621 Gm28292-201ENSMUST00000186593 697 ntBASIC13.34□□□□□ -0.27
CiitaP79621 Gm28101-201ENSMUST00000187608 697 ntBASIC13.34□□□□□ -0.27
CiitaP79621 Gm29076-201ENSMUST00000187689 697 ntBASIC13.34□□□□□ -0.27
CiitaP79621 Gm28302-201ENSMUST00000187931 697 ntBASIC13.34□□□□□ -0.27
CiitaP79621 Gm28646-201ENSMUST00000188220 697 ntBASIC13.34□□□□□ -0.27
CiitaP79621 Gm28205-201ENSMUST00000189177 697 ntBASIC13.34□□□□□ -0.27
CiitaP79621 Gm29032-201ENSMUST00000189797 697 ntBASIC13.34□□□□□ -0.27
CiitaP79621 Gm28695-201ENSMUST00000190300 697 ntBASIC13.34□□□□□ -0.27
CiitaP79621 Gm37448-201ENSMUST00000192795 697 ntBASIC13.34□□□□□ -0.27
CiitaP79621 Gm43962-201ENSMUST00000203898 190 ntBASIC13.34□□□□□ -0.27
CiitaP79621 Gm45799-208ENSMUST00000211054 490 ntAPPRIS P2 TSL 3 BASIC13.34□□□□□ -0.27
CiitaP79621 Olfr1347-205ENSMUST00000220413 964 ntBASIC13.34□□□□□ -0.27
CiitaP79621 Mcpt1-201ENSMUST00000022836 1014 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CiitaP79621 Csnk2b-201ENSMUST00000025246 961 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CiitaP79621 Olfr1347-201ENSMUST00000036357 964 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
CiitaP79621 Gm5455-201ENSMUST00000058710 715 ntBASIC13.34□□□□□ -0.27
CiitaP79621 Rpl10a-ps2-201ENSMUST00000071184 642 ntBASIC13.34□□□□□ -0.27
CiitaP79621 Gm45278-201ENSMUST00000209650 2414 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CiitaP79621 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC13.34□□□□□ -0.27
CiitaP79621 4930554G24Rik-201ENSMUST00000126260 1603 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CiitaP79621 Sgce-209ENSMUST00000133306 1619 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CiitaP79621 Henmt1-205ENSMUST00000196533 1491 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CiitaP79621 Gm36635-201ENSMUST00000221152 1332 ntTSL 5 BASIC13.34□□□□□ -0.27
CiitaP79621 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CiitaP79621 C77080-203ENSMUST00000106051 5049 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
CiitaP79621 Zfp61-208ENSMUST00000165241 1668 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 61 ms