Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Gabpb1-204ENSMUST00000103227 2751 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sox3P53784 Arhgap27-204ENSMUST00000107024 3976 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
Sox3P53784 Gm20605-201ENSMUST00000177545 4464 ntAPPRIS P1 TSL 2 BASIC11.86□□□□□ -0.51
Sox3P53784 Rsbn1l-202ENSMUST00000196780 7651 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sox3P53784 Ppp1r18-203ENSMUST00000127442 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sox3P53784 Dync1li1-201ENSMUST00000047404 2601 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sox3P53784 Tcea1-201ENSMUST00000081551 2547 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sox3P53784 Adra1a-206ENSMUST00000225182 2337 ntBASIC11.86□□□□□ -0.51
Sox3P53784 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sox3P53784 Mlx-202ENSMUST00000107302 1826 ntAPPRIS ALT1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sox3P53784 Dgcr2-203ENSMUST00000117082 2987 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Sox3P53784 Ccng2-202ENSMUST00000121127 2570 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sox3P53784 Gm19434-201ENSMUST00000204330 2573 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Sox3P53784 Gm16278-201ENSMUST00000148064 2071 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Sox3P53784 Lztr1-201ENSMUST00000023444 3112 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sox3P53784 Gm26677-201ENSMUST00000180553 1672 ntTSL 5 BASIC11.85□□□□□ -0.51
Sox3P53784 Dnajc30-201ENSMUST00000071263 1661 ntAPPRIS P1 BASIC11.85□□□□□ -0.51
Sox3P53784 Slc6a20a-201ENSMUST00000040960 2732 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sox3P53784 Sqle-202ENSMUST00000100640 2636 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Sox3P53784 Fosb-205ENSMUST00000208326 3654 ntTSL 5 BASIC11.85□□□□□ -0.51
Sox3P53784 Oxr1-203ENSMUST00000090096 4515 ntTSL 5 BASIC11.85□□□□□ -0.51
Sox3P53784 D730001G18Rik-202ENSMUST00000191407 1494 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sox3P53784 Apbb2-215ENSMUST00000162349 3362 ntAPPRIS P3 TSL 5 BASIC11.85□□□□□ -0.51
Sox3P53784 Apbb2-201ENSMUST00000087256 3362 ntAPPRIS ALT1 TSL 5 BASIC11.85□□□□□ -0.51
Sox3P53784 Lipe-208ENSMUST00000206861 3171 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sox3P53784 Slc29a1-204ENSMUST00000163492 2216 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sox3P53784 Ahi1-201ENSMUST00000105525 4851 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sox3P53784 Cacna1g-204ENSMUST00000107785 7523 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
Sox3P53784 Osbp2-203ENSMUST00000102950 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sox3P53784 Gm16481-201ENSMUST00000119074 1227 ntBASIC11.85□□□□□ -0.51
Sox3P53784 Gm15547-201ENSMUST00000122152 333 ntBASIC11.85□□□□□ -0.51
Sox3P53784 4930506C21Rik-203ENSMUST00000130639 909 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Sox3P53784 Dnajc25-204ENSMUST00000152199 1141 ntTSL 5 BASIC11.85□□□□□ -0.51
Sox3P53784 Gm454-201ENSMUST00000160126 751 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Sox3P53784 Gm28727-201ENSMUST00000176549 443 ntTSL 3 BASIC11.85□□□□□ -0.51
Sox3P53784 Rbakdn-201ENSMUST00000198334 520 ntTSL 2 BASIC11.85□□□□□ -0.51
Sox3P53784 Gm19817-201ENSMUST00000199764 2132 ntBASIC11.85□□□□□ -0.51
Sox3P53784 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC11.85□□□□□ -0.51
Sox3P53784 Ceacam1-209ENSMUST00000206687 1061 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Sox3P53784 Cotl1-203ENSMUST00000211873 826 ntTSL 5 BASIC11.85□□□□□ -0.51
Sox3P53784 AC122876.1-201ENSMUST00000217619 825 ntBASIC11.85□□□□□ -0.51
Sox3P53784 Myl6-205ENSMUST00000217969 608 ntTSL 2 BASIC11.85□□□□□ -0.51
Sox3P53784 Gm31793-201ENSMUST00000218557 415 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Sox3P53784 AC161537.1-201ENSMUST00000226199 1015 ntBASIC11.85□□□□□ -0.51
Sox3P53784 Ly6g5c-201ENSMUST00000037849 509 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sox3P53784 Nme8-202ENSMUST00000091763 2122 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sox3P53784 Top2b-201ENSMUST00000017629 10335 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sox3P53784 Vipr1-201ENSMUST00000035115 4902 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sox3P53784 Btnl2-202ENSMUST00000178562 2563 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
Sox3P53784 Btnl2-201ENSMUST00000025198 2564 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sox3P53784 D030025P21Rik-202ENSMUST00000220643 3987 ntBASIC11.85□□□□□ -0.51
Sox3P53784 Olfr533-206ENSMUST00000217179 2825 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
Sox3P53784 Hspa4l-201ENSMUST00000108086 2744 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Sox3P53784 Zfp429-201ENSMUST00000109732 2056 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sox3P53784 BC055324-201ENSMUST00000045876 3179 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sox3P53784 Rbm20-204ENSMUST00000164202 6592 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
Sox3P53784 Zscan20-202ENSMUST00000097877 5364 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sox3P53784 Cenpl-202ENSMUST00000111618 1996 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
Sox3P53784 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sox3P53784 Kcnt1-201ENSMUST00000037580 5881 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sox3P53784 Plk-ps1-201ENSMUST00000119494 1787 ntBASIC11.84□□□□□ -0.51
Sox3P53784 Slc25a5-ps-202ENSMUST00000223716 1786 ntBASIC11.84□□□□□ -0.51
Sox3P53784 Thoc5-202ENSMUST00000101615 2116 ntTSL 5 BASIC11.84□□□□□ -0.51
Sox3P53784 Sesn2-201ENSMUST00000030724 3475 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sox3P53784 Sorcs1-205ENSMUST00000209413 4398 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Sox3P53784 Gm10451-201ENSMUST00000101281 1598 ntTSL 2 BASIC11.84□□□□□ -0.51
Sox3P53784 AC123834.1-201ENSMUST00000225346 2043 ntBASIC11.84□□□□□ -0.51
Sox3P53784 Atp6v1h-201ENSMUST00000044369 2049 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sox3P53784 Acin1-208ENSMUST00000126166 2369 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Sox3P53784 Glo1-201ENSMUST00000024823 1935 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sox3P53784 Gm44775-201ENSMUST00000207266 1456 ntBASIC11.84□□□□□ -0.51
Sox3P53784 Tcf4-230ENSMUST00000201205 2270 ntTSL 5 BASIC11.84□□□□□ -0.51
Sox3P53784 Zufsp-201ENSMUST00000048222 2991 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Sox3P53784 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC11.84□□□□□ -0.51
Sox3P53784 Ccdc30-202ENSMUST00000063642 2534 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sox3P53784 Uggt2-212ENSMUST00000156203 6456 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Sox3P53784 Otop1-202ENSMUST00000114099 3141 ntAPPRIS P5 TSL 5 BASIC11.84□□□□□ -0.51
Sox3P53784 Rhbdl2-202ENSMUST00000106204 1120 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Sox3P53784 Gm13996-201ENSMUST00000118456 430 ntBASIC11.84□□□□□ -0.51
Sox3P53784 Gm15131-201ENSMUST00000119124 595 ntBASIC11.84□□□□□ -0.51
Sox3P53784 Mrps17-205ENSMUST00000119985 859 ntAPPRIS P1 TSL 2 BASIC11.84□□□□□ -0.51
Sox3P53784 Gm13716-201ENSMUST00000126401 808 ntTSL 5 BASIC11.84□□□□□ -0.51
Sox3P53784 Nr2f1-203ENSMUST00000127137 991 ntTSL 5 BASIC11.84□□□□□ -0.51
Sox3P53784 Gm27552-201ENSMUST00000183351 62 ntBASIC11.84□□□□□ -0.51
Sox3P53784 Gm27844-201ENSMUST00000183613 62 ntBASIC11.84□□□□□ -0.51
Sox3P53784 Gm44126-201ENSMUST00000204831 514 ntBASIC11.84□□□□□ -0.51
Sox3P53784 Majin-201ENSMUST00000025699 1239 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Sox3P53784 Abhd14b-209ENSMUST00000216130 1624 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Sox3P53784 Insrr-201ENSMUST00000029711 5102 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sox3P53784 Gm26770-201ENSMUST00000180586 2237 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Sox3P53784 4930488N24Rik-201ENSMUST00000188802 1527 ntBASIC11.84□□□□□ -0.51
Sox3P53784 Gm36864-203ENSMUST00000223070 1513 ntAPPRIS P5 TSL 5 BASIC11.84□□□□□ -0.51
Sox3P53784 Rspo3-201ENSMUST00000092623 3085 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sox3P53784 Actrt2-201ENSMUST00000060062 1435 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
Sox3P53784 Cd74-202ENSMUST00000097563 1410 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sox3P53784 Nbeal2-211ENSMUST00000196488 8599 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Sox3P53784 Acly-203ENSMUST00000107389 4426 ntAPPRIS ALT1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sox3P53784 Rasa3-201ENSMUST00000117551 4404 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sox3P53784 D830024N08Rik-201ENSMUST00000212132 2899 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Sox3P53784 Nmbr-201ENSMUST00000020015 1599 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 59.4 ms