Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Gm37793-201ENSMUST00000195548 695 ntBASIC18.66■□□□□ 0.58
Cux1P53564 Them5-201ENSMUST00000029794 1251 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cux1P53564 Tbca-201ENSMUST00000046644 559 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cux1P53564 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC18.66■□□□□ 0.58
Cux1P53564 Brd4-202ENSMUST00000114475 2731 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Cux1P53564 Pycr1-206ENSMUST00000170556 2914 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cux1P53564 Clstn2-202ENSMUST00000162295 4174 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Cux1P53564 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Cux1P53564 AC159195.1-201ENSMUST00000225867 2086 ntBASIC18.66■□□□□ 0.58
Cux1P53564 Hnrnpf-209ENSMUST00000180020 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cux1P53564 Syt2-204ENSMUST00000188842 3386 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cux1P53564 CT030684.3-201ENSMUST00000227308 2445 ntBASIC18.66■□□□□ 0.58
Cux1P53564 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cux1P53564 Tfe3-205ENSMUST00000115678 2658 ntTSL 5 BASIC18.65■□□□□ 0.58
Cux1P53564 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cux1P53564 Fam45a-202ENSMUST00000119633 2267 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Cux1P53564 Elovl6-202ENSMUST00000197070 2275 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Cux1P53564 Alms1-ps1-201ENSMUST00000159498 2166 ntBASIC18.65■□□□□ 0.58
Cux1P53564 Fam198a-202ENSMUST00000213773 2088 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cux1P53564 2900041M22Rik-201ENSMUST00000155384 1784 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Cux1P53564 Ifna2-201ENSMUST00000105147 1032 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Cux1P53564 Gm15610-201ENSMUST00000120584 195 ntBASIC18.65■□□□□ 0.58
Cux1P53564 Gm14236-201ENSMUST00000142374 872 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Cux1P53564 Itpr3os-201ENSMUST00000143605 794 ntTSL 2 BASIC18.65■□□□□ 0.58
Cux1P53564 Nlrp5-ps-202ENSMUST00000173220 1294 ntBASIC18.65■□□□□ 0.58
Cux1P53564 Gm29560-201ENSMUST00000191526 881 ntTSL 5 BASIC18.65■□□□□ 0.58
Cux1P53564 D8Ertd738e-201ENSMUST00000019506 616 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
Cux1P53564 AC124433.1-201ENSMUST00000224483 1063 ntBASIC18.65■□□□□ 0.58
Cux1P53564 Ly6i-201ENSMUST00000023250 1156 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cux1P53564 H1foo-201ENSMUST00000037831 1113 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cux1P53564 Gm9873-201ENSMUST00000063891 1097 ntBASIC18.65■□□□□ 0.58
Cux1P53564 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cux1P53564 1600014C10Rik-205ENSMUST00000178876 3283 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Cux1P53564 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cux1P53564 Gm12198-201ENSMUST00000154068 1809 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Cux1P53564 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Cux1P53564 Catsper3-201ENSMUST00000021961 1330 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cux1P53564 Gm15477-201ENSMUST00000140578 2130 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Cux1P53564 Chst4-201ENSMUST00000109222 1942 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cux1P53564 Nol10-201ENSMUST00000046011 3021 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cux1P53564 Psmc3-201ENSMUST00000002171 1819 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
Cux1P53564 Ssr1-203ENSMUST00000225246 1825 ntBASIC18.64■□□□□ 0.58
Cux1P53564 Glud1-201ENSMUST00000022322 3390 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Cux1P53564 Gm10479-201ENSMUST00000101568 318 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
Cux1P53564 Gm14942-201ENSMUST00000119642 336 ntBASIC18.64■□□□□ 0.58
Cux1P53564 Gm7150-201ENSMUST00000122032 981 ntBASIC18.64■□□□□ 0.58
Cux1P53564 1810020O05Rik-201ENSMUST00000162547 1047 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
Cux1P53564 Gm28913-201ENSMUST00000186240 364 ntTSL 3 BASIC18.64■□□□□ 0.58
Cux1P53564 Gm19166-201ENSMUST00000196041 1063 ntBASIC18.64■□□□□ 0.58
Cux1P53564 Gm2553-201ENSMUST00000215986 605 ntBASIC18.64■□□□□ 0.58
Cux1P53564 Gm9661-201ENSMUST00000221611 1122 ntBASIC18.64■□□□□ 0.58
Cux1P53564 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Cux1P53564 Morf4l2-202ENSMUST00000080411 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Cux1P53564 Calu-202ENSMUST00000090481 2670 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Cux1P53564 Rad23b-201ENSMUST00000030134 3810 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Cux1P53564 Gm7114-201ENSMUST00000190159 1789 ntBASIC18.64■□□□□ 0.57
Cux1P53564 Tmem63b-201ENSMUST00000113523 3284 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Cux1P53564 Mpp3-204ENSMUST00000107168 3094 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Cux1P53564 Slitrk3-201ENSMUST00000059407 3587 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Cux1P53564 4933440M02Rik-202ENSMUST00000205794 1601 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Cux1P53564 Grin1-204ENSMUST00000114310 4276 ntTSL 5 BASIC18.64■□□□□ 0.57
Cux1P53564 Tnnt3-209ENSMUST00000105947 780 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
Cux1P53564 Yipf6-202ENSMUST00000113811 930 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Cux1P53564 Gm11783-201ENSMUST00000119549 885 ntBASIC18.64■□□□□ 0.57
Cux1P53564 A430105J06Rik-201ENSMUST00000180869 1275 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Cux1P53564 Gm28324-201ENSMUST00000187913 264 ntBASIC18.64■□□□□ 0.57
Cux1P53564 Il20ra-201ENSMUST00000020185 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Cux1P53564 Gm21221-201ENSMUST00000202876 1073 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Cux1P53564 Hils1-201ENSMUST00000038928 864 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Cux1P53564 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC18.63■□□□□ 0.57
Cux1P53564 Evx1os-201ENSMUST00000125305 2916 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Cux1P53564 Rnf123-214ENSMUST00000162355 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cux1P53564 Prex1-203ENSMUST00000109246 2386 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Cux1P53564 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cux1P53564 Tcf4-252ENSMUST00000202477 1873 ntTSL 5 BASIC18.63■□□□□ 0.57
Cux1P53564 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cux1P53564 Slc45a1-201ENSMUST00000037827 3387 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cux1P53564 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cux1P53564 Taf6-202ENSMUST00000110936 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cux1P53564 Tas1r1-201ENSMUST00000030792 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cux1P53564 Rnh1-202ENSMUST00000167493 1656 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cux1P53564 Raver1-202ENSMUST00000217282 4234 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
Cux1P53564 Tcea3-201ENSMUST00000102533 1251 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cux1P53564 Gm25880-201ENSMUST00000104331 132 ntBASIC18.63■□□□□ 0.57
Cux1P53564 Gm26013-201ENSMUST00000104404 119 ntBASIC18.63■□□□□ 0.57
Cux1P53564 Olfr1258-202ENSMUST00000111516 936 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Cux1P53564 Gm11340-201ENSMUST00000119226 412 ntBASIC18.63■□□□□ 0.57
Cux1P53564 D3Ertd751e-215ENSMUST00000195882 680 ntAPPRIS P3 TSL 2 BASIC18.63■□□□□ 0.57
Cux1P53564 Gm11149-203ENSMUST00000215465 805 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Cux1P53564 Eny2-204ENSMUST00000226827 558 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Cux1P53564 Rps18-ps3-201ENSMUST00000080443 456 ntBASIC18.63■□□□□ 0.57
Cux1P53564 Ifitm2-201ENSMUST00000081649 655 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cux1P53564 Olfr1047-201ENSMUST00000099901 960 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Cux1P53564 Gm5780-201ENSMUST00000217774 1834 ntBASIC18.63■□□□□ 0.57
Cux1P53564 Tmprss9-201ENSMUST00000105333 3497 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cux1P53564 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cux1P53564 Sp6-202ENSMUST00000107622 3621 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cux1P53564 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Cux1P53564 Zbtb20-205ENSMUST00000114695 2977 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cux1P53564 Sufu-204ENSMUST00000120778 1850 ntTSL 2 BASIC18.62■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 50.3 ms