Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 AC241621.2-201ENSMUST00000223991 2151 ntBASIC11.89□□□□□ -0.51
Msx1P13297 Cacna1c-227ENSMUST00000220022 7765 ntTSL 5 BASIC11.89□□□□□ -0.51
Msx1P13297 Tctn2-207ENSMUST00000185820 2733 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Msx1P13297 F3-201ENSMUST00000029771 1872 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Msx1P13297 Sox17-206ENSMUST00000192650 3242 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Msx1P13297 Mark2-215ENSMUST00000168872 2124 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
Msx1P13297 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Msx1P13297 Aco1-201ENSMUST00000102973 3832 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Msx1P13297 Mir669o-201ENSMUST00000103898 96 ntBASIC11.89□□□□□ -0.51
Msx1P13297 Spsb1-202ENSMUST00000105684 1002 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Msx1P13297 Klrc1-203ENSMUST00000118447 684 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
Msx1P13297 Gm14152-201ENSMUST00000127020 1073 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Msx1P13297 Mettl5os-201ENSMUST00000129114 667 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Msx1P13297 Eif4e1b-204ENSMUST00000132005 706 ntTSL 2 BASIC11.89□□□□□ -0.51
Msx1P13297 Gm3099-202ENSMUST00000178274 618 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
Msx1P13297 Gm17586-201ENSMUST00000181502 908 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Msx1P13297 Gm29237-201ENSMUST00000186216 448 ntTSL 5 BASIC11.89□□□□□ -0.51
Msx1P13297 1700065D16Rik-203ENSMUST00000189279 393 ntTSL 2 BASIC11.89□□□□□ -0.51
Msx1P13297 Gm33175-201ENSMUST00000211562 461 ntTSL 5 BASIC11.89□□□□□ -0.51
Msx1P13297 Gm45425-201ENSMUST00000211727 618 ntTSL 2 BASIC11.89□□□□□ -0.51
Msx1P13297 Gm8959-201ENSMUST00000213150 571 ntBASIC11.89□□□□□ -0.51
Msx1P13297 CT010465.1-201ENSMUST00000222463 809 ntTSL 5 BASIC11.89□□□□□ -0.51
Msx1P13297 Tnfsf9-201ENSMUST00000039490 1230 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Msx1P13297 Cryga-201ENSMUST00000061497 625 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Msx1P13297 Gm6578-201ENSMUST00000080891 984 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Msx1P13297 Tprkb-202ENSMUST00000089570 1216 ntTSL 5 BASIC11.89□□□□□ -0.51
Msx1P13297 4930423D22Rik-201ENSMUST00000221909 1674 ntBASIC11.89□□□□□ -0.51
Msx1P13297 Capn9-201ENSMUST00000093033 2330 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Msx1P13297 Esrrb-203ENSMUST00000110204 4196 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Msx1P13297 Abhd1-202ENSMUST00000201125 1352 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Msx1P13297 Dag1-204ENSMUST00000191899 5662 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Msx1P13297 Kcnk2-202ENSMUST00000110920 3572 ntAPPRIS ALT1 TSL 5 BASIC11.89□□□□□ -0.51
Msx1P13297 Flcn-202ENSMUST00000091246 2768 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Msx1P13297 Ccdc126-202ENSMUST00000114491 2372 ntTSL 5 BASIC11.89□□□□□ -0.51
Msx1P13297 CT009713.10-201ENSMUST00000225013 1986 ntBASIC11.88□□□□□ -0.51
Msx1P13297 Orc3-201ENSMUST00000048706 2300 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
Msx1P13297 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
Msx1P13297 Insrr-202ENSMUST00000107582 4694 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
Msx1P13297 Fnip2-203ENSMUST00000133154 7299 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
Msx1P13297 Tsku-206ENSMUST00000179780 2404 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Msx1P13297 Acer1-201ENSMUST00000056113 2429 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Msx1P13297 Cutal-201ENSMUST00000028228 2179 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Msx1P13297 Pex19-201ENSMUST00000075895 1917 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Msx1P13297 4931440F15Rik-201ENSMUST00000104962 3274 ntAPPRIS P1 BASIC11.88□□□□□ -0.51
Msx1P13297 Rbpj-207ENSMUST00000201883 4961 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Msx1P13297 Crhr2-208ENSMUST00000212633 2041 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Msx1P13297 Zfp954-201ENSMUST00000056246 2042 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Msx1P13297 A530046M15Rik-201ENSMUST00000221778 1538 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Msx1P13297 6430550D23Rik-201ENSMUST00000086145 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Msx1P13297 Plekha2-204ENSMUST00000128715 3463 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Msx1P13297 Tpm1-210ENSMUST00000113693 1054 ntTSL 5 BASIC11.88□□□□□ -0.51
Msx1P13297 Gm13665-201ENSMUST00000120830 528 ntBASIC11.88□□□□□ -0.51
Msx1P13297 Has2os-201ENSMUST00000125401 485 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Msx1P13297 1700084C06Rik-201ENSMUST00000135674 750 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Msx1P13297 Egfl7-209ENSMUST00000150404 892 ntAPPRIS P4 TSL 5 BASIC11.88□□□□□ -0.51
Msx1P13297 Gm25653-201ENSMUST00000158473 138 ntBASIC11.88□□□□□ -0.51
Msx1P13297 Gm5523-201ENSMUST00000180415 997 ntBASIC11.88□□□□□ -0.51
Msx1P13297 Gm26973-201ENSMUST00000182105 696 ntTSL 3 BASIC11.88□□□□□ -0.51
Msx1P13297 Mocs2-215ENSMUST00000184335 646 ntTSL 5 BASIC11.88□□□□□ -0.51
Msx1P13297 Gm28258-201ENSMUST00000189033 587 ntTSL 3 BASIC11.88□□□□□ -0.51
Msx1P13297 Gm28455-201ENSMUST00000189105 1290 ntBASIC11.88□□□□□ -0.51
Msx1P13297 Gm29264-201ENSMUST00000191240 1264 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Msx1P13297 Gm37576-201ENSMUST00000194228 372 ntBASIC11.88□□□□□ -0.51
Msx1P13297 AC110091.3-202ENSMUST00000217104 791 ntTSL 5 BASIC11.88□□□□□ -0.51
Msx1P13297 Zkscan3-207ENSMUST00000223831 2101 ntBASIC11.88□□□□□ -0.51
Msx1P13297 AC069562.3-201ENSMUST00000225387 587 ntBASIC11.88□□□□□ -0.51
Msx1P13297 Terb2-201ENSMUST00000028661 2115 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Msx1P13297 4930447F04Rik-201ENSMUST00000033525 703 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Msx1P13297 Olfr1153-201ENSMUST00000052300 957 ntBASIC11.88□□□□□ -0.51
Msx1P13297 Defb12-201ENSMUST00000062113 1003 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Msx1P13297 Olfr1106-201ENSMUST00000099867 939 ntAPPRIS P1 BASIC11.88□□□□□ -0.51
Msx1P13297 Gdap1l1-202ENSMUST00000109420 2475 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Msx1P13297 Gm28323-201ENSMUST00000186817 2499 ntBASIC11.88□□□□□ -0.51
Msx1P13297 Adtrp-202ENSMUST00000121404 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Msx1P13297 Hoxb13-201ENSMUST00000062709 2206 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Msx1P13297 Esr2-201ENSMUST00000076634 3288 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Msx1P13297 Nmral1-202ENSMUST00000079130 1459 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Msx1P13297 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Msx1P13297 1110002L01Rik-202ENSMUST00000168012 3569 ntTSL 2 BASIC11.88□□□□□ -0.51
Msx1P13297 Nisch-213ENSMUST00000168206 4990 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Msx1P13297 A530020G20Rik-202ENSMUST00000181070 3660 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Msx1P13297 Bcl7a-201ENSMUST00000031391 4718 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Msx1P13297 Cd27-201ENSMUST00000032486 1559 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Msx1P13297 Cdc25c-201ENSMUST00000060710 1941 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Msx1P13297 Sema6d-206ENSMUST00000103239 6225 ntAPPRIS P4 TSL 5 BASIC11.88□□□□□ -0.51
Msx1P13297 Uchl1os-201ENSMUST00000152002 1685 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Msx1P13297 Mirg-202ENSMUST00000181543 1300 ntTSL 5 BASIC11.87□□□□□ -0.51
Msx1P13297 Fam222b-201ENSMUST00000073705 3258 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Msx1P13297 Aqr-201ENSMUST00000043160 4888 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
Msx1P13297 Gm5846-201ENSMUST00000193146 1414 ntBASIC11.87□□□□□ -0.51
Msx1P13297 4933431M02Rik-201ENSMUST00000203905 1432 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Msx1P13297 Cd74-202ENSMUST00000097563 1410 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Msx1P13297 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
Msx1P13297 Txndc2-201ENSMUST00000050236 1899 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Msx1P13297 Cadm2-202ENSMUST00000120594 3248 ntAPPRIS ALT1 TSL 5 BASIC11.87□□□□□ -0.51
Msx1P13297 Hsph1-201ENSMUST00000074846 3240 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Msx1P13297 Lexm-204ENSMUST00000189032 1549 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Msx1P13297 Rab10os-202ENSMUST00000177896 2872 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Msx1P13297 Abhd14b-209ENSMUST00000216130 1624 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
Msx1P13297 Slc23a4-201ENSMUST00000044387 2175 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms