Protein–RNA interactions for Protein: O88544

Cops4, COP9 signalosome complex subunit 4, mousemouse

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cops4O88544 Gm6460-202ENSMUST00000163787 821 ntAPPRIS P2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cops4O88544 Gm8879-201ENSMUST00000170260 1125 ntAPPRIS P1 TSL 5 BASIC11.38□□□□□ -0.59
Cops4O88544 4933402N22Rik-202ENSMUST00000170301 1092 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cops4O88544 Gm17634-201ENSMUST00000181383 1285 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Cops4O88544 Lsmem2-201ENSMUST00000191791 369 ntTSL 3 BASIC11.38□□□□□ -0.59
Cops4O88544 Gm34086-201ENSMUST00000196486 743 ntTSL 3 BASIC11.38□□□□□ -0.59
Cops4O88544 Gm44064-201ENSMUST00000204964 1087 ntBASIC11.38□□□□□ -0.59
Cops4O88544 Gm42303-201ENSMUST00000209960 1170 ntTSL 5 BASIC11.38□□□□□ -0.59
Cops4O88544 Gm33460-201ENSMUST00000212286 536 ntTSL 5 BASIC11.38□□□□□ -0.59
Cops4O88544 AC155252.1-201ENSMUST00000226462 1208 ntBASIC11.38□□□□□ -0.59
Cops4O88544 CT025535.1-201ENSMUST00000227172 491 ntBASIC11.38□□□□□ -0.59
Cops4O88544 Nudt22-201ENSMUST00000041686 1000 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cops4O88544 Rpl36-201ENSMUST00000080492 404 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cops4O88544 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cops4O88544 Gm44260-201ENSMUST00000204946 2094 ntBASIC11.38□□□□□ -0.59
Cops4O88544 Gnb1l-202ENSMUST00000090086 3549 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cops4O88544 Tut1-201ENSMUST00000096239 2747 ntAPPRIS P1 TSL 2 BASIC11.38□□□□□ -0.59
Cops4O88544 Abca7-201ENSMUST00000043866 6590 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cops4O88544 Lsp1-211ENSMUST00000149521 1910 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Cops4O88544 Lrrc18-204ENSMUST00000120951 1511 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
Cops4O88544 Plaur-201ENSMUST00000002284 1506 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cops4O88544 Gm2128-201ENSMUST00000108009 2560 ntBASIC11.38□□□□□ -0.59
Cops4O88544 Sema3g-201ENSMUST00000090180 4540 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cops4O88544 Mrpl45-201ENSMUST00000019026 2431 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cops4O88544 Gm28590-201ENSMUST00000185679 1609 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Cops4O88544 Smc3-201ENSMUST00000025930 4851 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cops4O88544 Bcas3-202ENSMUST00000092821 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cops4O88544 Mbtd1-201ENSMUST00000063645 2138 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Cops4O88544 Nfatc4-202ENSMUST00000172271 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cops4O88544 0610040F04Rik-201ENSMUST00000137478 1734 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Cops4O88544 Pcif1-201ENSMUST00000041643 5772 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cops4O88544 Duoxa2-201ENSMUST00000028656 1592 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cops4O88544 Slc25a22-223ENSMUST00000201710 2565 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.59
Cops4O88544 Rnf165-202ENSMUST00000182024 4309 ntTSL 5 BASIC11.37□□□□□ -0.59
Cops4O88544 Zfp597-201ENSMUST00000090522 5668 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cops4O88544 Wnt5a-201ENSMUST00000063465 7010 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cops4O88544 Zfp654-202ENSMUST00000207826 6261 ntAPPRIS ALT2 TSL 5 BASIC11.37□□□□□ -0.59
Cops4O88544 Krt33a-201ENSMUST00000018399 1683 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cops4O88544 Dach2-201ENSMUST00000067219 2520 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cops4O88544 Bbs1-201ENSMUST00000053506 5581 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cops4O88544 Txndc5-204ENSMUST00000162075 2619 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Cops4O88544 Gm15755-201ENSMUST00000133698 659 ntTSL 3 BASIC11.37□□□□□ -0.59
Cops4O88544 Gm12091-201ENSMUST00000146791 830 ntBASIC11.37□□□□□ -0.59
Cops4O88544 BC046401-201ENSMUST00000155786 847 ntTSL 3 BASIC11.37□□□□□ -0.59
Cops4O88544 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC11.37□□□□□ -0.59
Cops4O88544 1700072B07Rik-201ENSMUST00000191141 445 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Cops4O88544 1600017P15Rik-202ENSMUST00000193960 890 ntBASIC11.37□□□□□ -0.59
Cops4O88544 Gm18018-201ENSMUST00000198273 408 ntBASIC11.37□□□□□ -0.59
Cops4O88544 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cops4O88544 Il13-201ENSMUST00000020650 1205 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cops4O88544 Bpnt1-205ENSMUST00000210277 1226 ntTSL 5 BASIC11.37□□□□□ -0.59
Cops4O88544 Sct-204ENSMUST00000211667 506 ntAPPRIS ALT2 TSL 2 BASIC11.37□□□□□ -0.59
Cops4O88544 Gstt2-203ENSMUST00000218500 794 ntTSL 5 BASIC11.37□□□□□ -0.59
Cops4O88544 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC11.37□□□□□ -0.59
Cops4O88544 Txn1-201ENSMUST00000030051 1051 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cops4O88544 Swi5-201ENSMUST00000050410 775 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cops4O88544 Esrp1-204ENSMUST00000108313 3696 ntTSL 5 BASIC11.37□□□□□ -0.59
Cops4O88544 Gpc5-203ENSMUST00000176912 2837 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Cops4O88544 Reps1-201ENSMUST00000126390 2595 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cops4O88544 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC11.37□□□□□ -0.59
Cops4O88544 Creld2-201ENSMUST00000024042 1364 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cops4O88544 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cops4O88544 Limk2-201ENSMUST00000101638 3514 ntAPPRIS P4 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cops4O88544 Prkag3-201ENSMUST00000081636 2341 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cops4O88544 Tax1bp1-201ENSMUST00000080723 3285 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cops4O88544 Lgr5-206ENSMUST00000172806 2652 ntTSL 5 BASIC11.37□□□□□ -0.59
Cops4O88544 Phf24-202ENSMUST00000107975 6494 ntAPPRIS P1 TSL 2 BASIC11.37□□□□□ -0.59
Cops4O88544 Ccdc89-201ENSMUST00000061391 2093 ntAPPRIS P1 BASIC11.37□□□□□ -0.59
Cops4O88544 4732414G09Rik-201ENSMUST00000156243 2422 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Cops4O88544 4732471J01Rik-204ENSMUST00000206436 2430 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Cops4O88544 Immt-203ENSMUST00000114151 2518 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cops4O88544 4933434E20Rik-206ENSMUST00000160640 2510 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cops4O88544 Syt7-202ENSMUST00000076968 6624 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Cops4O88544 Fn1-214ENSMUST00000188894 8043 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cops4O88544 Ttc23-202ENSMUST00000107470 1915 ntAPPRIS ALT2 TSL 5 BASIC11.37□□□□□ -0.59
Cops4O88544 Hps1-209ENSMUST00000162061 2608 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cops4O88544 Med12l-201ENSMUST00000029393 2295 ntTSL 5 BASIC11.37□□□□□ -0.59
Cops4O88544 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cops4O88544 Fosb-201ENSMUST00000003640 3782 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cops4O88544 Mirg-202ENSMUST00000181543 1300 ntTSL 5 BASIC11.36□□□□□ -0.59
Cops4O88544 Cald1-205ENSMUST00000115027 4777 ntTSL 5 BASIC11.36□□□□□ -0.59
Cops4O88544 Zfp536-202ENSMUST00000175941 4423 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Cops4O88544 Gm43172-201ENSMUST00000202139 2137 ntBASIC11.36□□□□□ -0.59
Cops4O88544 Susd5-201ENSMUST00000135338 4083 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Cops4O88544 Mmel1-204ENSMUST00000105635 2592 ntAPPRIS ALT2 TSL 5 BASIC11.36□□□□□ -0.59
Cops4O88544 Fhl2-202ENSMUST00000185893 1421 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Cops4O88544 Retreg1-206ENSMUST00000228306 1430 ntBASIC11.36□□□□□ -0.59
Cops4O88544 Ip6k3-201ENSMUST00000025046 2307 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Cops4O88544 Gm21964-203ENSMUST00000219454 1513 ntAPPRIS P5 TSL 5 BASIC11.36□□□□□ -0.59
Cops4O88544 Acy1-201ENSMUST00000024031 1529 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Cops4O88544 Maml3-201ENSMUST00000118075 5450 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Cops4O88544 Etfrf1-205ENSMUST00000111724 1618 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Cops4O88544 Foxk1-201ENSMUST00000072837 7439 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Cops4O88544 Hmox2-201ENSMUST00000004172 1730 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Cops4O88544 Cux1-204ENSMUST00000175975 10945 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Cops4O88544 Eogt-202ENSMUST00000113387 701 ntAPPRIS ALT2 TSL 5 BASIC11.36□□□□□ -0.59
Cops4O88544 Rhox2f-201ENSMUST00000115173 799 ntAPPRIS P1 TSL 5 BASIC11.36□□□□□ -0.59
Cops4O88544 Tpd52-206ENSMUST00000121038 849 ntTSL 5 BASIC11.36□□□□□ -0.59
Cops4O88544 Ndufa2-201ENSMUST00000014438 572 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Cops4O88544 Pmepa1os-201ENSMUST00000150185 680 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Retrieved 100 of 76,532 protein–RNA pairs in 33.8 ms