Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gm14025-201ENSMUST00000145798 4242 ntAPPRIS P1 TSL 5 BASIC10.19□□□□□ -0.78
Hmgb3O54879 Tmeff2-202ENSMUST00000114565 2718 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
Hmgb3O54879 Hdac7-205ENSMUST00000118294 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC10.19□□□□□ -0.78
Hmgb3O54879 Pex26-201ENSMUST00000088561 4093 ntAPPRIS P3 TSL 1 (best) BASIC10.19□□□□□ -0.78
Hmgb3O54879 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Hmgb3O54879 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Hmgb3O54879 Nrg1-206ENSMUST00000208205 2645 ntAPPRIS ALT2 TSL 5 BASIC10.19□□□□□ -0.78
Hmgb3O54879 Cacna1c-214ENSMUST00000188106 6462 ntAPPRIS ALT2 TSL 1 (best) BASIC10.19□□□□□ -0.78
Hmgb3O54879 Ctnnbip1-202ENSMUST00000105692 634 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Hmgb3O54879 Evx1-202ENSMUST00000129243 1034 ntTSL 3 BASIC10.19□□□□□ -0.78
Hmgb3O54879 C430049B03Rik-201ENSMUST00000129764 868 ntTSL 3 BASIC10.19□□□□□ -0.78
Hmgb3O54879 1700029H14Rik-204ENSMUST00000151400 1216 ntAPPRIS ALT2 TSL 5 BASIC10.19□□□□□ -0.78
Hmgb3O54879 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Hmgb3O54879 Gm22175-201ENSMUST00000175007 78 ntBASIC10.19□□□□□ -0.78
Hmgb3O54879 Fcrl1-204ENSMUST00000191666 925 ntAPPRIS ALT2 TSL 1 (best) BASIC10.19□□□□□ -0.78
Hmgb3O54879 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Hmgb3O54879 Calml4-201ENSMUST00000034777 864 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Hmgb3O54879 Atxn1l-202ENSMUST00000212605 7439 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Hmgb3O54879 Slc24a4-201ENSMUST00000079020 2337 ntAPPRIS P2 TSL 1 (best) BASIC10.19□□□□□ -0.78
Hmgb3O54879 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
Hmgb3O54879 Lrrc27-201ENSMUST00000016124 2113 ntAPPRIS P3 TSL 1 (best) BASIC10.19□□□□□ -0.78
Hmgb3O54879 Lta4h-201ENSMUST00000016033 2029 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Hmgb3O54879 1700082M22Rik-201ENSMUST00000067136 2022 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
Hmgb3O54879 Prkcsh-202ENSMUST00000115331 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC10.19□□□□□ -0.78
Hmgb3O54879 Gm8206-201ENSMUST00000164139 1956 ntTSL 5 BASIC10.19□□□□□ -0.78
Hmgb3O54879 AC160410.1-201ENSMUST00000219298 1972 ntBASIC10.19□□□□□ -0.78
Hmgb3O54879 Eif1a-201ENSMUST00000078079 2879 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Hmgb3O54879 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Hmgb3O54879 Mmel1-204ENSMUST00000105635 2592 ntAPPRIS ALT2 TSL 5 BASIC10.19□□□□□ -0.78
Hmgb3O54879 Elmod3-204ENSMUST00000141833 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC10.18□□□□□ -0.78
Hmgb3O54879 Usp16-201ENSMUST00000026710 3205 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Hmgb3O54879 Ldha-202ENSMUST00000048209 1588 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Hmgb3O54879 Kifc2-201ENSMUST00000004294 3143 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Hmgb3O54879 Plekha7-202ENSMUST00000181981 4633 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Hmgb3O54879 A830082K12Rik-201ENSMUST00000123998 2203 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Hmgb3O54879 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC10.18□□□□□ -0.78
Hmgb3O54879 Actc1-201ENSMUST00000090269 1473 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Hmgb3O54879 Zdhhc20-205ENSMUST00000226057 2179 ntAPPRIS ALT2 BASIC10.18□□□□□ -0.78
Hmgb3O54879 Mapk4-202ENSMUST00000159162 3514 ntTSL 5 BASIC10.18□□□□□ -0.78
Hmgb3O54879 4931428F04Rik-201ENSMUST00000014981 3492 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Hmgb3O54879 E130308A19Rik-202ENSMUST00000070150 10856 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Hmgb3O54879 Armcx3-202ENSMUST00000086880 2024 ntAPPRIS P1 TSL 2 BASIC10.18□□□□□ -0.78
Hmgb3O54879 Cc2d1a-202ENSMUST00000117424 3262 ntAPPRIS ALT2 TSL 5 BASIC10.18□□□□□ -0.78
Hmgb3O54879 Zbtb21-202ENSMUST00000063605 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC10.18□□□□□ -0.78
Hmgb3O54879 AC165260.6-205ENSMUST00000224190 9762 ntBASIC10.18□□□□□ -0.78
Hmgb3O54879 Maml2-202ENSMUST00000159294 6404 ntAPPRIS P1 TSL 5 BASIC10.18□□□□□ -0.78
Hmgb3O54879 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC10.18□□□□□ -0.78
Hmgb3O54879 Rpl17-ps5-201ENSMUST00000121001 555 ntBASIC10.18□□□□□ -0.78
Hmgb3O54879 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Hmgb3O54879 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Hmgb3O54879 Zfp715-201ENSMUST00000012796 907 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Hmgb3O54879 Gm9630-201ENSMUST00000178304 885 ntBASIC10.18□□□□□ -0.78
Hmgb3O54879 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC10.18□□□□□ -0.78
Hmgb3O54879 Gm43714-201ENSMUST00000198351 1204 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Hmgb3O54879 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC10.18□□□□□ -0.78
Hmgb3O54879 Gm35368-201ENSMUST00000209554 1244 ntTSL 5 BASIC10.18□□□□□ -0.78
Hmgb3O54879 AC135669.1-202ENSMUST00000216742 540 ntBASIC10.18□□□□□ -0.78
Hmgb3O54879 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC10.18□□□□□ -0.78
Hmgb3O54879 Gm9063-201ENSMUST00000223299 582 ntBASIC10.18□□□□□ -0.78
Hmgb3O54879 Hcfc1r1-201ENSMUST00000024697 946 ntAPPRIS P2 TSL 1 (best) BASIC10.18□□□□□ -0.78
Hmgb3O54879 Txndc2-201ENSMUST00000050236 1899 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Hmgb3O54879 Mmgt2-203ENSMUST00000129162 1828 ntAPPRIS P1 TSL 5 BASIC10.18□□□□□ -0.78
Hmgb3O54879 Cldn12-201ENSMUST00000060947 3597 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Hmgb3O54879 Gabrg3-201ENSMUST00000068394 1724 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Hmgb3O54879 Anapc4-201ENSMUST00000031072 3854 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Hmgb3O54879 Ppp3cb-202ENSMUST00000159027 3831 ntAPPRIS P3 TSL 1 (best) BASIC10.18□□□□□ -0.78
Hmgb3O54879 Rnps1-202ENSMUST00000115371 1617 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Hmgb3O54879 Psd2-203ENSMUST00000175734 4300 ntAPPRIS ALT2 TSL 1 (best) BASIC10.18□□□□□ -0.78
Hmgb3O54879 Olfr1428-203ENSMUST00000214103 2127 ntAPPRIS P1 TSL 5 BASIC10.18□□□□□ -0.78
Hmgb3O54879 Umod-201ENSMUST00000033263 2625 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Hmgb3O54879 Muc6-201ENSMUST00000062451 8650 ntAPPRIS ALT2 TSL 5 BASIC10.18□□□□□ -0.78
Hmgb3O54879 Capn15-204ENSMUST00000212149 4555 ntAPPRIS P3 TSL 5 BASIC10.17□□□□□ -0.78
Hmgb3O54879 Hmgcs2-202ENSMUST00000120541 2524 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Hmgb3O54879 Arhgap24-206ENSMUST00000112854 2991 ntTSL 5 BASIC10.17□□□□□ -0.78
Hmgb3O54879 Gm45053-201ENSMUST00000206112 2499 ntBASIC10.17□□□□□ -0.78
Hmgb3O54879 Plxdc2-201ENSMUST00000028081 6947 ntAPPRIS P2 TSL 1 (best) BASIC10.17□□□□□ -0.78
Hmgb3O54879 Mylip-202ENSMUST00000222178 1954 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Hmgb3O54879 A930038B10Rik-202ENSMUST00000181044 3415 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Hmgb3O54879 Ubr1-201ENSMUST00000028728 7768 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Hmgb3O54879 Atad5-201ENSMUST00000017694 7272 ntAPPRIS P2 TSL 1 (best) BASIC10.17□□□□□ -0.78
Hmgb3O54879 Mbtps2-203ENSMUST00000112522 3891 ntTSL 2 BASIC10.17□□□□□ -0.78
Hmgb3O54879 Mbtps2-208ENSMUST00000179062 3890 ntAPPRIS P1 TSL 2 BASIC10.17□□□□□ -0.78
Hmgb3O54879 Fam172a-201ENSMUST00000091459 3892 ntAPPRIS ALT2 TSL 1 (best) BASIC10.17□□□□□ -0.78
Hmgb3O54879 Slc7a4-202ENSMUST00000090165 1907 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Hmgb3O54879 Rab14-202ENSMUST00000113025 4346 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Hmgb3O54879 Cplx3-201ENSMUST00000045068 2859 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Hmgb3O54879 Sec61g-203ENSMUST00000109643 1862 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Hmgb3O54879 Cacna1f-201ENSMUST00000115725 6028 ntAPPRIS ALT2 TSL 5 BASIC10.17□□□□□ -0.78
Hmgb3O54879 Sipa1l1-210ENSMUST00000222714 6002 ntAPPRIS P3 TSL 1 (best) BASIC10.17□□□□□ -0.78
Hmgb3O54879 Rgs6-204ENSMUST00000185674 1362 ntTSL 5 BASIC10.17□□□□□ -0.78
Hmgb3O54879 Gm9755-201ENSMUST00000032981 1356 ntBASIC10.17□□□□□ -0.78
Hmgb3O54879 Tmem47-201ENSMUST00000026760 4007 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Hmgb3O54879 Gm20696-201ENSMUST00000155466 3560 ntAPPRIS P1 TSL 2 BASIC10.17□□□□□ -0.78
Hmgb3O54879 Gdf9-201ENSMUST00000018382 1793 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Hmgb3O54879 Mdm1-208ENSMUST00000219087 1318 ntTSL 2 BASIC10.17□□□□□ -0.78
Hmgb3O54879 Acsm4-201ENSMUST00000047045 2152 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Hmgb3O54879 Cbfa2t2-204ENSMUST00000109725 6080 ntAPPRIS ALT1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Hmgb3O54879 Cbfa2t2-201ENSMUST00000045270 6069 ntAPPRIS P3 TSL 1 (best) BASIC10.17□□□□□ -0.78
Hmgb3O54879 Dclk1-203ENSMUST00000167204 6025 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Hmgb3O54879 Il22ra1-201ENSMUST00000102546 2569 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Retrieved 100 of 76,532 protein–RNA pairs in 125.9 ms