Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Pex2-206ENSMUST00000195855 1587 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trim3Q9R1R2 Mast1-202ENSMUST00000119820 2078 ntTSL 5 BASIC11.66□□□□□ -0.54
Trim3Q9R1R2 Ptprt-203ENSMUST00000109443 12112 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trim3Q9R1R2 Mrvi1-202ENSMUST00000125758 5953 ntAPPRIS ALT2 TSL 2 BASIC11.66□□□□□ -0.54
Trim3Q9R1R2 Tspan32-202ENSMUST00000075172 1876 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trim3Q9R1R2 Rasgrp4-214ENSMUST00000205027 2717 ntTSL 5 BASIC11.66□□□□□ -0.54
Trim3Q9R1R2 Asph-212ENSMUST00000108340 6646 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trim3Q9R1R2 Slc16a12-201ENSMUST00000009522 4051 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trim3Q9R1R2 Odf3-202ENSMUST00000106049 1509 ntTSL 5 BASIC11.65□□□□□ -0.54
Trim3Q9R1R2 Alg14-201ENSMUST00000039442 2037 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trim3Q9R1R2 Lrrfip1-202ENSMUST00000068167 2849 ntAPPRIS ALT2 TSL 5 BASIC11.65□□□□□ -0.54
Trim3Q9R1R2 St6galnac6-202ENSMUST00000081879 2345 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Trim3Q9R1R2 Pbxip1-201ENSMUST00000038942 4479 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trim3Q9R1R2 Gm11661-201ENSMUST00000121761 1327 ntBASIC11.65□□□□□ -0.54
Trim3Q9R1R2 2900069G24Rik-201ENSMUST00000192780 1311 ntBASIC11.65□□□□□ -0.54
Trim3Q9R1R2 Ddx10-201ENSMUST00000065630 3128 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trim3Q9R1R2 Pdlim5-201ENSMUST00000029941 5016 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trim3Q9R1R2 Tal1-203ENSMUST00000161601 3703 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trim3Q9R1R2 Rgs6-222ENSMUST00000202210 3069 ntAPPRIS ALT2 TSL 5 BASIC11.65□□□□□ -0.54
Trim3Q9R1R2 Scn8a-208ENSMUST00000200963 5814 ntTSL 5 BASIC11.65□□□□□ -0.54
Trim3Q9R1R2 Maml3-201ENSMUST00000118075 5450 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Trim3Q9R1R2 Csrnp3-207ENSMUST00000145598 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trim3Q9R1R2 E130114P18Rik-202ENSMUST00000107068 1132 ntAPPRIS P5 TSL 3 BASIC11.65□□□□□ -0.54
Trim3Q9R1R2 Gm15198-201ENSMUST00000117283 177 ntBASIC11.65□□□□□ -0.54
Trim3Q9R1R2 Mrps17-205ENSMUST00000119985 859 ntAPPRIS P1 TSL 2 BASIC11.65□□□□□ -0.54
Trim3Q9R1R2 Gm11658-201ENSMUST00000120913 1008 ntBASIC11.65□□□□□ -0.54
Trim3Q9R1R2 Gm16124-201ENSMUST00000146938 516 ntTSL 2 BASIC11.65□□□□□ -0.54
Trim3Q9R1R2 Gm24548-201ENSMUST00000158650 108 ntBASIC11.65□□□□□ -0.54
Trim3Q9R1R2 U2af1l4-215ENSMUST00000166257 546 ntTSL 5 BASIC11.65□□□□□ -0.54
Trim3Q9R1R2 Gm23363-201ENSMUST00000175024 79 ntBASIC11.65□□□□□ -0.54
Trim3Q9R1R2 Rnf141-207ENSMUST00000176716 1080 ntTSL 2 BASIC11.65□□□□□ -0.54
Trim3Q9R1R2 Gm2467-201ENSMUST00000182266 1010 ntBASIC11.65□□□□□ -0.54
Trim3Q9R1R2 Gm6981-201ENSMUST00000182467 1008 ntBASIC11.65□□□□□ -0.54
Trim3Q9R1R2 1500004A13Rik-208ENSMUST00000184958 823 ntTSL 3 BASIC11.65□□□□□ -0.54
Trim3Q9R1R2 2810039B14Rik-206ENSMUST00000185040 1113 ntBASIC11.65□□□□□ -0.54
Trim3Q9R1R2 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC11.65□□□□□ -0.54
Trim3Q9R1R2 Gm43403-202ENSMUST00000198830 370 ntTSL 3 BASIC11.65□□□□□ -0.54
Trim3Q9R1R2 Plin1-203ENSMUST00000205413 1294 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Trim3Q9R1R2 Gm5781-201ENSMUST00000219792 443 ntBASIC11.65□□□□□ -0.54
Trim3Q9R1R2 AC144543.1-201ENSMUST00000221840 1064 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Trim3Q9R1R2 Olfr1368-201ENSMUST00000055298 1064 ntAPPRIS P1 BASIC11.65□□□□□ -0.54
Trim3Q9R1R2 Slc22a16-201ENSMUST00000019978 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trim3Q9R1R2 Nemp1-203ENSMUST00000118728 2362 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trim3Q9R1R2 Rbak-202ENSMUST00000165318 3480 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trim3Q9R1R2 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC11.65□□□□□ -0.54
Trim3Q9R1R2 Il2rb-201ENSMUST00000089398 2692 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trim3Q9R1R2 Clspn-201ENSMUST00000048391 5027 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trim3Q9R1R2 Dgcr2-203ENSMUST00000117082 2987 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Trim3Q9R1R2 Atp6v1h-201ENSMUST00000044369 2049 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trim3Q9R1R2 Kdm2b-203ENSMUST00000086200 4999 ntAPPRIS ALT2 TSL 5 BASIC11.65□□□□□ -0.54
Trim3Q9R1R2 Wnt3-201ENSMUST00000000127 3076 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trim3Q9R1R2 Map3k11-201ENSMUST00000004156 3801 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Trim3Q9R1R2 Gm18222-201ENSMUST00000202416 1387 ntBASIC11.65□□□□□ -0.55
Trim3Q9R1R2 Rabggtb-201ENSMUST00000089950 1381 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.55
Trim3Q9R1R2 Zfp12-203ENSMUST00000077485 4294 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.55
Trim3Q9R1R2 Myo16-203ENSMUST00000207477 7169 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.55
Trim3Q9R1R2 Cbln3-201ENSMUST00000063871 4866 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
Trim3Q9R1R2 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC11.65□□□□□ -0.55
Trim3Q9R1R2 Zp1-201ENSMUST00000025641 1963 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
Trim3Q9R1R2 Coq3-201ENSMUST00000029909 2651 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trim3Q9R1R2 Olfr283-202ENSMUST00000215830 2392 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
Trim3Q9R1R2 Gpr18-201ENSMUST00000055475 1498 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trim3Q9R1R2 Fyttd1-211ENSMUST00000171325 4295 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Trim3Q9R1R2 Hdac5-201ENSMUST00000008999 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trim3Q9R1R2 Egfl7-201ENSMUST00000100290 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trim3Q9R1R2 Chrnd-201ENSMUST00000073252 2925 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trim3Q9R1R2 Clca2-203ENSMUST00000198993 2774 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trim3Q9R1R2 Adam32-202ENSMUST00000121438 2450 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trim3Q9R1R2 Hnrnph2-205ENSMUST00000113203 2315 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
Trim3Q9R1R2 Sun2-203ENSMUST00000100439 3768 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trim3Q9R1R2 Arsa-202ENSMUST00000165199 3492 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trim3Q9R1R2 Sh3glb2-202ENSMUST00000100215 1749 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Trim3Q9R1R2 Trpc2-201ENSMUST00000124189 2874 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trim3Q9R1R2 Pggt1b-201ENSMUST00000025354 2736 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trim3Q9R1R2 Eogt-201ENSMUST00000054344 4424 ntAPPRIS P2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trim3Q9R1R2 Trpc7-208ENSMUST00000174457 2424 ntTSL 5 BASIC11.64□□□□□ -0.55
Trim3Q9R1R2 Tfdp2-205ENSMUST00000179416 2408 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trim3Q9R1R2 4930581F22Rik-201ENSMUST00000093873 2402 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Trim3Q9R1R2 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
Trim3Q9R1R2 Ndufa2-201ENSMUST00000014438 572 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trim3Q9R1R2 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC11.64□□□□□ -0.55
Trim3Q9R1R2 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC11.64□□□□□ -0.55
Trim3Q9R1R2 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC11.64□□□□□ -0.55
Trim3Q9R1R2 Gm27501-201ENSMUST00000183599 107 ntBASIC11.64□□□□□ -0.55
Trim3Q9R1R2 Gm38158-201ENSMUST00000194617 339 ntBASIC11.64□□□□□ -0.55
Trim3Q9R1R2 Gm44702-201ENSMUST00000209194 592 ntTSL 3 BASIC11.64□□□□□ -0.55
Trim3Q9R1R2 Mt3-203ENSMUST00000211930 477 ntTSL 2 BASIC11.64□□□□□ -0.55
Trim3Q9R1R2 Med27-201ENSMUST00000028139 1254 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trim3Q9R1R2 Cldnd2-201ENSMUST00000040227 664 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trim3Q9R1R2 Scgb3a2-201ENSMUST00000043803 842 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Trim3Q9R1R2 Cyb5d1-201ENSMUST00000051620 753 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trim3Q9R1R2 Tnnt3-201ENSMUST00000074187 1007 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trim3Q9R1R2 Pcdhb16-201ENSMUST00000051442 5225 ntAPPRIS P1 BASIC11.64□□□□□ -0.55
Trim3Q9R1R2 Itgb4-204ENSMUST00000106460 5919 ntAPPRIS ALT2 TSL 5 BASIC11.64□□□□□ -0.55
Trim3Q9R1R2 Ttll12-201ENSMUST00000016901 3220 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trim3Q9R1R2 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC11.64□□□□□ -0.55
Trim3Q9R1R2 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trim3Q9R1R2 Slc37a2-201ENSMUST00000115068 5943 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trim3Q9R1R2 Chst4-201ENSMUST00000109222 1942 ntAPPRIS P2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trim3Q9R1R2 Gm43858-201ENSMUST00000199418 1778 ntBASIC11.64□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 34.8 ms