Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Cdk5rap3-201ENSMUST00000103152 2250 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Prpf40aQ9R1C7 Carmil1-201ENSMUST00000072889 4988 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
Prpf40aQ9R1C7 Dnmt1-203ENSMUST00000178110 5870 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Prpf40aQ9R1C7 Tuba1a-201ENSMUST00000097014 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Prpf40aQ9R1C7 Jarid2-201ENSMUST00000044608 5019 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Prpf40aQ9R1C7 Banp-210ENSMUST00000173254 1521 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Prpf40aQ9R1C7 CT010488.1-201ENSMUST00000214890 1522 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Prpf40aQ9R1C7 4933421I07Rik-201ENSMUST00000032648 1413 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Prpf40aQ9R1C7 Pgghg-204ENSMUST00000164580 3001 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Prpf40aQ9R1C7 Gm2420-201ENSMUST00000119864 2149 ntBASIC13.63□□□□□ -0.23
Prpf40aQ9R1C7 Rab3a-203ENSMUST00000110092 1556 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Prpf40aQ9R1C7 Slc7a4-202ENSMUST00000090165 1907 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Prpf40aQ9R1C7 Zc3h12d-201ENSMUST00000039484 4092 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Prpf40aQ9R1C7 Mapk3-203ENSMUST00000091328 1716 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Prpf40aQ9R1C7 Krit1-201ENSMUST00000080085 2930 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Prpf40aQ9R1C7 Cog6-201ENSMUST00000036665 3182 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Prpf40aQ9R1C7 Sorcs1-201ENSMUST00000072685 4396 ntTSL 5 BASIC13.62□□□□□ -0.23
Prpf40aQ9R1C7 Pnma3-201ENSMUST00000060418 3405 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
Prpf40aQ9R1C7 Accsl-201ENSMUST00000099690 2224 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Prpf40aQ9R1C7 Brinp2-201ENSMUST00000004133 4167 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Prpf40aQ9R1C7 Gm11658-201ENSMUST00000120913 1008 ntBASIC13.62□□□□□ -0.23
Prpf40aQ9R1C7 Ggnbp1-202ENSMUST00000122106 1107 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Prpf40aQ9R1C7 Gm13562-201ENSMUST00000125198 797 ntTSL 2 BASIC13.62□□□□□ -0.23
Prpf40aQ9R1C7 B430010I23Rik-202ENSMUST00000152188 1168 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Prpf40aQ9R1C7 Gm11630-201ENSMUST00000152825 382 ntTSL 2 BASIC13.62□□□□□ -0.23
Prpf40aQ9R1C7 Gm8018-201ENSMUST00000173536 789 ntBASIC13.62□□□□□ -0.23
Prpf40aQ9R1C7 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC13.62□□□□□ -0.23
Prpf40aQ9R1C7 Gm2467-201ENSMUST00000182266 1010 ntBASIC13.62□□□□□ -0.23
Prpf40aQ9R1C7 Gm6981-201ENSMUST00000182467 1008 ntBASIC13.62□□□□□ -0.23
Prpf40aQ9R1C7 Tex9-206ENSMUST00000183574 1264 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Prpf40aQ9R1C7 Gm28085-201ENSMUST00000189281 1137 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Prpf40aQ9R1C7 Ube2f-210ENSMUST00000191368 1110 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Prpf40aQ9R1C7 Gm20083-202ENSMUST00000206663 1008 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Prpf40aQ9R1C7 Stambp-ps1-201ENSMUST00000209280 1208 ntBASIC13.62□□□□□ -0.23
Prpf40aQ9R1C7 Ambp-201ENSMUST00000030041 1268 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Prpf40aQ9R1C7 Saa3-201ENSMUST00000006956 555 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Prpf40aQ9R1C7 Olfr463-201ENSMUST00000081417 936 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
Prpf40aQ9R1C7 Dars2-201ENSMUST00000035430 3619 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Prpf40aQ9R1C7 Slc25a40-201ENSMUST00000066921 2784 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Prpf40aQ9R1C7 Wfs1-201ENSMUST00000043964 3787 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Prpf40aQ9R1C7 4930550C17Rik-201ENSMUST00000181629 1411 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Prpf40aQ9R1C7 Bin2-205ENSMUST00000182814 1901 ntTSL 5 BASIC13.62□□□□□ -0.23
Prpf40aQ9R1C7 Tmem115-201ENSMUST00000010189 2194 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Prpf40aQ9R1C7 Synpo-211ENSMUST00000155195 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Prpf40aQ9R1C7 Gtf2ird1-202ENSMUST00000074114 3330 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Prpf40aQ9R1C7 Tcp10b-202ENSMUST00000116666 2588 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Prpf40aQ9R1C7 Gm10728-201ENSMUST00000194292 1829 ntBASIC13.62□□□□□ -0.23
Prpf40aQ9R1C7 Cd27-201ENSMUST00000032486 1559 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Prpf40aQ9R1C7 Gm26540-201ENSMUST00000181858 1310 ntTSL 5 BASIC13.62□□□□□ -0.23
Prpf40aQ9R1C7 AC110816.2-201ENSMUST00000220360 1323 ntTSL 5 BASIC13.62□□□□□ -0.23
Prpf40aQ9R1C7 Gm3287-205ENSMUST00000228893 1332 ntBASIC13.62□□□□□ -0.23
Prpf40aQ9R1C7 Dab2ip-207ENSMUST00000112992 6184 ntTSL 5 BASIC13.61□□□□□ -0.23
Prpf40aQ9R1C7 Gm13293-201ENSMUST00000131188 1615 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Prpf40aQ9R1C7 Cacna1c-203ENSMUST00000112790 7631 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Prpf40aQ9R1C7 Zcchc18-202ENSMUST00000101227 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Prpf40aQ9R1C7 Tcf4-205ENSMUST00000114980 2192 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
Prpf40aQ9R1C7 Psmd9-201ENSMUST00000100729 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Prpf40aQ9R1C7 Arid3b-209ENSMUST00000171444 4171 ntAPPRIS P2 TSL 5 BASIC13.61□□□□□ -0.23
Prpf40aQ9R1C7 Cdc7-203ENSMUST00000117196 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Prpf40aQ9R1C7 Mat2b-202ENSMUST00000101347 2053 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Prpf40aQ9R1C7 Prr36-201ENSMUST00000168386 4616 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
Prpf40aQ9R1C7 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC13.61□□□□□ -0.23
Prpf40aQ9R1C7 Gm11793-201ENSMUST00000120433 981 ntBASIC13.61□□□□□ -0.23
Prpf40aQ9R1C7 Gm11964-201ENSMUST00000120982 444 ntBASIC13.61□□□□□ -0.23
Prpf40aQ9R1C7 Gm13394-201ENSMUST00000121658 1000 ntBASIC13.61□□□□□ -0.23
Prpf40aQ9R1C7 Gm14760-201ENSMUST00000121831 999 ntBASIC13.61□□□□□ -0.23
Prpf40aQ9R1C7 Gm12347-201ENSMUST00000127883 470 ntTSL 3 BASIC13.61□□□□□ -0.23
Prpf40aQ9R1C7 Gm12678-201ENSMUST00000154177 692 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Prpf40aQ9R1C7 Mospd4-201ENSMUST00000180618 576 ntBASIC13.61□□□□□ -0.23
Prpf40aQ9R1C7 Gm5850-201ENSMUST00000192923 1206 ntBASIC13.61□□□□□ -0.23
Prpf40aQ9R1C7 Gm43118-201ENSMUST00000199149 775 ntBASIC13.61□□□□□ -0.23
Prpf40aQ9R1C7 Crip2-206ENSMUST00000200380 864 ntTSL 3 BASIC13.61□□□□□ -0.23
Prpf40aQ9R1C7 Gm43377-201ENSMUST00000201640 455 ntBASIC13.61□□□□□ -0.23
Prpf40aQ9R1C7 Ormdl2-204ENSMUST00000219524 724 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
Prpf40aQ9R1C7 AC108416.1-202ENSMUST00000228927 1201 ntBASIC13.61□□□□□ -0.23
Prpf40aQ9R1C7 Fgl1-201ENSMUST00000034003 1120 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Prpf40aQ9R1C7 Cldnd2-201ENSMUST00000040227 664 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Prpf40aQ9R1C7 Gm17080-201ENSMUST00000087588 811 ntTSL 5 BASIC13.61□□□□□ -0.23
Prpf40aQ9R1C7 Dnmt3l-205ENSMUST00000138785 1822 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Prpf40aQ9R1C7 Stox2-209ENSMUST00000211882 9696 ntTSL 5 BASIC13.61□□□□□ -0.23
Prpf40aQ9R1C7 Cdk13-207ENSMUST00000223490 12548 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Prpf40aQ9R1C7 Setd3-202ENSMUST00000109879 2387 ntTSL 3 BASIC13.61□□□□□ -0.23
Prpf40aQ9R1C7 Nup62cl-201ENSMUST00000101212 1996 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Prpf40aQ9R1C7 Lgr5-201ENSMUST00000020350 4714 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Prpf40aQ9R1C7 Ankrd35-201ENSMUST00000048427 4052 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Prpf40aQ9R1C7 Tfe3-203ENSMUST00000101695 2989 ntTSL 5 BASIC13.61□□□□□ -0.23
Prpf40aQ9R1C7 Cyth1-203ENSMUST00000106302 3119 ntAPPRIS P4 TSL 1 (best) BASIC13.61□□□□□ -0.23
Prpf40aQ9R1C7 Gm42890-202ENSMUST00000167642 2566 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Prpf40aQ9R1C7 Pabpc2-201ENSMUST00000063219 2586 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
Prpf40aQ9R1C7 Pogk-202ENSMUST00000128861 4848 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Prpf40aQ9R1C7 Gm14243-201ENSMUST00000131401 2172 ntTSL 2 BASIC13.61□□□□□ -0.23
Prpf40aQ9R1C7 Gm9279-201ENSMUST00000223175 1606 ntBASIC13.61□□□□□ -0.23
Prpf40aQ9R1C7 Ralgps2-207ENSMUST00000188656 2481 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Prpf40aQ9R1C7 Cog3-203ENSMUST00000227473 4197 ntBASIC13.61□□□□□ -0.23
Prpf40aQ9R1C7 Aff3-202ENSMUST00000039827 6010 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
Prpf40aQ9R1C7 Tfe3-204ENSMUST00000115677 2943 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Prpf40aQ9R1C7 Heatr3-202ENSMUST00000121949 3086 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Prpf40aQ9R1C7 Efemp2-209ENSMUST00000167371 1382 ntTSL 5 BASIC13.6□□□□□ -0.23
Prpf40aQ9R1C7 Flrt1-201ENSMUST00000113383 5859 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Prpf40aQ9R1C7 Rita1-207ENSMUST00000177800 1668 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 62 ms