Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Scn4aQ9ER60 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
Scn4aQ9ER60 Mdh1b-201ENSMUST00000114094 1719 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Scn4aQ9ER60 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC16.37■□□□□ 0.21
Scn4aQ9ER60 Nrg1-201ENSMUST00000073884 2452 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Scn4aQ9ER60 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Scn4aQ9ER60 N4bp2l1-201ENSMUST00000016279 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Scn4aQ9ER60 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Scn4aQ9ER60 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC16.37■□□□□ 0.21
Scn4aQ9ER60 Snx27-208ENSMUST00000200642 1308 ntTSL 5 BASIC16.37■□□□□ 0.21
Scn4aQ9ER60 Osr2-204ENSMUST00000228152 1324 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Scn4aQ9ER60 Upk3b-201ENSMUST00000062606 3530 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Scn4aQ9ER60 Rpl35a-205ENSMUST00000115079 510 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
Scn4aQ9ER60 Gm15549-201ENSMUST00000121595 622 ntBASIC16.37■□□□□ 0.21
Scn4aQ9ER60 Gm27191-201ENSMUST00000145973 448 ntTSL 3 BASIC16.37■□□□□ 0.21
Scn4aQ9ER60 Gm9192-201ENSMUST00000183221 985 ntBASIC16.37■□□□□ 0.21
Scn4aQ9ER60 Gm42689-201ENSMUST00000202403 404 ntBASIC16.37■□□□□ 0.21
Scn4aQ9ER60 Ift43-201ENSMUST00000054565 773 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Scn4aQ9ER60 Olfr981-201ENSMUST00000059859 997 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Scn4aQ9ER60 Rps18-201ENSMUST00000008812 600 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Scn4aQ9ER60 Gm44106-201ENSMUST00000203153 1599 ntBASIC16.37■□□□□ 0.21
Scn4aQ9ER60 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Scn4aQ9ER60 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
Scn4aQ9ER60 Cdsn-201ENSMUST00000044804 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Scn4aQ9ER60 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
Scn4aQ9ER60 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
Scn4aQ9ER60 Efna1-203ENSMUST00000118860 1403 ntTSL 5 BASIC16.36■□□□□ 0.21
Scn4aQ9ER60 Gm10392-201ENSMUST00000100807 1732 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
Scn4aQ9ER60 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Scn4aQ9ER60 Apaf1-207ENSMUST00000161987 2710 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Scn4aQ9ER60 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Scn4aQ9ER60 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Scn4aQ9ER60 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Scn4aQ9ER60 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Scn4aQ9ER60 Lpar1-201ENSMUST00000055018 3512 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
Scn4aQ9ER60 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
Scn4aQ9ER60 Hist1h4i-201ENSMUST00000102977 727 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
Scn4aQ9ER60 Srrm3os-201ENSMUST00000131896 1271 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Scn4aQ9ER60 Gm27444-201ENSMUST00000184157 137 ntBASIC16.36■□□□□ 0.21
Scn4aQ9ER60 Gm29543-201ENSMUST00000188138 967 ntBASIC16.36■□□□□ 0.21
Scn4aQ9ER60 Gm5040-201ENSMUST00000218609 800 ntBASIC16.36■□□□□ 0.21
Scn4aQ9ER60 AC103672.1-201ENSMUST00000227502 365 ntBASIC16.36■□□□□ 0.21
Scn4aQ9ER60 Defb29-201ENSMUST00000060598 462 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Scn4aQ9ER60 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Scn4aQ9ER60 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Scn4aQ9ER60 Celf2-225ENSMUST00000183091 2177 ntTSL 5 BASIC16.36■□□□□ 0.21
Scn4aQ9ER60 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Scn4aQ9ER60 Taf6-202ENSMUST00000110936 2308 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Scn4aQ9ER60 Cflar-204ENSMUST00000114309 2010 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Scn4aQ9ER60 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Scn4aQ9ER60 Pcbp3-203ENSMUST00000105411 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Scn4aQ9ER60 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Scn4aQ9ER60 Map7d2-202ENSMUST00000112470 1350 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Scn4aQ9ER60 Tcf4-249ENSMUST00000202435 2427 ntTSL 5 BASIC16.36■□□□□ 0.21
Scn4aQ9ER60 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Scn4aQ9ER60 Ubtf-203ENSMUST00000107115 3199 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Scn4aQ9ER60 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Scn4aQ9ER60 Gm11473-201ENSMUST00000118980 359 ntBASIC16.35■□□□□ 0.21
Scn4aQ9ER60 Gsta3-202ENSMUST00000121676 894 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Scn4aQ9ER60 Gm26313-201ENSMUST00000157770 308 ntBASIC16.35■□□□□ 0.21
Scn4aQ9ER60 Gm5976-201ENSMUST00000180794 996 ntBASIC16.35■□□□□ 0.21
Scn4aQ9ER60 Mir6934-201ENSMUST00000183965 62 ntBASIC16.35■□□□□ 0.21
Scn4aQ9ER60 Ighv5-8-202ENSMUST00000191967 337 ntBASIC16.35■□□□□ 0.21
Scn4aQ9ER60 Gm42660-201ENSMUST00000197733 947 ntBASIC16.35■□□□□ 0.21
Scn4aQ9ER60 4930557B06Rik-201ENSMUST00000200193 381 ntBASIC16.35■□□□□ 0.21
Scn4aQ9ER60 Chordc1-202ENSMUST00000213605 519 ntTSL 2 BASIC16.35■□□□□ 0.21
Scn4aQ9ER60 Lrp2bp-201ENSMUST00000066451 1525 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Scn4aQ9ER60 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Scn4aQ9ER60 Col15a1-203ENSMUST00000107730 1755 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Scn4aQ9ER60 Gm15997-201ENSMUST00000202188 1491 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Scn4aQ9ER60 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Scn4aQ9ER60 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Scn4aQ9ER60 Slc35a4-202ENSMUST00000050476 2362 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Scn4aQ9ER60 Sema6c-201ENSMUST00000090821 3933 ntAPPRIS P3 TSL 5 BASIC16.35■□□□□ 0.21
Scn4aQ9ER60 Thnsl2-202ENSMUST00000160918 2077 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Scn4aQ9ER60 Hyal3-202ENSMUST00000148440 1380 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Scn4aQ9ER60 Crmp1-201ENSMUST00000031004 2906 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Scn4aQ9ER60 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Scn4aQ9ER60 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Scn4aQ9ER60 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Scn4aQ9ER60 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Scn4aQ9ER60 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Scn4aQ9ER60 Ighv1-56-201ENSMUST00000103527 294 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
Scn4aQ9ER60 Gm5150-201ENSMUST00000108347 913 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Scn4aQ9ER60 4933428M09Rik-201ENSMUST00000113046 1026 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Scn4aQ9ER60 Cetn2-203ENSMUST00000114551 1286 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Scn4aQ9ER60 Gm14616-201ENSMUST00000131690 314 ntTSL 3 BASIC16.35■□□□□ 0.21
Scn4aQ9ER60 Map1lc3b-205ENSMUST00000181948 766 ntTSL 2 BASIC16.35■□□□□ 0.21
Scn4aQ9ER60 Mir6387-201ENSMUST00000184042 108 ntBASIC16.35■□□□□ 0.21
Scn4aQ9ER60 Gm29431-201ENSMUST00000189848 449 ntTSL 5 BASIC16.35■□□□□ 0.21
Scn4aQ9ER60 Gm44323-201ENSMUST00000198689 129 ntBASIC16.35■□□□□ 0.21
Scn4aQ9ER60 Ccdc30-203ENSMUST00000084307 989 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Scn4aQ9ER60 Mgat1-202ENSMUST00000101293 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Scn4aQ9ER60 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Scn4aQ9ER60 Gm29340-201ENSMUST00000188763 3854 ntBASIC16.35■□□□□ 0.21
Scn4aQ9ER60 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Scn4aQ9ER60 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
Scn4aQ9ER60 Pou4f3-201ENSMUST00000025374 2360 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Scn4aQ9ER60 Ankrd61-203ENSMUST00000110718 1774 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Scn4aQ9ER60 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 44.1 ms