Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Gm3096-201ENSMUST00000185770 364 ntBASIC12.68□□□□□ -0.38
Vps28Q9D1C8 Gm29585-203ENSMUST00000188089 835 ntTSL 5 BASIC12.68□□□□□ -0.38
Vps28Q9D1C8 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC12.68□□□□□ -0.38
Vps28Q9D1C8 H2-M10.2-201ENSMUST00000023845 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Vps28Q9D1C8 Txn2-201ENSMUST00000005487 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Vps28Q9D1C8 Pjvk-201ENSMUST00000099986 1219 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Vps28Q9D1C8 Urgcp-202ENSMUST00000093362 5089 ntAPPRIS P4 TSL 1 (best) BASIC12.68□□□□□ -0.38
Vps28Q9D1C8 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Vps28Q9D1C8 Csnk1a1-202ENSMUST00000163205 3204 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Vps28Q9D1C8 Hspa9-201ENSMUST00000025217 3049 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Vps28Q9D1C8 Rlbp1-202ENSMUST00000179243 2142 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Vps28Q9D1C8 Prom2-201ENSMUST00000028855 4796 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Vps28Q9D1C8 Trim26-205ENSMUST00000130367 3187 ntAPPRIS P2 TSL 5 BASIC12.68□□□□□ -0.38
Vps28Q9D1C8 Gm26599-201ENSMUST00000180590 3189 ntTSL 5 BASIC12.68□□□□□ -0.38
Vps28Q9D1C8 Pex2-206ENSMUST00000195855 1587 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Vps28Q9D1C8 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Vps28Q9D1C8 Slc44a4-201ENSMUST00000007249 2261 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Vps28Q9D1C8 Asxl1-205ENSMUST00000227428 6981 ntAPPRIS ALT2 BASIC12.68□□□□□ -0.38
Vps28Q9D1C8 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Vps28Q9D1C8 Luc7l2-207ENSMUST00000161227 2405 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Vps28Q9D1C8 Gm37105-201ENSMUST00000192251 2085 ntBASIC12.68□□□□□ -0.38
Vps28Q9D1C8 Myo10-201ENSMUST00000022882 5880 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Vps28Q9D1C8 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Vps28Q9D1C8 Ccng2-202ENSMUST00000121127 2570 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Vps28Q9D1C8 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Vps28Q9D1C8 Pfas-201ENSMUST00000021282 6373 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Vps28Q9D1C8 Cerk-203ENSMUST00000156546 2162 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Vps28Q9D1C8 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Vps28Q9D1C8 Col14a1-202ENSMUST00000110217 6457 ntAPPRIS ALT1 TSL 5 BASIC12.67□□□□□ -0.38
Vps28Q9D1C8 AC154262.2-202ENSMUST00000225158 1331 ntBASIC12.67□□□□□ -0.38
Vps28Q9D1C8 Rgs6-209ENSMUST00000186848 1472 ntTSL 5 BASIC12.67□□□□□ -0.38
Vps28Q9D1C8 Wdr18-201ENSMUST00000045247 3911 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Vps28Q9D1C8 Usp2-201ENSMUST00000034508 3867 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Vps28Q9D1C8 Dnmt3a-201ENSMUST00000020991 9685 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Vps28Q9D1C8 Kcna10-201ENSMUST00000055064 1913 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Vps28Q9D1C8 Gm11595-201ENSMUST00000107440 1200 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
Vps28Q9D1C8 Cdc26-202ENSMUST00000107459 654 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
Vps28Q9D1C8 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Vps28Q9D1C8 Gm12199-201ENSMUST00000137567 517 ntTSL 3 BASIC12.67□□□□□ -0.38
Vps28Q9D1C8 Gm20498-202ENSMUST00000164386 1043 ntTSL 2 BASIC12.67□□□□□ -0.38
Vps28Q9D1C8 1700040D17Rik-201ENSMUST00000181305 998 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Vps28Q9D1C8 Gm27046-201ENSMUST00000182160 463 ntBASIC12.67□□□□□ -0.38
Vps28Q9D1C8 Gm9022-201ENSMUST00000182482 992 ntBASIC12.67□□□□□ -0.38
Vps28Q9D1C8 Gm28882-201ENSMUST00000185504 314 ntBASIC12.67□□□□□ -0.38
Vps28Q9D1C8 Gm29054-201ENSMUST00000187589 1185 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Vps28Q9D1C8 Lsm7-201ENSMUST00000035775 468 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Vps28Q9D1C8 Ccs-201ENSMUST00000037246 1057 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Vps28Q9D1C8 Gm26035-201ENSMUST00000083065 308 ntBASIC12.67□□□□□ -0.38
Vps28Q9D1C8 Cma2-201ENSMUST00000089555 947 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Vps28Q9D1C8 Gm44207-201ENSMUST00000204568 1424 ntBASIC12.67□□□□□ -0.38
Vps28Q9D1C8 Samd4-201ENSMUST00000022386 4564 ntAPPRIS P4 TSL 1 (best) BASIC12.67□□□□□ -0.38
Vps28Q9D1C8 Cpped1-202ENSMUST00000096272 2663 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Vps28Q9D1C8 Rtn4-203ENSMUST00000102841 4060 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Vps28Q9D1C8 Esam-201ENSMUST00000002011 1865 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Vps28Q9D1C8 Gm11476-201ENSMUST00000127006 2019 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Vps28Q9D1C8 Terf2ip-201ENSMUST00000052138 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Vps28Q9D1C8 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Vps28Q9D1C8 Gm43417-201ENSMUST00000201586 5207 ntBASIC12.67□□□□□ -0.38
Vps28Q9D1C8 Map3k4-201ENSMUST00000089058 5305 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Vps28Q9D1C8 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Vps28Q9D1C8 Galntl6-208ENSMUST00000204128 5680 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Vps28Q9D1C8 2610011E03Rik-201ENSMUST00000200128 2235 ntBASIC12.66□□□□□ -0.38
Vps28Q9D1C8 Fnbp1-202ENSMUST00000075326 1761 ntTSL 5 BASIC12.66□□□□□ -0.38
Vps28Q9D1C8 Ikzf1-204ENSMUST00000076700 5163 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Vps28Q9D1C8 Msh6-201ENSMUST00000005503 4254 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Vps28Q9D1C8 Akt1-205ENSMUST00000128300 1342 ntTSL 5 BASIC12.66□□□□□ -0.38
Vps28Q9D1C8 Tsta3-201ENSMUST00000023231 1311 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Vps28Q9D1C8 Cacna2d1-201ENSMUST00000039370 3933 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Vps28Q9D1C8 Cldn15-201ENSMUST00000001790 1850 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Vps28Q9D1C8 D830024N08Rik-201ENSMUST00000212132 2899 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Vps28Q9D1C8 Rxfp3-201ENSMUST00000058007 4275 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
Vps28Q9D1C8 Myo7a-203ENSMUST00000107127 6806 ntAPPRIS P3 TSL 5 BASIC12.66□□□□□ -0.38
Vps28Q9D1C8 Mir877-201ENSMUST00000104738 85 ntBASIC12.66□□□□□ -0.38
Vps28Q9D1C8 Gm6370-201ENSMUST00000110611 1142 ntAPPRIS P2 TSL 5 BASIC12.66□□□□□ -0.38
Vps28Q9D1C8 Igf1-206ENSMUST00000122100 651 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Vps28Q9D1C8 E130006D01Rik-203ENSMUST00000137398 906 ntTSL 2 BASIC12.66□□□□□ -0.38
Vps28Q9D1C8 Gm14809-201ENSMUST00000152025 695 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Vps28Q9D1C8 Iqcf6-201ENSMUST00000171091 537 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Vps28Q9D1C8 Gm6309-201ENSMUST00000174320 1154 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Vps28Q9D1C8 Erdr1-201ENSMUST00000177591 774 ntAPPRIS P5 TSL 5 BASIC12.66□□□□□ -0.38
Vps28Q9D1C8 Gm38241-201ENSMUST00000192641 898 ntBASIC12.66□□□□□ -0.38
Vps28Q9D1C8 Gm42797-201ENSMUST00000197573 494 ntTSL 3 BASIC12.66□□□□□ -0.38
Vps28Q9D1C8 Gm8712-201ENSMUST00000221090 701 ntBASIC12.66□□□□□ -0.38
Vps28Q9D1C8 Ccdc30-202ENSMUST00000063642 2534 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Vps28Q9D1C8 Prex1-203ENSMUST00000109246 2386 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Vps28Q9D1C8 Prkar1b-203ENSMUST00000110890 2626 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Vps28Q9D1C8 Gm37391-201ENSMUST00000194891 2318 ntBASIC12.66□□□□□ -0.38
Vps28Q9D1C8 Zfp148-202ENSMUST00000165418 9431 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Vps28Q9D1C8 H2-T22-203ENSMUST00000080015 1761 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Vps28Q9D1C8 Myo1d-202ENSMUST00000070997 3106 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Vps28Q9D1C8 Gm42890-202ENSMUST00000167642 2566 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Vps28Q9D1C8 Pla2g3-202ENSMUST00000064265 2566 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Vps28Q9D1C8 Rabepk-207ENSMUST00000145903 2968 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Vps28Q9D1C8 Hars2-201ENSMUST00000019287 2002 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Vps28Q9D1C8 Atxn10-201ENSMUST00000163242 2425 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Vps28Q9D1C8 Gm10782-202ENSMUST00000223775 1480 ntBASIC12.65□□□□□ -0.38
Vps28Q9D1C8 Six4-202ENSMUST00000175693 6817 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
Vps28Q9D1C8 Foxp1-205ENSMUST00000113324 2121 ntTSL 5 BASIC12.65□□□□□ -0.38
Vps28Q9D1C8 Foxp1-207ENSMUST00000113328 2121 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Vps28Q9D1C8 Gm4219-201ENSMUST00000168140 2143 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 56.7 ms