Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Vps53Q8CCB4 Banp-201ENSMUST00000026354 1970 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Vps53Q8CCB4 Sufu-204ENSMUST00000120778 1850 ntTSL 2 BASIC14.4□□□□□ -0.1
Vps53Q8CCB4 Cflar-202ENSMUST00000097722 1771 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Vps53Q8CCB4 Mier1-205ENSMUST00000106858 4830 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
Vps53Q8CCB4 4933434E20Rik-206ENSMUST00000160640 2510 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Vps53Q8CCB4 Gm29052-201ENSMUST00000187700 1451 ntTSL 5 BASIC14.4□□□□□ -0.1
Vps53Q8CCB4 Gm10782-202ENSMUST00000223775 1480 ntBASIC14.4□□□□□ -0.1
Vps53Q8CCB4 Tmem25-201ENSMUST00000002100 2448 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Vps53Q8CCB4 Agrn-202ENSMUST00000105574 7193 ntTSL 5 BASIC14.4□□□□□ -0.1
Vps53Q8CCB4 Abhd1-202ENSMUST00000201125 1352 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Vps53Q8CCB4 Dnajb5-203ENSMUST00000098112 3093 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Vps53Q8CCB4 Smyd3-202ENSMUST00000111134 1229 ntTSL 2 BASIC14.4□□□□□ -0.1
Vps53Q8CCB4 Cabp1-203ENSMUST00000112112 746 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Vps53Q8CCB4 Wsb2-ps-201ENSMUST00000117937 1217 ntBASIC14.4□□□□□ -0.1
Vps53Q8CCB4 Gm15829-201ENSMUST00000145415 869 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Vps53Q8CCB4 Tmem205-202ENSMUST00000178988 862 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
Vps53Q8CCB4 Gm28379-201ENSMUST00000186450 554 ntTSL 5 BASIC14.4□□□□□ -0.1
Vps53Q8CCB4 Gm31256-201ENSMUST00000194705 506 ntBASIC14.4□□□□□ -0.1
Vps53Q8CCB4 Gm45418-202ENSMUST00000210693 649 ntTSL 5 BASIC14.4□□□□□ -0.1
Vps53Q8CCB4 AC169036.1-201ENSMUST00000227994 296 ntBASIC14.4□□□□□ -0.1
Vps53Q8CCB4 Fabp4-201ENSMUST00000029041 896 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Vps53Q8CCB4 Psma1-201ENSMUST00000033008 1201 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Vps53Q8CCB4 Olfr686-201ENSMUST00000050157 1018 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
Vps53Q8CCB4 Fmr1nb-202ENSMUST00000071848 842 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
Vps53Q8CCB4 Vmn1r213-201ENSMUST00000076897 1155 ntAPPRIS P2 BASIC14.4□□□□□ -0.1
Vps53Q8CCB4 Kcnt1-212ENSMUST00000197917 3711 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Vps53Q8CCB4 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Vps53Q8CCB4 Asrgl1-201ENSMUST00000049948 4195 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Vps53Q8CCB4 Crtc1-201ENSMUST00000076615 5683 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Vps53Q8CCB4 Cox19-201ENSMUST00000049630 2461 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Vps53Q8CCB4 2210406O10Rik-202ENSMUST00000122882 1743 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Vps53Q8CCB4 Serpinb12-202ENSMUST00000112724 1623 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Vps53Q8CCB4 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Vps53Q8CCB4 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Vps53Q8CCB4 Smug1-201ENSMUST00000064067 3281 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
Vps53Q8CCB4 Ncoa6-203ENSMUST00000109670 7101 ntAPPRIS P2 TSL 5 BASIC14.4□□□□□ -0.1
Vps53Q8CCB4 Plekhd1-201ENSMUST00000140770 3535 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Vps53Q8CCB4 Usp16-201ENSMUST00000026710 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Vps53Q8CCB4 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Vps53Q8CCB4 Zbtb42-203ENSMUST00000174780 3160 ntTSL 2 BASIC14.39□□□□□ -0.11
Vps53Q8CCB4 Arhgef2-203ENSMUST00000170653 4238 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Vps53Q8CCB4 Cplx1-201ENSMUST00000046892 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Vps53Q8CCB4 Gm10578-202ENSMUST00000211070 2876 ntTSL 2 BASIC14.39□□□□□ -0.11
Vps53Q8CCB4 D830024N08Rik-201ENSMUST00000212132 2899 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Vps53Q8CCB4 Gabrg3-201ENSMUST00000068394 1724 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Vps53Q8CCB4 Gm12502-201ENSMUST00000120197 444 ntBASIC14.39□□□□□ -0.11
Vps53Q8CCB4 Ggnbp1-202ENSMUST00000122106 1107 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Vps53Q8CCB4 Eif4e1b-204ENSMUST00000132005 706 ntTSL 2 BASIC14.39□□□□□ -0.11
Vps53Q8CCB4 1700003G18Rik-201ENSMUST00000140689 633 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Vps53Q8CCB4 Gm14809-201ENSMUST00000152025 695 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Vps53Q8CCB4 Gm17111-201ENSMUST00000169981 411 ntTSL 3 BASIC14.39□□□□□ -0.11
Vps53Q8CCB4 Anapc16-202ENSMUST00000182116 581 ntTSL 3 BASIC14.39□□□□□ -0.11
Vps53Q8CCB4 6530403H02Rik-204ENSMUST00000183276 659 ntTSL 3 BASIC14.39□□□□□ -0.11
Vps53Q8CCB4 AC147241.1-201ENSMUST00000222173 785 ntTSL 3 BASIC14.39□□□□□ -0.11
Vps53Q8CCB4 Crip3-201ENSMUST00000024764 955 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Vps53Q8CCB4 Cryba2-201ENSMUST00000006721 720 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Vps53Q8CCB4 Cbx3-ps1-201ENSMUST00000091539 545 ntBASIC14.39□□□□□ -0.11
Vps53Q8CCB4 Gm28590-201ENSMUST00000185679 1609 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Vps53Q8CCB4 Slc37a2-201ENSMUST00000115068 5943 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Vps53Q8CCB4 Wdr25-202ENSMUST00000167816 2657 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Vps53Q8CCB4 Sema4f-201ENSMUST00000000641 4086 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Vps53Q8CCB4 Zfp783-204ENSMUST00000130490 4419 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Vps53Q8CCB4 Dnaja2-201ENSMUST00000034138 2919 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Vps53Q8CCB4 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Vps53Q8CCB4 1500009C09Rik-201ENSMUST00000136948 1526 ntAPPRIS P5 TSL 3 BASIC14.39□□□□□ -0.11
Vps53Q8CCB4 Banp-210ENSMUST00000173254 1521 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Vps53Q8CCB4 Kiss1r-201ENSMUST00000045529 3163 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Vps53Q8CCB4 Calcoco1-201ENSMUST00000023818 2822 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Vps53Q8CCB4 Abra-201ENSMUST00000054742 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Vps53Q8CCB4 Smg7-203ENSMUST00000111836 3928 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Vps53Q8CCB4 Atp13a1-201ENSMUST00000034326 3915 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Vps53Q8CCB4 Ttc34-201ENSMUST00000050220 3200 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Vps53Q8CCB4 Klf11-201ENSMUST00000020982 4086 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Vps53Q8CCB4 Tex10-201ENSMUST00000030030 3102 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Vps53Q8CCB4 Rbm8a2-201ENSMUST00000104983 1338 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
Vps53Q8CCB4 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Vps53Q8CCB4 Skp2-203ENSMUST00000190131 1819 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Vps53Q8CCB4 Ttc17-202ENSMUST00000094801 3408 ntTSL 5 BASIC14.38□□□□□ -0.11
Vps53Q8CCB4 Ppp1r15a-201ENSMUST00000042105 2333 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Vps53Q8CCB4 Stab1-201ENSMUST00000036618 7999 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Vps53Q8CCB4 Serpinb2-202ENSMUST00000064916 1996 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Vps53Q8CCB4 Arhgap25-202ENSMUST00000101197 2493 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Vps53Q8CCB4 5830411N06Rik-202ENSMUST00000093984 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Vps53Q8CCB4 Tgm1-202ENSMUST00000168729 2852 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Vps53Q8CCB4 Olfr742-202ENSMUST00000213935 2117 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Vps53Q8CCB4 Lrrfip2-214ENSMUST00000217117 1363 ntTSL 5 BASIC14.38□□□□□ -0.11
Vps53Q8CCB4 Wdr59-201ENSMUST00000034437 4896 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Vps53Q8CCB4 Spata13-207ENSMUST00000160973 7467 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Vps53Q8CCB4 Nfic-203ENSMUST00000105321 6237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Vps53Q8CCB4 Snord83b-201ENSMUST00000104546 94 ntBASIC14.38□□□□□ -0.11
Vps53Q8CCB4 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
Vps53Q8CCB4 Lcn6-203ENSMUST00000114199 729 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Vps53Q8CCB4 Serf1-203ENSMUST00000132053 516 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Vps53Q8CCB4 Gm24990-201ENSMUST00000157406 323 ntBASIC14.38□□□□□ -0.11
Vps53Q8CCB4 Gm23363-201ENSMUST00000175024 79 ntBASIC14.38□□□□□ -0.11
Vps53Q8CCB4 Fam168a-206ENSMUST00000208013 1129 ntTSL 5 BASIC14.38□□□□□ -0.11
Vps53Q8CCB4 Gm18212-201ENSMUST00000211678 889 ntBASIC14.38□□□□□ -0.11
Vps53Q8CCB4 AC069562.3-201ENSMUST00000225387 587 ntBASIC14.38□□□□□ -0.11
Vps53Q8CCB4 Gm26035-201ENSMUST00000083065 308 ntBASIC14.38□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 46.2 ms