Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Gm37324-201ENSMUST00000194500 4504 ntBASIC12.96□□□□□ -0.33
Ccdc40Q8BI79 Vsx2-201ENSMUST00000021665 3270 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Ccdc40Q8BI79 Atp6v1h-201ENSMUST00000044369 2049 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Ccdc40Q8BI79 1110002L01Rik-202ENSMUST00000168012 3569 ntTSL 2 BASIC12.96□□□□□ -0.33
Ccdc40Q8BI79 Abca7-202ENSMUST00000132517 6696 ntAPPRIS P3 TSL 5 BASIC12.96□□□□□ -0.33
Ccdc40Q8BI79 Tmem159-202ENSMUST00000118737 1395 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
Ccdc40Q8BI79 Triobp-203ENSMUST00000109689 7187 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Ccdc40Q8BI79 Setdb1-201ENSMUST00000015841 4658 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
Ccdc40Q8BI79 Timm22-201ENSMUST00000021203 2817 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Ccdc40Q8BI79 Serpinb13-201ENSMUST00000027564 1607 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Ccdc40Q8BI79 Anks1b-224ENSMUST00000182960 3397 ntTSL 5 BASIC12.96□□□□□ -0.33
Ccdc40Q8BI79 Plekhb1-205ENSMUST00000107046 2793 ntAPPRIS ALT1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Ccdc40Q8BI79 Arfgap2-201ENSMUST00000028691 2791 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Ccdc40Q8BI79 Trpv4-204ENSMUST00000112222 2475 ntTSL 5 BASIC12.96□□□□□ -0.33
Ccdc40Q8BI79 Myo7a-203ENSMUST00000107127 6806 ntAPPRIS P3 TSL 5 BASIC12.96□□□□□ -0.33
Ccdc40Q8BI79 Dmbt1-201ENSMUST00000084509 6243 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
Ccdc40Q8BI79 4930550L24Rik-201ENSMUST00000062542 1572 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Ccdc40Q8BI79 Blvrb-202ENSMUST00000108357 782 ntTSL 2 BASIC12.96□□□□□ -0.33
Ccdc40Q8BI79 Snap25-202ENSMUST00000110098 1014 ntAPPRIS ALT1 TSL 3 BASIC12.96□□□□□ -0.33
Ccdc40Q8BI79 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Ccdc40Q8BI79 Gm595-201ENSMUST00000114928 2122 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Ccdc40Q8BI79 Mrps17-205ENSMUST00000119985 859 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
Ccdc40Q8BI79 Gm1335-201ENSMUST00000121653 386 ntBASIC12.96□□□□□ -0.33
Ccdc40Q8BI79 4930579D09Rik-201ENSMUST00000132321 469 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Ccdc40Q8BI79 Pelp1-202ENSMUST00000135148 562 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Ccdc40Q8BI79 Gm15444-201ENSMUST00000148335 388 ntTSL 5 BASIC12.96□□□□□ -0.33
Ccdc40Q8BI79 AI413582-204ENSMUST00000154473 836 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Ccdc40Q8BI79 Psme1-202ENSMUST00000172738 681 ntTSL 5 BASIC12.96□□□□□ -0.33
Ccdc40Q8BI79 Naa60-209ENSMUST00000175809 279 ntTSL 5 BASIC12.96□□□□□ -0.33
Ccdc40Q8BI79 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Ccdc40Q8BI79 Gm28411-201ENSMUST00000189864 341 ntTSL 3 BASIC12.96□□□□□ -0.33
Ccdc40Q8BI79 Ier3-201ENSMUST00000003635 1131 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Ccdc40Q8BI79 4933431E20Rik-201ENSMUST00000131345 5407 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Ccdc40Q8BI79 Syvn1-204ENSMUST00000138532 3464 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Ccdc40Q8BI79 Pfkfb3-213ENSMUST00000171188 2058 ntTSL 5 BASIC12.96□□□□□ -0.33
Ccdc40Q8BI79 Fmo2-202ENSMUST00000111510 2260 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Ccdc40Q8BI79 Trim45-204ENSMUST00000134993 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Ccdc40Q8BI79 Satb2-205ENSMUST00000177424 4694 ntTSL 5 BASIC12.96□□□□□ -0.34
Ccdc40Q8BI79 AC122840.1-201ENSMUST00000220915 3334 ntBASIC12.96□□□□□ -0.34
Ccdc40Q8BI79 Psd2-205ENSMUST00000176873 4375 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Ccdc40Q8BI79 Tk1-201ENSMUST00000026661 1440 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Ccdc40Q8BI79 Cdk13-207ENSMUST00000223490 12548 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Ccdc40Q8BI79 Il2rg-201ENSMUST00000033664 1670 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Ccdc40Q8BI79 E2f7-201ENSMUST00000073781 5473 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Ccdc40Q8BI79 Tmem80-204ENSMUST00000128906 1387 ntTSL 2 BASIC12.95□□□□□ -0.34
Ccdc40Q8BI79 Aph1a-201ENSMUST00000015894 2863 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Ccdc40Q8BI79 Arhgef2-207ENSMUST00000175903 3356 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Ccdc40Q8BI79 Otop1-201ENSMUST00000063136 3106 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Ccdc40Q8BI79 Opcml-201ENSMUST00000073822 2378 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Ccdc40Q8BI79 Plekhg2-201ENSMUST00000094644 4623 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Ccdc40Q8BI79 Tsga10-202ENSMUST00000088072 3837 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Ccdc40Q8BI79 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Ccdc40Q8BI79 Fhl1-204ENSMUST00000114772 2283 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Ccdc40Q8BI79 Gja5-203ENSMUST00000199597 3668 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Ccdc40Q8BI79 Ambra1-204ENSMUST00000111316 5063 ntTSL 5 BASIC12.95□□□□□ -0.34
Ccdc40Q8BI79 Mroh1-204ENSMUST00000159218 5085 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Ccdc40Q8BI79 Cd72-201ENSMUST00000030179 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Ccdc40Q8BI79 Padi2-201ENSMUST00000030765 4774 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Ccdc40Q8BI79 Gfm1-201ENSMUST00000077271 4078 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Ccdc40Q8BI79 R3hdml-201ENSMUST00000109416 1094 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Ccdc40Q8BI79 Cdkn1a-202ENSMUST00000119901 748 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
Ccdc40Q8BI79 C87198-201ENSMUST00000173553 1045 ntTSL 3 BASIC12.95□□□□□ -0.34
Ccdc40Q8BI79 Gm28139-201ENSMUST00000189480 643 ntTSL 5 BASIC12.95□□□□□ -0.34
Ccdc40Q8BI79 Gm9299-201ENSMUST00000206392 1140 ntBASIC12.95□□□□□ -0.34
Ccdc40Q8BI79 AC152453.1-201ENSMUST00000218802 1254 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Ccdc40Q8BI79 Gm10371-202ENSMUST00000228010 1081 ntBASIC12.95□□□□□ -0.34
Ccdc40Q8BI79 Bst2-201ENSMUST00000051672 792 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Ccdc40Q8BI79 Gm9955-201ENSMUST00000067987 309 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
Ccdc40Q8BI79 Gm24526-201ENSMUST00000082921 158 ntBASIC12.95□□□□□ -0.34
Ccdc40Q8BI79 Gm26035-201ENSMUST00000083065 308 ntBASIC12.95□□□□□ -0.34
Ccdc40Q8BI79 Ap2s1-201ENSMUST00000086112 836 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Ccdc40Q8BI79 Traf3ip2-201ENSMUST00000019987 2867 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Ccdc40Q8BI79 Fam189b-201ENSMUST00000041913 3083 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Ccdc40Q8BI79 AC174678.2-201ENSMUST00000156420 3275 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Ccdc40Q8BI79 Pcca-201ENSMUST00000038374 2592 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Ccdc40Q8BI79 Gm10339-203ENSMUST00000225409 1671 ntBASIC12.95□□□□□ -0.34
Ccdc40Q8BI79 Vmp1-201ENSMUST00000018315 2787 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Ccdc40Q8BI79 Eya1-202ENSMUST00000080664 3426 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Ccdc40Q8BI79 Scrn3-202ENSMUST00000112050 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Ccdc40Q8BI79 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Ccdc40Q8BI79 Gm7553-201ENSMUST00000185805 1426 ntBASIC12.95□□□□□ -0.34
Ccdc40Q8BI79 Nin-204ENSMUST00000169074 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Ccdc40Q8BI79 Tmx2-203ENSMUST00000111665 2282 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Ccdc40Q8BI79 Gm26878-201ENSMUST00000181778 1644 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Ccdc40Q8BI79 Polm-201ENSMUST00000020767 2924 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Ccdc40Q8BI79 Prf1-202ENSMUST00000219375 2474 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Ccdc40Q8BI79 Pprc1-201ENSMUST00000062322 5205 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Ccdc40Q8BI79 Rabif-201ENSMUST00000047978 2861 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Ccdc40Q8BI79 Kcnt1-212ENSMUST00000197917 3711 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Ccdc40Q8BI79 Gm8617-201ENSMUST00000118796 2222 ntBASIC12.94□□□□□ -0.34
Ccdc40Q8BI79 Pex2-206ENSMUST00000195855 1587 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Ccdc40Q8BI79 Camkv-204ENSMUST00000194206 2827 ntTSL 5 BASIC12.94□□□□□ -0.34
Ccdc40Q8BI79 Gm45266-201ENSMUST00000210111 2173 ntBASIC12.94□□□□□ -0.34
Ccdc40Q8BI79 AC114008.2-201ENSMUST00000227699 1347 ntBASIC12.94□□□□□ -0.34
Ccdc40Q8BI79 Gm5620-201ENSMUST00000077991 1348 ntBASIC12.94□□□□□ -0.34
Ccdc40Q8BI79 Gm21964-203ENSMUST00000219454 1513 ntAPPRIS P5 TSL 5 BASIC12.94□□□□□ -0.34
Ccdc40Q8BI79 Glo1-201ENSMUST00000024823 1935 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Ccdc40Q8BI79 Pcdh12-203ENSMUST00000194012 2702 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Ccdc40Q8BI79 Nop14-201ENSMUST00000041364 2702 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Ccdc40Q8BI79 Plch2-206ENSMUST00000135665 4349 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 37.8 ms