Protein–RNA interactions for Protein: P49135

Ercc3, General transcription and DNA repair factor IIH helicase subunit XPB, mousemouse

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ercc3P49135 Gm7049-201ENSMUST00000223520 1712 ntBASIC14.68□□□□□ -0.06
Ercc3P49135 Rassf8-201ENSMUST00000032388 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Ercc3P49135 Gm17089-201ENSMUST00000171098 1394 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Ercc3P49135 Fip1l1-201ENSMUST00000080164 4673 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
Ercc3P49135 Ap5b1-201ENSMUST00000096318 3092 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Ercc3P49135 Gm5884-201ENSMUST00000036712 1479 ntBASIC14.68□□□□□ -0.06
Ercc3P49135 Oas1f-201ENSMUST00000057814 1480 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Ercc3P49135 Chst4-201ENSMUST00000109222 1942 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Ercc3P49135 Muc6-202ENSMUST00000189314 5087 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Ercc3P49135 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Ercc3P49135 Wdr25-202ENSMUST00000167816 2657 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
Ercc3P49135 Gm28043-201ENSMUST00000130871 6521 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
Ercc3P49135 Steap3-204ENSMUST00000112643 2873 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Ercc3P49135 Tsta3-201ENSMUST00000023231 1311 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Ercc3P49135 Ripk3-201ENSMUST00000022830 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Ercc3P49135 4933427G23Rik-201ENSMUST00000122963 2515 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Ercc3P49135 Zfp341-202ENSMUST00000109702 3162 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
Ercc3P49135 Kifc1-201ENSMUST00000114361 2260 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
Ercc3P49135 Spock1-202ENSMUST00000185502 4614 ntAPPRIS ALT1 TSL 5 BASIC14.67□□□□□ -0.06
Ercc3P49135 Ttc3-202ENSMUST00000119131 3212 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Ercc3P49135 Gm37472-201ENSMUST00000192342 4052 ntBASIC14.67□□□□□ -0.06
Ercc3P49135 Hexim2-201ENSMUST00000062530 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Ercc3P49135 Gm9083-201ENSMUST00000120423 819 ntBASIC14.67□□□□□ -0.06
Ercc3P49135 A630014C17Rik-201ENSMUST00000150973 2984 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Ercc3P49135 4732440D04Rik-202ENSMUST00000159618 413 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Ercc3P49135 Gm17227-202ENSMUST00000170286 1016 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Ercc3P49135 Gm29585-203ENSMUST00000188089 835 ntTSL 5 BASIC14.67□□□□□ -0.06
Ercc3P49135 Gm38241-201ENSMUST00000192641 898 ntBASIC14.67□□□□□ -0.06
Ercc3P49135 Gm31256-201ENSMUST00000194705 506 ntBASIC14.67□□□□□ -0.06
Ercc3P49135 4930404N11Rik-201ENSMUST00000020456 691 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Ercc3P49135 Gm21769-201ENSMUST00000211922 111 ntBASIC14.67□□□□□ -0.06
Ercc3P49135 Scoc-203ENSMUST00000212031 409 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
Ercc3P49135 AC156504.2-201ENSMUST00000213800 711 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Ercc3P49135 Gm6082-201ENSMUST00000215204 454 ntBASIC14.67□□□□□ -0.06
Ercc3P49135 Prr13-201ENSMUST00000023810 1224 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Ercc3P49135 Tmem50a-201ENSMUST00000030626 1204 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Ercc3P49135 Fmr1nb-202ENSMUST00000071848 842 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
Ercc3P49135 Klk1b16-201ENSMUST00000005933 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Ercc3P49135 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Ercc3P49135 Chpf2-201ENSMUST00000088295 5371 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
Ercc3P49135 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Ercc3P49135 Nmbr-201ENSMUST00000020015 1599 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Ercc3P49135 Tcf4-254ENSMUST00000202674 2615 ntTSL 5 BASIC14.67□□□□□ -0.06
Ercc3P49135 Ttc33-203ENSMUST00000118193 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Ercc3P49135 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
Ercc3P49135 Pik3r6-201ENSMUST00000060441 3237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Ercc3P49135 Zfp429-201ENSMUST00000109732 2056 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Ercc3P49135 Acvrl1-205ENSMUST00000120754 3506 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
Ercc3P49135 C030034I22Rik-202ENSMUST00000188481 4231 ntBASIC14.67□□□□□ -0.06
Ercc3P49135 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Ercc3P49135 D230017M19Rik-201ENSMUST00000180722 3096 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Ercc3P49135 Rtn4-203ENSMUST00000102841 4060 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Ercc3P49135 Gm36445-201ENSMUST00000209344 1432 ntTSL 5 BASIC14.66□□□□□ -0.06
Ercc3P49135 Hmga1-203ENSMUST00000117600 1635 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Ercc3P49135 2610001J05Rik-203ENSMUST00000185219 1606 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
Ercc3P49135 Mapk3-203ENSMUST00000091328 1716 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Ercc3P49135 Ggt6-201ENSMUST00000076443 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Ercc3P49135 Lins1-202ENSMUST00000077967 2647 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
Ercc3P49135 Riok1-201ENSMUST00000021866 2738 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Ercc3P49135 Ivns1abp-202ENSMUST00000097543 3337 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Ercc3P49135 Pgpep1-201ENSMUST00000070173 4883 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Ercc3P49135 Camsap3-205ENSMUST00000207432 3865 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Ercc3P49135 Drc1-201ENSMUST00000101448 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Ercc3P49135 Gpr107-201ENSMUST00000056433 6134 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Ercc3P49135 Cyp4f17-201ENSMUST00000165999 1693 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
Ercc3P49135 Rhox2c-201ENSMUST00000115190 762 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
Ercc3P49135 Gm14381-201ENSMUST00000122105 414 ntBASIC14.66□□□□□ -0.06
Ercc3P49135 Gm11961-202ENSMUST00000141157 760 ntTSL 3 BASIC14.66□□□□□ -0.06
Ercc3P49135 C230066G23Rik-201ENSMUST00000150195 650 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Ercc3P49135 Egfl7-209ENSMUST00000150404 892 ntAPPRIS P4 TSL 5 BASIC14.66□□□□□ -0.06
Ercc3P49135 Cox16-204ENSMUST00000166723 579 ntTSL 2 BASIC14.66□□□□□ -0.06
Ercc3P49135 Gm27023-201ENSMUST00000182372 285 ntBASIC14.66□□□□□ -0.06
Ercc3P49135 Gm33115-201ENSMUST00000220913 743 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Ercc3P49135 Gm9257-201ENSMUST00000221254 232 ntBASIC14.66□□□□□ -0.06
Ercc3P49135 Trpt1-201ENSMUST00000088223 1142 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Ercc3P49135 Mcph1-201ENSMUST00000039412 4662 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Ercc3P49135 Wdfy1-204ENSMUST00000113512 4551 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Ercc3P49135 Wdfy1-205ENSMUST00000113513 4551 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
Ercc3P49135 Wdfy1-206ENSMUST00000113514 4551 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Ercc3P49135 Wdfy1-207ENSMUST00000113515 4551 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Ercc3P49135 Cercam-201ENSMUST00000047521 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Ercc3P49135 Zc3h12d-201ENSMUST00000039484 4092 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Ercc3P49135 Rftn2-202ENSMUST00000114428 2012 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Ercc3P49135 Chrna9-201ENSMUST00000031108 1843 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Ercc3P49135 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
Ercc3P49135 Rnf44-218ENSMUST00000177950 3941 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Ercc3P49135 Kmt5b-207ENSMUST00000113974 4150 ntAPPRIS P3 TSL 5 BASIC14.66□□□□□ -0.06
Ercc3P49135 Hipk4-201ENSMUST00000037134 2926 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Ercc3P49135 Vcl-201ENSMUST00000022369 5267 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Ercc3P49135 Mettl27-201ENSMUST00000047196 2808 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Ercc3P49135 Arfgap1-204ENSMUST00000108861 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Ercc3P49135 Gm26819-201ENSMUST00000180656 5128 ntTSL 5 BASIC14.65□□□□□ -0.06
Ercc3P49135 Sesn3-204ENSMUST00000208222 9125 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Ercc3P49135 Nudt5-205ENSMUST00000179748 1590 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
Ercc3P49135 Gm18227-201ENSMUST00000211082 1468 ntBASIC14.65□□□□□ -0.06
Ercc3P49135 Olfr279-202ENSMUST00000205772 5330 ntAPPRIS P1 TSL 3 BASIC14.65□□□□□ -0.06
Ercc3P49135 Gm37437-201ENSMUST00000194451 1937 ntBASIC14.65□□□□□ -0.06
Ercc3P49135 Rbm48-201ENSMUST00000042753 2368 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Ercc3P49135 Psd-210ENSMUST00000225323 3398 ntAPPRIS ALT2 BASIC14.65□□□□□ -0.06
Ercc3P49135 Gm5441-202ENSMUST00000190132 449 ntTSL 2 BASIC14.65□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 33.6 ms