Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Cxcl12-203ENSMUST00000112871 3132 ntAPPRIS P4 TSL 1 (best) BASIC10.08□□□□□ -0.8
Sdc1P18828 Sema4c-202ENSMUST00000191642 3892 ntAPPRIS P1 TSL 5 BASIC10.08□□□□□ -0.8
Sdc1P18828 Th-201ENSMUST00000000219 1829 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Sdc1P18828 Pip5k1b-201ENSMUST00000025800 2573 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Sdc1P18828 Ces3b-201ENSMUST00000074403 1907 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Sdc1P18828 Dctn1-205ENSMUST00000113919 4292 ntAPPRIS P3 TSL 1 (best) BASIC10.08□□□□□ -0.8
Sdc1P18828 Sema5b-201ENSMUST00000050625 4350 ntAPPRIS P2 TSL 1 (best) BASIC10.08□□□□□ -0.8
Sdc1P18828 Adgre5-203ENSMUST00000109802 2867 ntAPPRIS ALT2 TSL 5 BASIC10.08□□□□□ -0.8
Sdc1P18828 Dll4-201ENSMUST00000102517 3747 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Sdc1P18828 Hist3h2bb-ps-201ENSMUST00000117558 465 ntBASIC10.08□□□□□ -0.8
Sdc1P18828 Prkaca-ps1-201ENSMUST00000120823 919 ntBASIC10.08□□□□□ -0.8
Sdc1P18828 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC10.08□□□□□ -0.8
Sdc1P18828 S100a14-201ENSMUST00000164481 915 ntTSL 2 BASIC10.08□□□□□ -0.8
Sdc1P18828 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC10.08□□□□□ -0.8
Sdc1P18828 Gm3436-201ENSMUST00000179930 840 ntBASIC10.08□□□□□ -0.8
Sdc1P18828 Gm20324-201ENSMUST00000186291 1118 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Sdc1P18828 Gm37117-201ENSMUST00000194238 589 ntTSL 5 BASIC10.08□□□□□ -0.8
Sdc1P18828 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC10.08□□□□□ -0.8
Sdc1P18828 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Sdc1P18828 Gm38411-201ENSMUST00000197971 941 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Sdc1P18828 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Sdc1P18828 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC10.08□□□□□ -0.8
Sdc1P18828 Bloc1s5-203ENSMUST00000224902 612 ntBASIC10.08□□□□□ -0.8
Sdc1P18828 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC10.08□□□□□ -0.8
Sdc1P18828 Otos-201ENSMUST00000053144 704 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Sdc1P18828 Atg9b-201ENSMUST00000059401 3902 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Sdc1P18828 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Sdc1P18828 Gm13332-201ENSMUST00000120451 1398 ntBASIC10.08□□□□□ -0.8
Sdc1P18828 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC10.08□□□□□ -0.8
Sdc1P18828 Rab3gap2-204ENSMUST00000194740 4418 ntAPPRIS ALT2 TSL 5 BASIC10.08□□□□□ -0.8
Sdc1P18828 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC10.08□□□□□ -0.8
Sdc1P18828 Tmem269-201ENSMUST00000030394 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC10.08□□□□□ -0.8
Sdc1P18828 Cyb5r3-202ENSMUST00000162178 2547 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Sdc1P18828 Pigm-201ENSMUST00000052455 7554 ntAPPRIS P1 BASIC10.08□□□□□ -0.8
Sdc1P18828 Son-203ENSMUST00000117633 8731 ntAPPRIS ALT2 TSL 5 BASIC10.08□□□□□ -0.8
Sdc1P18828 Gmppb-202ENSMUST00000112295 2702 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Sdc1P18828 Ank2-221ENSMUST00000182994 2715 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Sdc1P18828 Arpp21-223ENSMUST00000162097 3952 ntAPPRIS P1 TSL 5 BASIC10.08□□□□□ -0.8
Sdc1P18828 Gm11725-201ENSMUST00000125607 1850 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Sdc1P18828 Cdc42ep4-202ENSMUST00000106616 3405 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Sdc1P18828 Aqp6-201ENSMUST00000023754 2060 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Sdc1P18828 AC154314.2-201ENSMUST00000223677 3502 ntBASIC10.08□□□□□ -0.8
Sdc1P18828 Cdc37l1-201ENSMUST00000050148 5179 ntAPPRIS P2 TSL 1 (best) BASIC10.08□□□□□ -0.8
Sdc1P18828 A430033K04Rik-203ENSMUST00000198958 2264 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Sdc1P18828 Nek1-208ENSMUST00000211256 4810 ntAPPRIS ALT2 TSL 1 (best) BASIC10.08□□□□□ -0.8
Sdc1P18828 L1cam-202ENSMUST00000102871 5113 ntAPPRIS P2 TSL 1 (best) BASIC10.08□□□□□ -0.8
Sdc1P18828 Plekhg6-201ENSMUST00000042647 3299 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Sdc1P18828 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC10.07□□□□□ -0.8
Sdc1P18828 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Sdc1P18828 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Sdc1P18828 Cyp2t4-202ENSMUST00000164093 1512 ntAPPRIS P2 TSL 5 BASIC10.07□□□□□ -0.8
Sdc1P18828 Gm9361-201ENSMUST00000198695 1507 ntBASIC10.07□□□□□ -0.8
Sdc1P18828 Cnbp-209ENSMUST00000204890 1614 ntAPPRIS ALT1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Sdc1P18828 Aldoc-202ENSMUST00000102478 1700 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Sdc1P18828 Gm10544-202ENSMUST00000181887 1923 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Sdc1P18828 Stxbp5l-204ENSMUST00000114781 3544 ntAPPRIS ALT2 TSL 5 BASIC10.07□□□□□ -0.8
Sdc1P18828 Bmp3-203ENSMUST00000200388 6609 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Sdc1P18828 Gm20696-201ENSMUST00000155466 3560 ntAPPRIS P1 TSL 2 BASIC10.07□□□□□ -0.8
Sdc1P18828 Myzap-201ENSMUST00000093823 2283 ntAPPRIS P2 TSL 1 (best) BASIC10.07□□□□□ -0.8
Sdc1P18828 Qrsl1-201ENSMUST00000020012 1981 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Sdc1P18828 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC10.07□□□□□ -0.8
Sdc1P18828 Zfp61-208ENSMUST00000165241 1668 ntAPPRIS P1 TSL 5 BASIC10.07□□□□□ -0.8
Sdc1P18828 H2-M2-201ENSMUST00000016427 1550 ntAPPRIS P3 TSL 1 (best) BASIC10.07□□□□□ -0.8
Sdc1P18828 Ccdc167-202ENSMUST00000128751 1365 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Sdc1P18828 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC10.07□□□□□ -0.8
Sdc1P18828 Gm12201-201ENSMUST00000120657 1234 ntBASIC10.07□□□□□ -0.8
Sdc1P18828 Gm14508-201ENSMUST00000127049 901 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Sdc1P18828 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC10.07□□□□□ -0.8
Sdc1P18828 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC10.07□□□□□ -0.8
Sdc1P18828 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC10.07□□□□□ -0.8
Sdc1P18828 Glo1-202ENSMUST00000167624 895 ntAPPRIS P1 TSL 2 BASIC10.07□□□□□ -0.8
Sdc1P18828 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC10.07□□□□□ -0.8
Sdc1P18828 Gm5312-201ENSMUST00000203728 547 ntBASIC10.07□□□□□ -0.8
Sdc1P18828 AC154846.1-201ENSMUST00000226278 862 ntBASIC10.07□□□□□ -0.8
Sdc1P18828 Gm16372-201ENSMUST00000073088 450 ntBASIC10.07□□□□□ -0.8
Sdc1P18828 Pip5k1a-204ENSMUST00000107232 3437 ntAPPRIS ALT2 TSL 5 BASIC10.07□□□□□ -0.8
Sdc1P18828 BC004004-201ENSMUST00000064709 2803 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Sdc1P18828 Arnt2-213ENSMUST00000209133 6228 ntAPPRIS ALT2 TSL 5 BASIC10.07□□□□□ -0.8
Sdc1P18828 Zfp112-204ENSMUST00000215113 2628 ntAPPRIS ALT2 TSL 5 BASIC10.07□□□□□ -0.8
Sdc1P18828 Morc3-206ENSMUST00000202261 4175 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Sdc1P18828 Morc3-201ENSMUST00000044068 4178 ntAPPRIS P1 TSL 5 BASIC10.07□□□□□ -0.8
Sdc1P18828 Vill-202ENSMUST00000074734 2440 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Sdc1P18828 Nr2c1-202ENSMUST00000099343 2413 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Sdc1P18828 Mbnl2-208ENSMUST00000227594 2334 ntAPPRIS P1 BASIC10.07□□□□□ -0.8
Sdc1P18828 Ramp1-201ENSMUST00000097648 2325 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Sdc1P18828 Trim35-201ENSMUST00000022623 3678 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Sdc1P18828 Xpnpep1-211ENSMUST00000183274 2120 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Sdc1P18828 Nicn1-201ENSMUST00000035227 2133 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Sdc1P18828 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Sdc1P18828 Jam3-201ENSMUST00000034472 1942 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Sdc1P18828 Prok1-202ENSMUST00000197758 3063 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Sdc1P18828 4632404M16Rik-201ENSMUST00000197326 2882 ntBASIC10.07□□□□□ -0.8
Sdc1P18828 Gm28590-201ENSMUST00000185679 1609 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Sdc1P18828 Mmel1-203ENSMUST00000105634 2669 ntAPPRIS ALT2 TSL 5 BASIC10.07□□□□□ -0.8
Sdc1P18828 AC127597.1-201ENSMUST00000225697 5711 ntBASIC10.07□□□□□ -0.8
Sdc1P18828 Lyar-202ENSMUST00000114106 1504 ntAPPRIS P1 TSL 5 BASIC10.07□□□□□ -0.8
Sdc1P18828 Ociad1-201ENSMUST00000031038 1523 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Sdc1P18828 Gm9816-201ENSMUST00000122292 1414 ntBASIC10.07□□□□□ -0.8
Sdc1P18828 Gm45338-207ENSMUST00000211499 1405 ntTSL 5 BASIC10.07□□□□□ -0.8
Sdc1P18828 Vcp-201ENSMUST00000030164 3316 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Retrieved 100 of 76,532 protein–RNA pairs in 64.5 ms