Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gm19078-201ENSMUST00000206311 727 ntBASIC10.21□□□□□ -0.77
Hmgb3O54879 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Hmgb3O54879 CT943659.1-201ENSMUST00000215459 326 ntBASIC10.21□□□□□ -0.77
Hmgb3O54879 Ins2-201ENSMUST00000000220 478 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Hmgb3O54879 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Hmgb3O54879 Lcn10-201ENSMUST00000058912 1106 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Hmgb3O54879 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Hmgb3O54879 Tmem56-204ENSMUST00000135818 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC10.21□□□□□ -0.78
Hmgb3O54879 Fgf17-202ENSMUST00000227123 1336 ntBASIC10.21□□□□□ -0.78
Hmgb3O54879 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Hmgb3O54879 Pnmal2-201ENSMUST00000094807 4147 ntAPPRIS P1 BASIC10.21□□□□□ -0.78
Hmgb3O54879 Man2c1-215ENSMUST00000161182 2909 ntTSL 5 BASIC10.21□□□□□ -0.78
Hmgb3O54879 Akt2-201ENSMUST00000051356 2923 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Hmgb3O54879 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC10.21□□□□□ -0.78
Hmgb3O54879 Mapk3-203ENSMUST00000091328 1716 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
Hmgb3O54879 4931406C07Rik-208ENSMUST00000216955 1750 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
Hmgb3O54879 Zfp426-202ENSMUST00000115562 3557 ntAPPRIS P3 TSL 1 (best) BASIC10.21□□□□□ -0.78
Hmgb3O54879 Zfp24-201ENSMUST00000066497 5732 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Hmgb3O54879 Phactr2-201ENSMUST00000079698 1934 ntAPPRIS ALT2 TSL 5 BASIC10.21□□□□□ -0.78
Hmgb3O54879 H3f3b-201ENSMUST00000016703 1993 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Hmgb3O54879 Abhd6-203ENSMUST00000225234 1958 ntBASIC10.21□□□□□ -0.78
Hmgb3O54879 Rgs11-202ENSMUST00000122058 2005 ntAPPRIS ALT2 TSL 2 BASIC10.21□□□□□ -0.78
Hmgb3O54879 Map4-214ENSMUST00000199498 4055 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
Hmgb3O54879 Ripor1-201ENSMUST00000043531 4108 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Hmgb3O54879 Kcnma1-212ENSMUST00000188285 4440 ntAPPRIS P4 TSL 1 (best) BASIC10.21□□□□□ -0.78
Hmgb3O54879 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC10.21□□□□□ -0.78
Hmgb3O54879 Gm15594-201ENSMUST00000137958 2215 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
Hmgb3O54879 Hyou1-206ENSMUST00000161318 4489 ntAPPRIS P1 TSL 5 BASIC10.21□□□□□ -0.78
Hmgb3O54879 Dhx38-201ENSMUST00000042601 4463 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Hmgb3O54879 Cd19-204ENSMUST00000206325 2452 ntAPPRIS P2 TSL 1 (best) BASIC10.21□□□□□ -0.78
Hmgb3O54879 Morc2a-201ENSMUST00000093389 5085 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Hmgb3O54879 L1cam-202ENSMUST00000102871 5113 ntAPPRIS P2 TSL 1 (best) BASIC10.21□□□□□ -0.78
Hmgb3O54879 Olfr731-203ENSMUST00000214152 5572 ntAPPRIS P1 TSL 5 BASIC10.2□□□□□ -0.78
Hmgb3O54879 Spred2-201ENSMUST00000093298 2852 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Hmgb3O54879 Tmem246-201ENSMUST00000042750 2989 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Hmgb3O54879 Zfp862-ps-201ENSMUST00000203457 3282 ntBASIC10.2□□□□□ -0.78
Hmgb3O54879 Rmi1-201ENSMUST00000042450 3855 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Hmgb3O54879 Nlrp6-203ENSMUST00000183845 4436 ntAPPRIS P2 TSL 1 (best) BASIC10.2□□□□□ -0.78
Hmgb3O54879 Trf-203ENSMUST00000112645 2339 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Hmgb3O54879 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Hmgb3O54879 Gm13813-201ENSMUST00000120998 787 ntBASIC10.2□□□□□ -0.78
Hmgb3O54879 Gm20521-201ENSMUST00000134077 1245 ntAPPRIS P1 TSL 5 BASIC10.2□□□□□ -0.78
Hmgb3O54879 Sf3a2-204ENSMUST00000151928 781 ntTSL 5 BASIC10.2□□□□□ -0.78
Hmgb3O54879 Mmel1-207ENSMUST00000163732 2935 ntAPPRIS P2 TSL 1 (best) BASIC10.2□□□□□ -0.78
Hmgb3O54879 Jarid2-208ENSMUST00000173246 5997 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Hmgb3O54879 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Hmgb3O54879 4930432B10Rik-201ENSMUST00000181688 2085 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Hmgb3O54879 1300002E11Rik-202ENSMUST00000181780 1650 ntTSL 2 BASIC10.2□□□□□ -0.78
Hmgb3O54879 2310040G24Rik-202ENSMUST00000189386 775 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Hmgb3O54879 Bckdhb-205ENSMUST00000190166 1398 ntAPPRIS P3 TSL 1 (best) BASIC10.2□□□□□ -0.78
Hmgb3O54879 Gm38100-201ENSMUST00000194391 1329 ntAPPRIS ALT2 BASIC10.2□□□□□ -0.78
Hmgb3O54879 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC10.2□□□□□ -0.78
Hmgb3O54879 Gm43858-201ENSMUST00000199418 1778 ntBASIC10.2□□□□□ -0.78
Hmgb3O54879 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC10.2□□□□□ -0.78
Hmgb3O54879 Coa6-202ENSMUST00000211868 564 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Hmgb3O54879 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Hmgb3O54879 Nrde2-201ENSMUST00000021596 3718 ntAPPRIS P1 TSL 5 BASIC10.2□□□□□ -0.78
Hmgb3O54879 4933412E12Rik-201ENSMUST00000217853 1698 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Hmgb3O54879 Plekhn1-203ENSMUST00000217885 1982 ntTSL 5 BASIC10.2□□□□□ -0.78
Hmgb3O54879 Gm7775-201ENSMUST00000218871 853 ntBASIC10.2□□□□□ -0.78
Hmgb3O54879 Gm18630-201ENSMUST00000222109 1397 ntBASIC10.2□□□□□ -0.78
Hmgb3O54879 Exoc3l4-209ENSMUST00000222897 2665 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Hmgb3O54879 Gtf2e1-201ENSMUST00000023525 3084 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Hmgb3O54879 C1qtnf9-201ENSMUST00000025940 1903 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Hmgb3O54879 Magee1-201ENSMUST00000033578 3550 ntAPPRIS P1 BASIC10.2□□□□□ -0.78
Hmgb3O54879 Tpcn2-201ENSMUST00000058022 2993 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Hmgb3O54879 Mtap-201ENSMUST00000058030 2797 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Hmgb3O54879 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC10.2□□□□□ -0.78
Hmgb3O54879 Alkbh7-202ENSMUST00000074141 736 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Hmgb3O54879 Slc9b1-201ENSMUST00000078568 2248 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Hmgb3O54879 Ppil3-201ENSMUST00000081677 896 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Hmgb3O54879 Gm26035-201ENSMUST00000083065 308 ntBASIC10.2□□□□□ -0.78
Hmgb3O54879 Rnf151-201ENSMUST00000008626 1189 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Hmgb3O54879 Zfp64-201ENSMUST00000087971 2438 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Hmgb3O54879 Calu-202ENSMUST00000090481 2670 ntAPPRIS ALT1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Hmgb3O54879 Camta2-201ENSMUST00000036299 4495 ntAPPRIS P3 TSL 1 (best) BASIC10.2□□□□□ -0.78
Hmgb3O54879 Pnpla6-212ENSMUST00000208002 4444 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Hmgb3O54879 Axl-201ENSMUST00000002677 4265 ntAPPRIS P3 TSL 1 (best) BASIC10.2□□□□□ -0.78
Hmgb3O54879 Herc4-201ENSMUST00000020258 3898 ntAPPRIS P2 TSL 1 (best) BASIC10.2□□□□□ -0.78
Hmgb3O54879 Cyp2s1-201ENSMUST00000043314 2745 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Hmgb3O54879 Siglecg-201ENSMUST00000005592 2569 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Hmgb3O54879 Ccdc154-203ENSMUST00000182621 2402 ntAPPRIS P2 TSL 5 BASIC10.19□□□□□ -0.78
Hmgb3O54879 Slc26a6-201ENSMUST00000098376 2402 ntAPPRIS ALT2 TSL 5 BASIC10.19□□□□□ -0.78
Hmgb3O54879 Tnfrsf22-203ENSMUST00000146692 2298 ntAPPRIS P3 TSL 1 (best) BASIC10.19□□□□□ -0.78
Hmgb3O54879 St6galnac6-201ENSMUST00000072111 2277 ntAPPRIS P3 TSL 5 BASIC10.19□□□□□ -0.78
Hmgb3O54879 Disp2-201ENSMUST00000037547 6626 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Hmgb3O54879 Celsr2-201ENSMUST00000090558 10598 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Hmgb3O54879 P2ry1-201ENSMUST00000029331 3886 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Hmgb3O54879 Fam161a-203ENSMUST00000109557 1947 ntAPPRIS P1 TSL 2 BASIC10.19□□□□□ -0.78
Hmgb3O54879 Tspan32-202ENSMUST00000075172 1876 ntAPPRIS P3 TSL 1 (best) BASIC10.19□□□□□ -0.78
Hmgb3O54879 N6amt1-203ENSMUST00000118310 1700 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
Hmgb3O54879 Zfp518b-203ENSMUST00000179555 6816 ntAPPRIS P1 TSL 2 BASIC10.19□□□□□ -0.78
Hmgb3O54879 Acnat2-201ENSMUST00000081541 1664 ntAPPRIS P2 TSL 1 (best) BASIC10.19□□□□□ -0.78
Hmgb3O54879 Olfr914-202ENSMUST00000217057 4948 ntAPPRIS P1 TSL 3 BASIC10.19□□□□□ -0.78
Hmgb3O54879 Gtf2h4-207ENSMUST00000160734 1569 ntAPPRIS P1 TSL 5 BASIC10.19□□□□□ -0.78
Hmgb3O54879 Prkcg-201ENSMUST00000100301 3127 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Hmgb3O54879 Orc6-202ENSMUST00000170141 1466 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
Hmgb3O54879 Pamr1-201ENSMUST00000028612 2864 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Hmgb3O54879 Tdrd12-205ENSMUST00000205407 1412 ntTSL 5 BASIC10.19□□□□□ -0.78
Hmgb3O54879 Tfr2-204ENSMUST00000196471 2839 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Retrieved 100 of 76,532 protein–RNA pairs in 303.2 ms