Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Gm6007-201ENSMUST00000208170 823 ntBASIC11.68□□□□□ -0.54
Trim3Q9R1R2 AC139319.1-201ENSMUST00000223331 690 ntTSL 5 BASIC11.68□□□□□ -0.54
Trim3Q9R1R2 AC154305.4-201ENSMUST00000224520 614 ntBASIC11.68□□□□□ -0.54
Trim3Q9R1R2 Krtap4-7-201ENSMUST00000055121 984 ntAPPRIS P1 BASIC11.68□□□□□ -0.54
Trim3Q9R1R2 Gatad2a-201ENSMUST00000065169 3812 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
Trim3Q9R1R2 Tnk1-201ENSMUST00000001626 2778 ntAPPRIS P2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Trim3Q9R1R2 Slc25a40-201ENSMUST00000066921 2784 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Trim3Q9R1R2 Epb41l1-206ENSMUST00000109577 6251 ntTSL 5 BASIC11.68□□□□□ -0.54
Trim3Q9R1R2 Cdv3-203ENSMUST00000116517 3741 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Trim3Q9R1R2 Grk4-202ENSMUST00000074651 3234 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Trim3Q9R1R2 Gm32479-201ENSMUST00000204226 2739 ntTSL 2 BASIC11.68□□□□□ -0.54
Trim3Q9R1R2 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
Trim3Q9R1R2 AC157950.1-201ENSMUST00000217561 2168 ntBASIC11.68□□□□□ -0.54
Trim3Q9R1R2 Bmp2-201ENSMUST00000028836 3555 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Trim3Q9R1R2 Gm44292-201ENSMUST00000205194 2364 ntBASIC11.68□□□□□ -0.54
Trim3Q9R1R2 Fxr1-204ENSMUST00000197694 2129 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
Trim3Q9R1R2 Slc25a22-223ENSMUST00000201710 2565 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
Trim3Q9R1R2 Arrb1-201ENSMUST00000032995 3715 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Trim3Q9R1R2 Rsph3b-201ENSMUST00000024572 1614 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Trim3Q9R1R2 Otud7b-202ENSMUST00000090785 8101 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Trim3Q9R1R2 Sesn2-201ENSMUST00000030724 3475 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Trim3Q9R1R2 Tcea1-201ENSMUST00000081551 2547 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trim3Q9R1R2 Gm42853-201ENSMUST00000201273 1387 ntBASIC11.67□□□□□ -0.54
Trim3Q9R1R2 Grsf1-202ENSMUST00000113234 2286 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Trim3Q9R1R2 Slc29a1-204ENSMUST00000163492 2216 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trim3Q9R1R2 H2-T22-201ENSMUST00000058801 1534 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trim3Q9R1R2 Dppa4-202ENSMUST00000096045 1534 ntAPPRIS P4 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trim3Q9R1R2 Serpinf2-202ENSMUST00000108437 2179 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trim3Q9R1R2 Slc39a9-204ENSMUST00000217889 2155 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Trim3Q9R1R2 Irf6-201ENSMUST00000076521 4113 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trim3Q9R1R2 Ube2a-201ENSMUST00000016452 1732 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trim3Q9R1R2 Nsg2-203ENSMUST00000109409 641 ntTSL 2 BASIC11.67□□□□□ -0.54
Trim3Q9R1R2 Gm11793-201ENSMUST00000120433 981 ntBASIC11.67□□□□□ -0.54
Trim3Q9R1R2 Nr2f1-203ENSMUST00000127137 991 ntTSL 5 BASIC11.67□□□□□ -0.54
Trim3Q9R1R2 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC11.67□□□□□ -0.54
Trim3Q9R1R2 Gm19710-201ENSMUST00000200257 640 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Trim3Q9R1R2 Gm8099-201ENSMUST00000200510 742 ntBASIC11.67□□□□□ -0.54
Trim3Q9R1R2 Gm31992-201ENSMUST00000213387 862 ntTSL 5 BASIC11.67□□□□□ -0.54
Trim3Q9R1R2 Gm29154-230ENSMUST00000215044 1165 ntTSL 5 BASIC11.67□□□□□ -0.54
Trim3Q9R1R2 Ormdl2-204ENSMUST00000219524 724 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
Trim3Q9R1R2 Rwdd3-201ENSMUST00000039761 1145 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trim3Q9R1R2 1500011B03Rik-201ENSMUST00000061251 579 ntAPPRIS P5 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trim3Q9R1R2 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Trim3Q9R1R2 Cog6-201ENSMUST00000036665 3182 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trim3Q9R1R2 Gm37391-201ENSMUST00000194891 2318 ntBASIC11.67□□□□□ -0.54
Trim3Q9R1R2 Rapgef6-202ENSMUST00000101206 5864 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
Trim3Q9R1R2 Fitm2-201ENSMUST00000109418 3967 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trim3Q9R1R2 Pbx1-205ENSMUST00000176540 6876 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trim3Q9R1R2 Uap1l1-201ENSMUST00000102925 3349 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trim3Q9R1R2 Bcar3-201ENSMUST00000029766 3311 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trim3Q9R1R2 Fcrls-201ENSMUST00000090986 2273 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trim3Q9R1R2 Ptger4-201ENSMUST00000047379 3264 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trim3Q9R1R2 Cldn18-204ENSMUST00000136429 1409 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Trim3Q9R1R2 Pcdhgb6-201ENSMUST00000003599 4684 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trim3Q9R1R2 Prrxl1-201ENSMUST00000068938 1610 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Trim3Q9R1R2 Gfra1-201ENSMUST00000026076 4641 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trim3Q9R1R2 Selenot-201ENSMUST00000107924 3157 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trim3Q9R1R2 Fmo1-201ENSMUST00000046049 2388 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trim3Q9R1R2 B230209E15Rik-201ENSMUST00000209115 1597 ntTSL 5 BASIC11.67□□□□□ -0.54
Trim3Q9R1R2 Arhgef10l-202ENSMUST00000069623 4531 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trim3Q9R1R2 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Trim3Q9R1R2 Oit3-201ENSMUST00000009798 2717 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trim3Q9R1R2 Mip-201ENSMUST00000026455 2144 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trim3Q9R1R2 Gm10604-201ENSMUST00000098260 1706 ntAPPRIS P1 BASIC11.66□□□□□ -0.54
Trim3Q9R1R2 Nrg1-201ENSMUST00000073884 2452 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Trim3Q9R1R2 Gm5608-201ENSMUST00000210253 2290 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Trim3Q9R1R2 Cd109-201ENSMUST00000093812 5860 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trim3Q9R1R2 Tns2-202ENSMUST00000169627 4707 ntAPPRIS P2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trim3Q9R1R2 4930563D23Rik-201ENSMUST00000062638 2646 ntAPPRIS P1 BASIC11.66□□□□□ -0.54
Trim3Q9R1R2 Gm10097-201ENSMUST00000180100 2784 ntAPPRIS P1 BASIC11.66□□□□□ -0.54
Trim3Q9R1R2 Gm44775-201ENSMUST00000207266 1456 ntBASIC11.66□□□□□ -0.54
Trim3Q9R1R2 Dnd1-201ENSMUST00000061522 1451 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trim3Q9R1R2 Hsd3b3-201ENSMUST00000090743 1492 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trim3Q9R1R2 Grid2ip-201ENSMUST00000010969 3459 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Trim3Q9R1R2 Elovl1-203ENSMUST00000102673 1248 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Trim3Q9R1R2 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Trim3Q9R1R2 Nat8f1-201ENSMUST00000161198 1021 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trim3Q9R1R2 S100a14-201ENSMUST00000164481 915 ntTSL 2 BASIC11.66□□□□□ -0.54
Trim3Q9R1R2 Men1-210ENSMUST00000166909 295 ntTSL 3 BASIC11.66□□□□□ -0.54
Trim3Q9R1R2 Cox6b2-204ENSMUST00000182173 391 ntTSL 2 BASIC11.66□□□□□ -0.54
Trim3Q9R1R2 Gm45484-201ENSMUST00000210310 1141 ntBASIC11.66□□□□□ -0.54
Trim3Q9R1R2 Rfxank-203ENSMUST00000212320 1121 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Trim3Q9R1R2 AC159896.2-201ENSMUST00000214753 269 ntBASIC11.66□□□□□ -0.54
Trim3Q9R1R2 Tpd52l1-205ENSMUST00000215515 857 ntTSL 2 BASIC11.66□□□□□ -0.54
Trim3Q9R1R2 AC154319.1-201ENSMUST00000216330 312 ntBASIC11.66□□□□□ -0.54
Trim3Q9R1R2 AL589735.1-201ENSMUST00000224353 270 ntBASIC11.66□□□□□ -0.54
Trim3Q9R1R2 Dph3-201ENSMUST00000022461 1057 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trim3Q9R1R2 AC069562.3-201ENSMUST00000225387 587 ntBASIC11.66□□□□□ -0.54
Trim3Q9R1R2 1700029I15Rik-201ENSMUST00000054316 364 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trim3Q9R1R2 Olfr463-201ENSMUST00000081417 936 ntAPPRIS P1 BASIC11.66□□□□□ -0.54
Trim3Q9R1R2 Sox7-201ENSMUST00000079652 3299 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trim3Q9R1R2 Zeb2-202ENSMUST00000068415 5624 ntAPPRIS P2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trim3Q9R1R2 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
Trim3Q9R1R2 Cplx1-201ENSMUST00000046892 2189 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trim3Q9R1R2 Gnb4-205ENSMUST00000155737 5997 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trim3Q9R1R2 Sema4a-215ENSMUST00000169222 3084 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
Trim3Q9R1R2 Plekha5-201ENSMUST00000087622 7382 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
Trim3Q9R1R2 Gm10578-202ENSMUST00000211070 2876 ntTSL 2 BASIC11.66□□□□□ -0.54
Trim3Q9R1R2 Gm44806-201ENSMUST00000205574 2303 ntBASIC11.66□□□□□ -0.54
Trim3Q9R1R2 Nhlrc2-201ENSMUST00000071423 3934 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 40.5 ms