Protein–RNA interactions for Protein: Q9CQX5

Cldnd1, Claudin domain-containing protein 1, mousemouse

Predictions only

Length 253 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cldnd1Q9CQX5 Rffl-205ENSMUST00000103218 1264 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Cldnd1Q9CQX5 Dmrtc1a-204ENSMUST00000121197 1067 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Cldnd1Q9CQX5 Gm13703-201ENSMUST00000150705 449 ntTSL 2 BASIC12.63□□□□□ -0.39
Cldnd1Q9CQX5 Gm16312-201ENSMUST00000156285 362 ntTSL 3 BASIC12.63□□□□□ -0.39
Cldnd1Q9CQX5 Rprl1-201ENSMUST00000158050 327 ntBASIC12.63□□□□□ -0.39
Cldnd1Q9CQX5 Retn-202ENSMUST00000169234 1139 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
Cldnd1Q9CQX5 Ppy-201ENSMUST00000017460 500 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Cldnd1Q9CQX5 Gm22877-201ENSMUST00000175451 105 ntBASIC12.63□□□□□ -0.39
Cldnd1Q9CQX5 Gm20662-201ENSMUST00000176356 601 ntAPPRIS P5 TSL 3 BASIC12.63□□□□□ -0.39
Cldnd1Q9CQX5 Mir8115-201ENSMUST00000184992 119 ntBASIC12.63□□□□□ -0.39
Cldnd1Q9CQX5 1700025F24Rik-201ENSMUST00000185238 894 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Cldnd1Q9CQX5 Gm29187-201ENSMUST00000186681 689 ntTSL 3 BASIC12.63□□□□□ -0.39
Cldnd1Q9CQX5 Gm17877-201ENSMUST00000192578 814 ntBASIC12.63□□□□□ -0.39
Cldnd1Q9CQX5 Gm45120-201ENSMUST00000208880 408 ntBASIC12.63□□□□□ -0.39
Cldnd1Q9CQX5 Gm33979-201ENSMUST00000219486 691 ntTSL 5 BASIC12.63□□□□□ -0.39
Cldnd1Q9CQX5 Npff-201ENSMUST00000023814 540 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Cldnd1Q9CQX5 Tff2-201ENSMUST00000024826 584 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Cldnd1Q9CQX5 Cmbl-201ENSMUST00000070918 1155 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Cldnd1Q9CQX5 Maged2-201ENSMUST00000026302 2207 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Cldnd1Q9CQX5 1700003D09Rik-201ENSMUST00000141929 1389 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Cldnd1Q9CQX5 Slc25a21-205ENSMUST00000217690 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Cldnd1Q9CQX5 Slc4a1ap-201ENSMUST00000114533 2424 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
Cldnd1Q9CQX5 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Cldnd1Q9CQX5 Qsox1-202ENSMUST00000111764 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Cldnd1Q9CQX5 Arfgap1-204ENSMUST00000108861 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Cldnd1Q9CQX5 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Cldnd1Q9CQX5 Acbd5-213ENSMUST00000227809 1986 ntAPPRIS ALT2 BASIC12.63□□□□□ -0.39
Cldnd1Q9CQX5 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Cldnd1Q9CQX5 Myo18a-202ENSMUST00000092884 5117 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
Cldnd1Q9CQX5 Tsc2-221ENSMUST00000228412 5432 ntAPPRIS ALT2 BASIC12.63□□□□□ -0.39
Cldnd1Q9CQX5 Rasl10b-203ENSMUST00000164425 3481 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Cldnd1Q9CQX5 Phactr3-205ENSMUST00000108917 4858 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Cldnd1Q9CQX5 Ppil2-212ENSMUST00000164458 2230 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Cldnd1Q9CQX5 Dhrs3-206ENSMUST00000154208 2337 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Cldnd1Q9CQX5 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC12.62□□□□□ -0.39
Cldnd1Q9CQX5 BC003965-201ENSMUST00000088307 3022 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
Cldnd1Q9CQX5 Luc7l3-202ENSMUST00000107820 3478 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Cldnd1Q9CQX5 Gm44401-201ENSMUST00000204462 2375 ntBASIC12.62□□□□□ -0.39
Cldnd1Q9CQX5 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC12.62□□□□□ -0.39
Cldnd1Q9CQX5 Cd33-201ENSMUST00000004728 1962 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Cldnd1Q9CQX5 Ankrd61-203ENSMUST00000110718 1774 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Cldnd1Q9CQX5 Gm7114-201ENSMUST00000190159 1789 ntBASIC12.62□□□□□ -0.39
Cldnd1Q9CQX5 Gm13600-201ENSMUST00000117949 744 ntBASIC12.62□□□□□ -0.39
Cldnd1Q9CQX5 Kctd20-203ENSMUST00000118762 3839 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Cldnd1Q9CQX5 Gm13668-201ENSMUST00000119237 1001 ntBASIC12.62□□□□□ -0.39
Cldnd1Q9CQX5 4631405J19Rik-204ENSMUST00000145926 936 ntTSL 3 BASIC12.62□□□□□ -0.39
Cldnd1Q9CQX5 AA672651-201ENSMUST00000151550 489 ntTSL 2 BASIC12.62□□□□□ -0.39
Cldnd1Q9CQX5 2610316D01Rik-201ENSMUST00000181047 924 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Cldnd1Q9CQX5 Gm43692-201ENSMUST00000198236 1062 ntBASIC12.62□□□□□ -0.39
Cldnd1Q9CQX5 Gm42657-201ENSMUST00000201746 211 ntBASIC12.62□□□□□ -0.39
Cldnd1Q9CQX5 Isg20-206ENSMUST00000205981 834 ntTSL 3 BASIC12.62□□□□□ -0.39
Cldnd1Q9CQX5 AC121960.1-201ENSMUST00000227982 564 ntBASIC12.62□□□□□ -0.39
Cldnd1Q9CQX5 Gm10371-202ENSMUST00000228010 1081 ntBASIC12.62□□□□□ -0.39
Cldnd1Q9CQX5 Spock1-205ENSMUST00000187852 3113 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Cldnd1Q9CQX5 Bcl2l13-201ENSMUST00000009256 6925 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Cldnd1Q9CQX5 Capn3-204ENSMUST00000110716 2752 ntTSL 5 BASIC12.62□□□□□ -0.39
Cldnd1Q9CQX5 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Cldnd1Q9CQX5 Myh13-202ENSMUST00000108684 6062 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Cldnd1Q9CQX5 Engase-202ENSMUST00000135383 4064 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Cldnd1Q9CQX5 Rnf214-201ENSMUST00000058720 3964 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Cldnd1Q9CQX5 Mef2d-204ENSMUST00000119251 3488 ntTSL 5 BASIC12.61□□□□□ -0.39
Cldnd1Q9CQX5 Nt5dc2-206ENSMUST00000227794 1858 ntAPPRIS ALT2 BASIC12.61□□□□□ -0.39
Cldnd1Q9CQX5 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cldnd1Q9CQX5 Galnt17-201ENSMUST00000086023 8040 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cldnd1Q9CQX5 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Cldnd1Q9CQX5 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Cldnd1Q9CQX5 Drd3-201ENSMUST00000023390 1455 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cldnd1Q9CQX5 Slc6a6-201ENSMUST00000032185 6186 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cldnd1Q9CQX5 Anxa4-202ENSMUST00000113675 2030 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cldnd1Q9CQX5 Ptp4a1-201ENSMUST00000027232 4145 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cldnd1Q9CQX5 Gm37240-203ENSMUST00000154148 2913 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cldnd1Q9CQX5 Agbl3-201ENSMUST00000115009 806 ntTSL 5 BASIC12.61□□□□□ -0.39
Cldnd1Q9CQX5 Gm11801-201ENSMUST00000117807 746 ntBASIC12.61□□□□□ -0.39
Cldnd1Q9CQX5 Gm13937-201ENSMUST00000121000 988 ntBASIC12.61□□□□□ -0.39
Cldnd1Q9CQX5 Gm15619-201ENSMUST00000128415 1294 ntTSL 3 BASIC12.61□□□□□ -0.39
Cldnd1Q9CQX5 E130307A14Rik-203ENSMUST00000136862 608 ntTSL 3 BASIC12.61□□□□□ -0.39
Cldnd1Q9CQX5 5730437C11Rik-201ENSMUST00000155540 242 ntTSL 5 BASIC12.61□□□□□ -0.39
Cldnd1Q9CQX5 Gm15722-201ENSMUST00000159271 661 ntTSL 3 BASIC12.61□□□□□ -0.39
Cldnd1Q9CQX5 Gm16251-201ENSMUST00000162649 338 ntTSL 3 BASIC12.61□□□□□ -0.39
Cldnd1Q9CQX5 Gm10731-201ENSMUST00000181171 448 ntBASIC12.61□□□□□ -0.39
Cldnd1Q9CQX5 Gm28388-201ENSMUST00000186262 437 ntBASIC12.61□□□□□ -0.39
Cldnd1Q9CQX5 Gm5298-201ENSMUST00000201122 892 ntBASIC12.61□□□□□ -0.39
Cldnd1Q9CQX5 Gm8956-201ENSMUST00000203939 825 ntBASIC12.61□□□□□ -0.39
Cldnd1Q9CQX5 6430531B16Rik-204ENSMUST00000209335 898 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cldnd1Q9CQX5 Cinp-204ENSMUST00000221102 536 ntTSL 2 BASIC12.61□□□□□ -0.39
Cldnd1Q9CQX5 AC154257.1-202ENSMUST00000224729 843 ntBASIC12.61□□□□□ -0.39
Cldnd1Q9CQX5 Smco2-201ENSMUST00000032433 1276 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cldnd1Q9CQX5 Thap1-201ENSMUST00000036807 2295 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cldnd1Q9CQX5 Bace1-201ENSMUST00000034591 6058 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cldnd1Q9CQX5 Zfp819-203ENSMUST00000120935 2156 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Cldnd1Q9CQX5 Acss1-201ENSMUST00000028944 3618 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cldnd1Q9CQX5 Mast1-202ENSMUST00000119820 2078 ntTSL 5 BASIC12.61□□□□□ -0.39
Cldnd1Q9CQX5 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cldnd1Q9CQX5 Wdfy3-206ENSMUST00000174698 3858 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Cldnd1Q9CQX5 Sbk1-201ENSMUST00000056028 4109 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cldnd1Q9CQX5 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cldnd1Q9CQX5 Dgkb-205ENSMUST00000221176 1439 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Cldnd1Q9CQX5 4930486L24Rik-201ENSMUST00000091569 1432 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cldnd1Q9CQX5 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
Cldnd1Q9CQX5 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 57.7 ms