Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Ccdc94-201ENSMUST00000086869 1311 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Ccdc28bQ8CEG5 Spns3-202ENSMUST00000092940 2080 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Ccdc28bQ8CEG5 Tanc2-202ENSMUST00000100330 11855 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
Ccdc28bQ8CEG5 Plce1-204ENSMUST00000182481 8357 ntAPPRIS P2 TSL 5 BASIC12.24□□□□□ -0.45
Ccdc28bQ8CEG5 Otud7b-201ENSMUST00000035519 8043 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Ccdc28bQ8CEG5 Robo3-201ENSMUST00000034643 4712 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Ccdc28bQ8CEG5 Pde3a-201ENSMUST00000043259 12302 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Ccdc28bQ8CEG5 Bub3-203ENSMUST00000207442 3414 ntAPPRIS ALT1 TSL 3 BASIC12.24□□□□□ -0.45
Ccdc28bQ8CEG5 Slc38a3-202ENSMUST00000167868 3151 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Ccdc28bQ8CEG5 Rpap2-204ENSMUST00000112654 2914 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Ccdc28bQ8CEG5 Pkp3-201ENSMUST00000066873 2848 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Ccdc28bQ8CEG5 Gm26642-201ENSMUST00000180981 2782 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Ccdc28bQ8CEG5 Odf2-209ENSMUST00000113764 2450 ntAPPRIS P3 TSL 5 BASIC12.23□□□□□ -0.45
Ccdc28bQ8CEG5 Ctsc-201ENSMUST00000032779 2493 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc28bQ8CEG5 Vmn2r-ps25-201ENSMUST00000202322 2321 ntBASIC12.23□□□□□ -0.45
Ccdc28bQ8CEG5 Lgsn-201ENSMUST00000062560 1937 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc28bQ8CEG5 F3-201ENSMUST00000029771 1872 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc28bQ8CEG5 Lsp1-205ENSMUST00000105968 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc28bQ8CEG5 Fyttd1-211ENSMUST00000171325 4295 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc28bQ8CEG5 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc28bQ8CEG5 Wdr13-201ENSMUST00000033506 4183 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc28bQ8CEG5 Bmp3-201ENSMUST00000031278 6548 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc28bQ8CEG5 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc28bQ8CEG5 Gm12384-201ENSMUST00000119228 919 ntBASIC12.23□□□□□ -0.45
Ccdc28bQ8CEG5 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC12.23□□□□□ -0.45
Ccdc28bQ8CEG5 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
Ccdc28bQ8CEG5 Carmn-202ENSMUST00000182244 988 ntTSL 2 BASIC12.23□□□□□ -0.45
Ccdc28bQ8CEG5 Gm37935-201ENSMUST00000192012 982 ntBASIC12.23□□□□□ -0.45
Ccdc28bQ8CEG5 Gm8099-201ENSMUST00000200510 742 ntBASIC12.23□□□□□ -0.45
Ccdc28bQ8CEG5 Majin-201ENSMUST00000025699 1239 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc28bQ8CEG5 Dip2c-201ENSMUST00000166299 4822 ntTSL 5 BASIC12.23□□□□□ -0.45
Ccdc28bQ8CEG5 Palld-204ENSMUST00000121785 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc28bQ8CEG5 Gm10767-202ENSMUST00000168767 2067 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc28bQ8CEG5 Shank2-202ENSMUST00000105900 8169 ntTSL 5 BASIC12.23□□□□□ -0.45
Ccdc28bQ8CEG5 Tmem161a-201ENSMUST00000002413 3018 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc28bQ8CEG5 Tubgcp2-201ENSMUST00000026547 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc28bQ8CEG5 B230398E01Rik-201ENSMUST00000125186 1958 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc28bQ8CEG5 Knop1-202ENSMUST00000063607 4884 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc28bQ8CEG5 Fggy-201ENSMUST00000043335 1910 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc28bQ8CEG5 Ctsd-201ENSMUST00000066401 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc28bQ8CEG5 Cnot10-201ENSMUST00000070117 2853 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc28bQ8CEG5 Nfia-202ENSMUST00000075448 9526 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc28bQ8CEG5 Mtap-201ENSMUST00000058030 2797 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc28bQ8CEG5 Pou1f1-201ENSMUST00000004964 1773 ntTSL 5 BASIC12.23□□□□□ -0.45
Ccdc28bQ8CEG5 Gtf2ird1-203ENSMUST00000100650 3487 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc28bQ8CEG5 Smc4-201ENSMUST00000042901 4316 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc28bQ8CEG5 Gm2916-202ENSMUST00000181779 1702 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Ccdc28bQ8CEG5 Adamts16-202ENSMUST00000109694 3378 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc28bQ8CEG5 Picalm-213ENSMUST00000208742 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc28bQ8CEG5 Bach2os-201ENSMUST00000126225 1661 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc28bQ8CEG5 Clspn-201ENSMUST00000048391 5027 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc28bQ8CEG5 Arvcf-204ENSMUST00000115613 4800 ntAPPRIS P3 TSL 5 BASIC12.22□□□□□ -0.45
Ccdc28bQ8CEG5 Cyp2s1-202ENSMUST00000108395 3161 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc28bQ8CEG5 Mrvi1-201ENSMUST00000005751 6198 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc28bQ8CEG5 Kir3dl1-202ENSMUST00000113105 1544 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc28bQ8CEG5 Cpn2-201ENSMUST00000064856 4583 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc28bQ8CEG5 Nrd1-203ENSMUST00000106644 3784 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Ccdc28bQ8CEG5 Esrp1-201ENSMUST00000043781 3743 ntTSL 5 BASIC12.22□□□□□ -0.45
Ccdc28bQ8CEG5 Gm9466-201ENSMUST00000218144 2246 ntBASIC12.22□□□□□ -0.45
Ccdc28bQ8CEG5 AC159195.3-201ENSMUST00000225162 2211 ntBASIC12.22□□□□□ -0.45
Ccdc28bQ8CEG5 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc28bQ8CEG5 Gm42372-201ENSMUST00000206129 5067 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Ccdc28bQ8CEG5 Zfp362-202ENSMUST00000106072 2812 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Ccdc28bQ8CEG5 Olfr649-202ENSMUST00000106859 1382 ntAPPRIS P1 TSL 3 BASIC12.22□□□□□ -0.45
Ccdc28bQ8CEG5 Prpf19-203ENSMUST00000179297 6035 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc28bQ8CEG5 Agtrap-201ENSMUST00000030865 3996 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc28bQ8CEG5 Gm13657-201ENSMUST00000135682 1939 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc28bQ8CEG5 Arhgap30-201ENSMUST00000056449 4494 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc28bQ8CEG5 Tssc4-202ENSMUST00000105920 895 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc28bQ8CEG5 Apoc1-202ENSMUST00000108451 532 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc28bQ8CEG5 Mrpl53-201ENSMUST00000113938 695 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc28bQ8CEG5 Gm14064-201ENSMUST00000134833 727 ntTSL 3 BASIC12.22□□□□□ -0.45
Ccdc28bQ8CEG5 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC12.22□□□□□ -0.45
Ccdc28bQ8CEG5 Ppt2-202ENSMUST00000166040 1139 ntAPPRIS P1 TSL 3 BASIC12.22□□□□□ -0.45
Ccdc28bQ8CEG5 Gm23363-201ENSMUST00000175024 79 ntBASIC12.22□□□□□ -0.45
Ccdc28bQ8CEG5 Gltpd2-202ENSMUST00000179000 794 ntAPPRIS ALT2 TSL 2 BASIC12.22□□□□□ -0.45
Ccdc28bQ8CEG5 Lce1j-202ENSMUST00000186525 703 ntAPPRIS P1 TSL 3 BASIC12.22□□□□□ -0.45
Ccdc28bQ8CEG5 Gm44772-201ENSMUST00000207623 1191 ntBASIC12.22□□□□□ -0.45
Ccdc28bQ8CEG5 Med27-201ENSMUST00000028139 1254 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc28bQ8CEG5 Prg2-201ENSMUST00000028467 838 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc28bQ8CEG5 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc28bQ8CEG5 Atpif1-201ENSMUST00000067496 539 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc28bQ8CEG5 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC12.22□□□□□ -0.45
Ccdc28bQ8CEG5 Cd300lf-201ENSMUST00000051264 1864 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc28bQ8CEG5 Dmbt1-201ENSMUST00000084509 6243 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc28bQ8CEG5 Cln3-201ENSMUST00000032962 2386 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc28bQ8CEG5 Gm14132-201ENSMUST00000117188 1719 ntBASIC12.22□□□□□ -0.45
Ccdc28bQ8CEG5 Sgce-209ENSMUST00000133306 1619 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc28bQ8CEG5 Ctps2-205ENSMUST00000112302 3223 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc28bQ8CEG5 Neu2-206ENSMUST00000166259 1596 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc28bQ8CEG5 Tiparp-201ENSMUST00000047906 4191 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ccdc28bQ8CEG5 5033428I22Rik-201ENSMUST00000181638 2040 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Ccdc28bQ8CEG5 6030458C11Rik-201ENSMUST00000057256 3966 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Ccdc28bQ8CEG5 Arhgap24-206ENSMUST00000112854 2991 ntTSL 5 BASIC12.21□□□□□ -0.45
Ccdc28bQ8CEG5 Prps1-201ENSMUST00000033809 1965 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Ccdc28bQ8CEG5 Gm26883-201ENSMUST00000180945 4878 ntTSL 5 BASIC12.21□□□□□ -0.45
Ccdc28bQ8CEG5 Gng7-203ENSMUST00000117805 3382 ntAPPRIS ALT1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Ccdc28bQ8CEG5 AC126262.1-201ENSMUST00000221802 1904 ntBASIC12.21□□□□□ -0.45
Ccdc28bQ8CEG5 Gm30725-201ENSMUST00000195170 1419 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Ccdc28bQ8CEG5 Rdh8-201ENSMUST00000066387 1405 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 53.6 ms