Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Ankrd42-205ENSMUST00000138267 2827 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Usp47Q8BY87 Fam13b-201ENSMUST00000040506 3343 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Usp47Q8BY87 Kdm2b-204ENSMUST00000118027 5062 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Usp47Q8BY87 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC17.38■□□□□ 0.37
Usp47Q8BY87 F830115B05Rik-201ENSMUST00000197638 1894 ntBASIC17.38■□□□□ 0.37
Usp47Q8BY87 Hexim2-202ENSMUST00000107037 1221 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
Usp47Q8BY87 Gm6039-201ENSMUST00000121667 1250 ntBASIC17.38■□□□□ 0.37
Usp47Q8BY87 Smpd4-223ENSMUST00000172182 516 ntTSL 3 BASIC17.38■□□□□ 0.37
Usp47Q8BY87 Gm45339-201ENSMUST00000210823 877 ntTSL 5 BASIC17.38■□□□□ 0.37
Usp47Q8BY87 Polr2d-201ENSMUST00000025106 956 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Usp47Q8BY87 Gm11555-201ENSMUST00000073126 492 ntTSL 5 BASIC17.38■□□□□ 0.37
Usp47Q8BY87 Tnni3-201ENSMUST00000098859 912 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Usp47Q8BY87 Fem1a-201ENSMUST00000060253 6816 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
Usp47Q8BY87 Rbl2-208ENSMUST00000209518 4792 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Usp47Q8BY87 Rps6ka6-210ENSMUST00000137712 2410 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Usp47Q8BY87 Zfyve28-201ENSMUST00000094868 3983 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Usp47Q8BY87 Ubqln5-201ENSMUST00000053743 1915 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Usp47Q8BY87 Gm43447-201ENSMUST00000198471 1535 ntBASIC17.37■□□□□ 0.37
Usp47Q8BY87 Hsd3b3-203ENSMUST00000107018 1443 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Usp47Q8BY87 Gm6189-201ENSMUST00000164487 2082 ntBASIC17.37■□□□□ 0.37
Usp47Q8BY87 Cadps2-209ENSMUST00000142913 4533 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Usp47Q8BY87 Gm32479-201ENSMUST00000204226 2739 ntTSL 2 BASIC17.37■□□□□ 0.37
Usp47Q8BY87 Hps1-209ENSMUST00000162061 2608 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Usp47Q8BY87 Klhl15-201ENSMUST00000096369 3944 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Usp47Q8BY87 Slc29a1-204ENSMUST00000163492 2216 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Usp47Q8BY87 Lamb2-201ENSMUST00000065014 5629 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Usp47Q8BY87 Olfr322-204ENSMUST00000214392 4779 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Usp47Q8BY87 Gm14340-201ENSMUST00000148700 1913 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Usp47Q8BY87 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Usp47Q8BY87 Lrpprc-201ENSMUST00000112308 4393 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Usp47Q8BY87 Rpl36-ps10-201ENSMUST00000117431 216 ntBASIC17.37■□□□□ 0.37
Usp47Q8BY87 Gm44793-201ENSMUST00000136923 582 ntTSL 2 BASIC17.37■□□□□ 0.37
Usp47Q8BY87 Gm17040-202ENSMUST00000170597 889 ntBASIC17.37■□□□□ 0.37
Usp47Q8BY87 Clmp-201ENSMUST00000034522 4154 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Usp47Q8BY87 Zmym1-202ENSMUST00000106099 2982 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Usp47Q8BY87 Slc35d1-203ENSMUST00000150285 4242 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Usp47Q8BY87 Scarf1-201ENSMUST00000042808 2887 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Usp47Q8BY87 Slc35f6-205ENSMUST00000196740 1972 ntTSL 5 BASIC17.37■□□□□ 0.37
Usp47Q8BY87 AL670603.1-201ENSMUST00000216692 1535 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Usp47Q8BY87 AC163354.1-205ENSMUST00000223262 1511 ntTSL 5 BASIC17.37■□□□□ 0.37
Usp47Q8BY87 Col4a1-201ENSMUST00000033898 6615 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Usp47Q8BY87 Otub2-201ENSMUST00000021620 2791 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Usp47Q8BY87 Evi5l-202ENSMUST00000176072 3932 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Usp47Q8BY87 Rnf14-201ENSMUST00000072376 3038 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Usp47Q8BY87 Dot1l-201ENSMUST00000105336 6808 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Usp47Q8BY87 Pycr1-206ENSMUST00000170556 2914 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Usp47Q8BY87 Dmrta1-201ENSMUST00000052478 4079 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Usp47Q8BY87 P2rx1-201ENSMUST00000021141 2486 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Usp47Q8BY87 Ewsr1-201ENSMUST00000063232 1320 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Usp47Q8BY87 Sgk3-201ENSMUST00000097826 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Usp47Q8BY87 Lcor-201ENSMUST00000067795 4810 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Usp47Q8BY87 Jmjd8-205ENSMUST00000133595 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Usp47Q8BY87 Gm5592-202ENSMUST00000206490 2623 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Usp47Q8BY87 Itga8-201ENSMUST00000028106 5812 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Usp47Q8BY87 Fam46a-201ENSMUST00000034802 5479 ntAPPRIS P3 TSL 3 BASIC17.36■□□□□ 0.37
Usp47Q8BY87 Usp19-201ENSMUST00000006854 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Usp47Q8BY87 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Usp47Q8BY87 Kcnq2-217ENSMUST00000149964 8209 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Usp47Q8BY87 Llgl2-212ENSMUST00000177736 3612 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
Usp47Q8BY87 Ikzf4-204ENSMUST00000222067 2688 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Usp47Q8BY87 Gm14132-201ENSMUST00000117188 1719 ntBASIC17.36■□□□□ 0.37
Usp47Q8BY87 Slc24a4-201ENSMUST00000079020 2337 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Usp47Q8BY87 Mtmr2-201ENSMUST00000034396 3788 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Usp47Q8BY87 Ankrd13c-201ENSMUST00000040787 3903 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Usp47Q8BY87 Myl4-202ENSMUST00000106956 900 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Usp47Q8BY87 Gm11568-201ENSMUST00000107434 1145 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Usp47Q8BY87 Rpl28-ps3-201ENSMUST00000116058 393 ntBASIC17.36■□□□□ 0.37
Usp47Q8BY87 Gm11509-201ENSMUST00000117358 325 ntBASIC17.36■□□□□ 0.37
Usp47Q8BY87 Gm15515-201ENSMUST00000117827 822 ntBASIC17.36■□□□□ 0.37
Usp47Q8BY87 Wsb2-ps-201ENSMUST00000117937 1217 ntBASIC17.36■□□□□ 0.37
Usp47Q8BY87 Fundc1-204ENSMUST00000176638 448 ntTSL 3 BASIC17.36■□□□□ 0.37
Usp47Q8BY87 Gm26782-202ENSMUST00000181697 971 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Usp47Q8BY87 Myl4-201ENSMUST00000018800 879 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Usp47Q8BY87 S100a3-205ENSMUST00000200508 587 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
Usp47Q8BY87 4933424G06Rik-204ENSMUST00000208994 1120 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Usp47Q8BY87 Cdc7-201ENSMUST00000031221 2961 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Usp47Q8BY87 Pla2g4f-201ENSMUST00000054651 3116 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Usp47Q8BY87 Tsku-203ENSMUST00000165257 2514 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
Usp47Q8BY87 Capn3-204ENSMUST00000110716 2752 ntTSL 5 BASIC17.36■□□□□ 0.37
Usp47Q8BY87 Cercam-201ENSMUST00000047521 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Usp47Q8BY87 Scyl3-201ENSMUST00000027876 4368 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Usp47Q8BY87 F11-201ENSMUST00000034064 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Usp47Q8BY87 Cog7-203ENSMUST00000205438 3355 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Usp47Q8BY87 Gm7049-201ENSMUST00000223520 1712 ntBASIC17.35■□□□□ 0.37
Usp47Q8BY87 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Usp47Q8BY87 Grid2-201ENSMUST00000095852 5860 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Usp47Q8BY87 Zc3hc1-203ENSMUST00000115184 1504 ntTSL 5 BASIC17.35■□□□□ 0.37
Usp47Q8BY87 Gm5053-201ENSMUST00000208361 1678 ntBASIC17.35■□□□□ 0.37
Usp47Q8BY87 Gm12589-201ENSMUST00000153767 638 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Usp47Q8BY87 Lmo3-202ENSMUST00000161450 1048 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Usp47Q8BY87 Mir5120-201ENSMUST00000175020 78 ntBASIC17.35■□□□□ 0.37
Usp47Q8BY87 Eloc-207ENSMUST00000187910 620 ntTSL 2 BASIC17.35■□□□□ 0.37
Usp47Q8BY87 AU022133-201ENSMUST00000200601 873 ntBASIC17.35■□□□□ 0.37
Usp47Q8BY87 Mob2-203ENSMUST00000209732 977 ntAPPRIS ALT2 TSL 3 BASIC17.35■□□□□ 0.37
Usp47Q8BY87 Gm270-201ENSMUST00000223010 976 ntBASIC17.35■□□□□ 0.37
Usp47Q8BY87 S100a1-201ENSMUST00000060738 677 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Usp47Q8BY87 Synj1-203ENSMUST00000121759 7090 ntAPPRIS P4 TSL 5 BASIC17.35■□□□□ 0.37
Usp47Q8BY87 Gm43463-201ENSMUST00000195967 1803 ntBASIC17.35■□□□□ 0.37
Usp47Q8BY87 Socs7-201ENSMUST00000045540 7015 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Usp47Q8BY87 Dpp6-204ENSMUST00000122171 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 57.5 ms