Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Krtap5-1-201ENSMUST00000084413 588 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Usp40Q8BWR4 Gpat3-201ENSMUST00000031255 2884 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Usp40Q8BWR4 Ralgapb-201ENSMUST00000046274 8366 ntAPPRIS ALT1 TSL 5 BASIC16.91■□□□□ 0.3
Usp40Q8BWR4 Oxr1-203ENSMUST00000090096 4515 ntTSL 5 BASIC16.91■□□□□ 0.3
Usp40Q8BWR4 Gm37513-201ENSMUST00000194830 2268 ntBASIC16.91■□□□□ 0.3
Usp40Q8BWR4 Gm38378-201ENSMUST00000195153 2268 ntBASIC16.91■□□□□ 0.3
Usp40Q8BWR4 Gne-209ENSMUST00000173234 2149 ntTSL 5 BASIC16.91■□□□□ 0.3
Usp40Q8BWR4 Dync1li1-201ENSMUST00000047404 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Usp40Q8BWR4 Scara5-201ENSMUST00000022610 3794 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Usp40Q8BWR4 Spag1-201ENSMUST00000047348 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Usp40Q8BWR4 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Usp40Q8BWR4 Cep164-204ENSMUST00000213154 6105 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Usp40Q8BWR4 Gm36635-201ENSMUST00000221152 1332 ntTSL 5 BASIC16.91■□□□□ 0.3
Usp40Q8BWR4 Vash2-201ENSMUST00000047409 4032 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Usp40Q8BWR4 Gm8038-201ENSMUST00000164674 2044 ntBASIC16.91■□□□□ 0.3
Usp40Q8BWR4 Klhl32-204ENSMUST00000108218 7143 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Usp40Q8BWR4 Mier3-203ENSMUST00000109272 5279 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Usp40Q8BWR4 Islr-201ENSMUST00000041477 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Usp40Q8BWR4 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Usp40Q8BWR4 A730062M13Rik-201ENSMUST00000192843 1910 ntBASIC16.9■□□□□ 0.3
Usp40Q8BWR4 Lzts3-201ENSMUST00000045761 4201 ntAPPRIS P3 TSL 5 BASIC16.9■□□□□ 0.3
Usp40Q8BWR4 2310035C23Rik-210ENSMUST00000190501 3852 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Usp40Q8BWR4 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Usp40Q8BWR4 Gpr132-201ENSMUST00000021729 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Usp40Q8BWR4 Ccdc162-208ENSMUST00000179614 2739 ntTSL 5 BASIC16.9■□□□□ 0.3
Usp40Q8BWR4 Ppil6-201ENSMUST00000105507 1068 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Usp40Q8BWR4 S100a16-206ENSMUST00000107335 926 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
Usp40Q8BWR4 Gm12857-201ENSMUST00000117678 592 ntBASIC16.9■□□□□ 0.3
Usp40Q8BWR4 Gm12616-201ENSMUST00000118594 382 ntBASIC16.9■□□□□ 0.3
Usp40Q8BWR4 Gm12624-201ENSMUST00000177615 382 ntBASIC16.9■□□□□ 0.3
Usp40Q8BWR4 Gm12621-201ENSMUST00000177760 382 ntBASIC16.9■□□□□ 0.3
Usp40Q8BWR4 Gm12615-201ENSMUST00000177970 382 ntBASIC16.9■□□□□ 0.3
Usp40Q8BWR4 Gm12622-201ENSMUST00000177975 382 ntBASIC16.9■□□□□ 0.3
Usp40Q8BWR4 Gm12627-201ENSMUST00000178412 382 ntBASIC16.9■□□□□ 0.3
Usp40Q8BWR4 Gm12625-201ENSMUST00000179122 382 ntBASIC16.9■□□□□ 0.3
Usp40Q8BWR4 Gm12614-201ENSMUST00000179586 382 ntBASIC16.9■□□□□ 0.3
Usp40Q8BWR4 Gm12613-201ENSMUST00000180323 382 ntBASIC16.9■□□□□ 0.3
Usp40Q8BWR4 1700119H24Rik-201ENSMUST00000187558 588 ntTSL 5 BASIC16.9■□□□□ 0.3
Usp40Q8BWR4 Acy1-208ENSMUST00000214275 1284 ntTSL 5 BASIC16.9■□□□□ 0.3
Usp40Q8BWR4 Gm18556-201ENSMUST00000219748 1031 ntBASIC16.9■□□□□ 0.3
Usp40Q8BWR4 Gm40983-201ENSMUST00000222524 502 ntTSL 3 BASIC16.9■□□□□ 0.3
Usp40Q8BWR4 Gm1821-202ENSMUST00000227415 750 ntBASIC16.9■□□□□ 0.3
Usp40Q8BWR4 Polr2d-201ENSMUST00000025106 956 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Usp40Q8BWR4 Ufc1-201ENSMUST00000080001 1007 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Usp40Q8BWR4 A630014C17Rik-201ENSMUST00000150973 2984 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Usp40Q8BWR4 Mcm8-202ENSMUST00000066559 3397 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
Usp40Q8BWR4 Tead3-207ENSMUST00000219703 1320 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Usp40Q8BWR4 Add2-208ENSMUST00000203786 2289 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
Usp40Q8BWR4 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Usp40Q8BWR4 Steap3-204ENSMUST00000112643 2873 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Usp40Q8BWR4 Ddx31-201ENSMUST00000113853 3271 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Usp40Q8BWR4 P2rx6-201ENSMUST00000023441 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Usp40Q8BWR4 Evc2-201ENSMUST00000056365 4091 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Usp40Q8BWR4 Mrps17-206ENSMUST00000121339 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Usp40Q8BWR4 Gm7002-201ENSMUST00000221386 2165 ntBASIC16.89■□□□□ 0.3
Usp40Q8BWR4 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC16.89■□□□□ 0.29
Usp40Q8BWR4 Ubap2l-202ENSMUST00000064639 4073 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Usp40Q8BWR4 Cacna1g-209ENSMUST00000107791 8002 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
Usp40Q8BWR4 Kcnk2-202ENSMUST00000110920 3572 ntAPPRIS ALT1 TSL 5 BASIC16.89■□□□□ 0.29
Usp40Q8BWR4 Krtap20-2-201ENSMUST00000169954 528 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
Usp40Q8BWR4 1110038B12Rik-203ENSMUST00000173070 434 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Usp40Q8BWR4 1700128F08Rik-201ENSMUST00000034483 1110 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Usp40Q8BWR4 Fam92b-201ENSMUST00000048786 1187 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
Usp40Q8BWR4 Gpr157-201ENSMUST00000094451 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Usp40Q8BWR4 Rbl2-208ENSMUST00000209518 4792 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Usp40Q8BWR4 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Usp40Q8BWR4 Lyar-202ENSMUST00000114106 1504 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
Usp40Q8BWR4 Plxna1-202ENSMUST00000163139 9034 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Usp40Q8BWR4 Jade1-204ENSMUST00000170711 2896 ntTSL 5 BASIC16.89■□□□□ 0.29
Usp40Q8BWR4 Kif13a-201ENSMUST00000056978 6866 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Usp40Q8BWR4 Arhgap25-202ENSMUST00000101197 2493 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Usp40Q8BWR4 Gm37131-201ENSMUST00000192502 1561 ntBASIC16.89■□□□□ 0.29
Usp40Q8BWR4 Ddx23-201ENSMUST00000003450 3187 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
Usp40Q8BWR4 Hdgfl2-212ENSMUST00000226053 2270 ntAPPRIS P2 BASIC16.89■□□□□ 0.29
Usp40Q8BWR4 Esrp1-203ENSMUST00000108311 3864 ntTSL 5 BASIC16.89■□□□□ 0.29
Usp40Q8BWR4 Setd3-202ENSMUST00000109879 2387 ntTSL 3 BASIC16.88■□□□□ 0.29
Usp40Q8BWR4 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Usp40Q8BWR4 Prkar1b-203ENSMUST00000110890 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Usp40Q8BWR4 Ifi47-201ENSMUST00000046704 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Usp40Q8BWR4 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Usp40Q8BWR4 Sipa1l3-207ENSMUST00000182484 2420 ntTSL 5 BASIC16.88■□□□□ 0.29
Usp40Q8BWR4 Pik3cd-201ENSMUST00000038859 4905 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Usp40Q8BWR4 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Usp40Q8BWR4 Gm15432-201ENSMUST00000121106 195 ntBASIC16.88■□□□□ 0.29
Usp40Q8BWR4 Rpl28-ps1-201ENSMUST00000121497 414 ntBASIC16.88■□□□□ 0.29
Usp40Q8BWR4 Gm10051-201ENSMUST00000145209 414 ntBASIC16.88■□□□□ 0.29
Usp40Q8BWR4 Gm14662-201ENSMUST00000145552 734 ntTSL 3 BASIC16.88■□□□□ 0.29
Usp40Q8BWR4 9030616G12Rik-201ENSMUST00000181142 644 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Usp40Q8BWR4 Gm42629-201ENSMUST00000199063 1102 ntBASIC16.88■□□□□ 0.29
Usp40Q8BWR4 Mrpl41-201ENSMUST00000045604 776 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Usp40Q8BWR4 Krtap10-10-201ENSMUST00000218843 1306 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
Usp40Q8BWR4 Pcdh7-202ENSMUST00000094783 3752 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Usp40Q8BWR4 Zfp444-204ENSMUST00000108567 5104 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Usp40Q8BWR4 Ino80-201ENSMUST00000049920 6354 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
Usp40Q8BWR4 Kctd14-205ENSMUST00000206279 2203 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
Usp40Q8BWR4 Arntl2-203ENSMUST00000111638 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Usp40Q8BWR4 Arntl2-201ENSMUST00000080530 1740 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
Usp40Q8BWR4 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Usp40Q8BWR4 Foxp1-205ENSMUST00000113324 2121 ntTSL 5 BASIC16.87■□□□□ 0.29
Usp40Q8BWR4 Foxp1-207ENSMUST00000113328 2121 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 42.2 ms