Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 2410002F23Rik-220ENSMUST00000191537 872 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
Col17a1Q07563 3930402G23Rik-202ENSMUST00000208615 581 ntTSL 3 BASIC18.58■□□□□ 0.56
Col17a1Q07563 Gm2553-201ENSMUST00000215986 605 ntBASIC18.58■□□□□ 0.56
Col17a1Q07563 Cxcl10-201ENSMUST00000038816 1094 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col17a1Q07563 Gm10233-201ENSMUST00000089275 628 ntBASIC18.58■□□□□ 0.56
Col17a1Q07563 Snai2-201ENSMUST00000023356 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col17a1Q07563 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col17a1Q07563 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col17a1Q07563 Gm3693-201ENSMUST00000182077 2865 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Col17a1Q07563 Rbbp8nl-201ENSMUST00000038529 2319 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col17a1Q07563 H2-M10.1-201ENSMUST00000025322 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col17a1Q07563 Tial1-203ENSMUST00000106228 2835 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Col17a1Q07563 Celf4-207ENSMUST00000225477 2626 ntAPPRIS P3 BASIC18.57■□□□□ 0.56
Col17a1Q07563 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC18.57■□□□□ 0.56
Col17a1Q07563 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col17a1Q07563 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col17a1Q07563 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col17a1Q07563 Slfn2-201ENSMUST00000038038 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col17a1Q07563 Mindy3-201ENSMUST00000028105 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col17a1Q07563 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col17a1Q07563 Gm7861-201ENSMUST00000110749 506 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col17a1Q07563 Gm7849-201ENSMUST00000110752 488 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col17a1Q07563 Gm20483-201ENSMUST00000173162 851 ntTSL 2 BASIC18.57■□□□□ 0.56
Col17a1Q07563 Bhmt-ps1-201ENSMUST00000178743 1224 ntBASIC18.57■□□□□ 0.56
Col17a1Q07563 Gm19605-205ENSMUST00000221712 677 ntTSL 3 BASIC18.57■□□□□ 0.56
Col17a1Q07563 Gm37133-201ENSMUST00000192705 1922 ntBASIC18.57■□□□□ 0.56
Col17a1Q07563 Tekt3-201ENSMUST00000035732 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col17a1Q07563 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col17a1Q07563 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col17a1Q07563 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Col17a1Q07563 Pja1-205ENSMUST00000167246 2666 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col17a1Q07563 Gdap2-202ENSMUST00000106997 2014 ntTSL 2 BASIC18.56■□□□□ 0.56
Col17a1Q07563 Kctd20-203ENSMUST00000118762 3839 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Col17a1Q07563 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col17a1Q07563 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Col17a1Q07563 Ccdc32-201ENSMUST00000036470 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col17a1Q07563 Xkr5-202ENSMUST00000095438 2838 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col17a1Q07563 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col17a1Q07563 Cdsn-201ENSMUST00000044804 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col17a1Q07563 C130012C08Rik-201ENSMUST00000194287 3665 ntBASIC18.56■□□□□ 0.56
Col17a1Q07563 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Col17a1Q07563 Gapdhs-203ENSMUST00000182634 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col17a1Q07563 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col17a1Q07563 Cd300ld5-201ENSMUST00000100239 852 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col17a1Q07563 Cd300ld4-201ENSMUST00000100240 852 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col17a1Q07563 Mir453-201ENSMUST00000104732 82 ntBASIC18.56■□□□□ 0.56
Col17a1Q07563 Rpl35a-204ENSMUST00000115078 500 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col17a1Q07563 Gm15373-201ENSMUST00000121495 214 ntBASIC18.56■□□□□ 0.56
Col17a1Q07563 Gm9372-201ENSMUST00000168454 430 ntBASIC18.56■□□□□ 0.56
Col17a1Q07563 Rian-208ENSMUST00000182370 352 ntTSL 3 BASIC18.56■□□□□ 0.56
Col17a1Q07563 Gm31378-201ENSMUST00000213538 267 ntTSL 5 BASIC18.56■□□□□ 0.56
Col17a1Q07563 Cd300ld3-201ENSMUST00000092459 852 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col17a1Q07563 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col17a1Q07563 Dimt1-201ENSMUST00000022203 2051 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col17a1Q07563 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col17a1Q07563 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col17a1Q07563 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Col17a1Q07563 Ubiad1-201ENSMUST00000051633 2992 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col17a1Q07563 Sphk2-201ENSMUST00000072836 2968 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col17a1Q07563 Prss23os-202ENSMUST00000179361 1362 ntBASIC18.56■□□□□ 0.56
Col17a1Q07563 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
Col17a1Q07563 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col17a1Q07563 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col17a1Q07563 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC18.55■□□□□ 0.56
Col17a1Q07563 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
Col17a1Q07563 Samd14-201ENSMUST00000055947 3318 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col17a1Q07563 Rxrg-201ENSMUST00000015987 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col17a1Q07563 Gm9866-202ENSMUST00000182473 1882 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Col17a1Q07563 Slc52a3-203ENSMUST00000109859 2204 ntTSL 5 BASIC18.55■□□□□ 0.56
Col17a1Q07563 Gm26543-201ENSMUST00000180729 2221 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Col17a1Q07563 Trmt10b-202ENSMUST00000107800 983 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
Col17a1Q07563 Olfr761-201ENSMUST00000049620 1029 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Col17a1Q07563 Defb29-201ENSMUST00000060598 462 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col17a1Q07563 Olfr127-201ENSMUST00000076331 1095 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Col17a1Q07563 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Col17a1Q07563 Myef2-206ENSMUST00000142718 2942 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
Col17a1Q07563 Agbl3-204ENSMUST00000115016 3734 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col17a1Q07563 Bmp3-202ENSMUST00000197143 2739 ntTSL 2 BASIC18.55■□□□□ 0.56
Col17a1Q07563 Sybu-209ENSMUST00000228639 4113 ntBASIC18.55■□□□□ 0.56
Col17a1Q07563 Gm14752-201ENSMUST00000120719 2075 ntBASIC18.55■□□□□ 0.56
Col17a1Q07563 Daxx-201ENSMUST00000079421 2580 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col17a1Q07563 Gucy1a2-201ENSMUST00000115733 2243 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
Col17a1Q07563 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col17a1Q07563 AC154725.1-201ENSMUST00000224826 1961 ntBASIC18.54■□□□□ 0.56
Col17a1Q07563 Gcat-201ENSMUST00000006544 2365 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col17a1Q07563 Dmkn-205ENSMUST00000165887 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col17a1Q07563 Rph3al-201ENSMUST00000021208 1690 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Col17a1Q07563 Rbmx-202ENSMUST00000114726 2108 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col17a1Q07563 Fam107b-202ENSMUST00000115052 861 ntTSL 3 BASIC18.54■□□□□ 0.56
Col17a1Q07563 AU015836-205ENSMUST00000163458 911 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Col17a1Q07563 Gm17221-201ENSMUST00000163909 481 ntBASIC18.54■□□□□ 0.56
Col17a1Q07563 Gm17073-201ENSMUST00000168069 556 ntBASIC18.54■□□□□ 0.56
Col17a1Q07563 1700019D03Rik-205ENSMUST00000190726 702 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Col17a1Q07563 Gm4032-203ENSMUST00000211600 531 ntTSL 3 BASIC18.54■□□□□ 0.56
Col17a1Q07563 Gm31557-201ENSMUST00000213825 973 ntTSL 5 BASIC18.54■□□□□ 0.56
Col17a1Q07563 Pebp1-201ENSMUST00000036951 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col17a1Q07563 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
Col17a1Q07563 Sipa1-204ENSMUST00000169854 3583 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Col17a1Q07563 Pbx3-202ENSMUST00000113132 2734 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col17a1Q07563 Brinp1-201ENSMUST00000030036 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 59.8 ms