Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Mir1943-201ENSMUST00000158276 73 ntBASIC10.71□□□□□ -0.69
Nkx3-1P97436 Lypd1-203ENSMUST00000159529 989 ntTSL 2 BASIC10.71□□□□□ -0.69
Nkx3-1P97436 Bscl2-203ENSMUST00000159634 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.69
Nkx3-1P97436 Gm18734-201ENSMUST00000172937 808 ntBASIC10.71□□□□□ -0.69
Nkx3-1P97436 A630076J17Rik-201ENSMUST00000179399 1358 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Nkx3-1P97436 Sh3bp2-207ENSMUST00000179943 2935 ntAPPRIS P3 TSL 1 (best) BASIC10.71□□□□□ -0.69
Nkx3-1P97436 Gm26593-201ENSMUST00000181848 1970 ntTSL 5 BASIC10.71□□□□□ -0.69
Nkx3-1P97436 Rbpsuh-rs3-201ENSMUST00000182751 1441 ntBASIC10.71□□□□□ -0.69
Nkx3-1P97436 Gm18304-201ENSMUST00000189162 546 ntBASIC10.71□□□□□ -0.69
Nkx3-1P97436 Gm28071-201ENSMUST00000190355 478 ntBASIC10.71□□□□□ -0.69
Nkx3-1P97436 Hax1-205ENSMUST00000197767 1092 ntAPPRIS ALT2 TSL 5 BASIC10.71□□□□□ -0.69
Nkx3-1P97436 Gm44968-201ENSMUST00000207652 1171 ntTSL 5 BASIC10.71□□□□□ -0.69
Nkx3-1P97436 Gm45118-201ENSMUST00000208928 825 ntBASIC10.71□□□□□ -0.69
Nkx3-1P97436 Gm7848-201ENSMUST00000210739 718 ntBASIC10.71□□□□□ -0.69
Nkx3-1P97436 Bnip3l-ps-202ENSMUST00000220709 1132 ntBASIC10.71□□□□□ -0.69
Nkx3-1P97436 Rpl17-ps3-201ENSMUST00000221295 556 ntBASIC10.71□□□□□ -0.69
Nkx3-1P97436 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.69
Nkx3-1P97436 AC154680.1-201ENSMUST00000224376 859 ntBASIC10.71□□□□□ -0.69
Nkx3-1P97436 AC159205.5-202ENSMUST00000224849 386 ntBASIC10.71□□□□□ -0.69
Nkx3-1P97436 Spcs1-203ENSMUST00000226374 592 ntBASIC10.71□□□□□ -0.69
Nkx3-1P97436 Pdgfc-201ENSMUST00000029652 3521 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Nkx3-1P97436 Txndc12-201ENSMUST00000030296 1359 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Nkx3-1P97436 Cpxm2-201ENSMUST00000033149 3498 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Nkx3-1P97436 Plekhg6-201ENSMUST00000042647 3299 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Nkx3-1P97436 Gm9996-201ENSMUST00000070359 913 ntBASIC10.71□□□□□ -0.69
Nkx3-1P97436 Cox5a-201ENSMUST00000000090 645 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Nkx3-1P97436 Gpd2-201ENSMUST00000028167 5620 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
Nkx3-1P97436 Tmem268-201ENSMUST00000077709 3765 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
Nkx3-1P97436 Jade2-203ENSMUST00000109091 6099 ntAPPRIS P2 TSL 1 (best) BASIC10.71□□□□□ -0.7
Nkx3-1P97436 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC10.71□□□□□ -0.7
Nkx3-1P97436 Zmynd15-201ENSMUST00000039093 2804 ntAPPRIS P2 TSL 1 (best) BASIC10.71□□□□□ -0.7
Nkx3-1P97436 Pde8b-207ENSMUST00000162153 2474 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Nkx3-1P97436 Tmx2-203ENSMUST00000111665 2282 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Nkx3-1P97436 Zfp207-201ENSMUST00000017567 2245 ntAPPRIS ALT1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Nkx3-1P97436 Dync1i2-202ENSMUST00000100028 2097 ntTSL 5 BASIC10.7□□□□□ -0.7
Nkx3-1P97436 Slc7a15-201ENSMUST00000036938 1907 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Nkx3-1P97436 Nxf1-211ENSMUST00000184970 5591 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Nkx3-1P97436 Mfsd4b4-202ENSMUST00000178563 3523 ntTSL 5 BASIC10.7□□□□□ -0.7
Nkx3-1P97436 Map2k7-206ENSMUST00000110998 3497 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Nkx3-1P97436 Cpne1-201ENSMUST00000079312 1683 ntTSL 5 BASIC10.7□□□□□ -0.7
Nkx3-1P97436 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Nkx3-1P97436 Cd72-204ENSMUST00000107925 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC10.7□□□□□ -0.7
Nkx3-1P97436 Rps6kb1-207ENSMUST00000154617 5531 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Nkx3-1P97436 Cnpy2-202ENSMUST00000219037 1383 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Nkx3-1P97436 Ptp4a1-201ENSMUST00000027232 4145 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Nkx3-1P97436 Ankfn1-201ENSMUST00000050983 2665 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Nkx3-1P97436 Renbp-209ENSMUST00000155597 1310 ntAPPRIS ALT2 TSL 5 BASIC10.7□□□□□ -0.7
Nkx3-1P97436 Ccr6-203ENSMUST00000166348 1310 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Nkx3-1P97436 Gm17518-201ENSMUST00000181232 1346 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Nkx3-1P97436 Ucp3-202ENSMUST00000107059 1260 ntAPPRIS P1 TSL 5 BASIC10.7□□□□□ -0.7
Nkx3-1P97436 Tcf7l2-205ENSMUST00000111651 1127 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Nkx3-1P97436 Hopx-202ENSMUST00000113453 1113 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Nkx3-1P97436 Gm9062-201ENSMUST00000117712 727 ntBASIC10.7□□□□□ -0.7
Nkx3-1P97436 Gsto2-202ENSMUST00000120645 1277 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Nkx3-1P97436 Gm12298-201ENSMUST00000126999 731 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Nkx3-1P97436 Gm12348-201ENSMUST00000138915 313 ntTSL 3 BASIC10.7□□□□□ -0.7
Nkx3-1P97436 Gm15884-201ENSMUST00000143765 643 ntTSL 3 BASIC10.7□□□□□ -0.7
Nkx3-1P97436 Tmem116-209ENSMUST00000156080 1184 ntAPPRIS ALT2 TSL 1 (best) BASIC10.7□□□□□ -0.7
Nkx3-1P97436 Gm23699-201ENSMUST00000158835 135 ntBASIC10.7□□□□□ -0.7
Nkx3-1P97436 4732440D04Rik-202ENSMUST00000159618 413 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Nkx3-1P97436 Gm5732-201ENSMUST00000182596 1007 ntBASIC10.7□□□□□ -0.7
Nkx3-1P97436 Gm33222-201ENSMUST00000193725 654 ntTSL 3 BASIC10.7□□□□□ -0.7
Nkx3-1P97436 1700011B04Rik-203ENSMUST00000220654 1033 ntTSL 5 BASIC10.7□□□□□ -0.7
Nkx3-1P97436 1700011B04Rik-209ENSMUST00000221760 779 ntTSL 5 BASIC10.7□□□□□ -0.7
Nkx3-1P97436 Dhrs4-202ENSMUST00000226168 828 ntBASIC10.7□□□□□ -0.7
Nkx3-1P97436 Ndufaf5-201ENSMUST00000044825 1166 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Nkx3-1P97436 Il17c-201ENSMUST00000050963 719 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Nkx3-1P97436 S100a1-201ENSMUST00000060738 677 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Nkx3-1P97436 Dmrtc1c2-201ENSMUST00000087896 1255 ntAPPRIS ALT2 TSL 1 (best) BASIC10.7□□□□□ -0.7
Nkx3-1P97436 Mybphl-201ENSMUST00000090563 1276 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Nkx3-1P97436 Adora1-202ENSMUST00000086465 4968 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Nkx3-1P97436 Tcf4-204ENSMUST00000114978 2437 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Nkx3-1P97436 AC125108.1-201ENSMUST00000218986 2330 ntBASIC10.7□□□□□ -0.7
Nkx3-1P97436 Omp-201ENSMUST00000098281 2144 ntAPPRIS P1 BASIC10.7□□□□□ -0.7
Nkx3-1P97436 Mier3-203ENSMUST00000109272 5279 ntAPPRIS P2 TSL 1 (best) BASIC10.7□□□□□ -0.7
Nkx3-1P97436 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Nkx3-1P97436 Trim56-201ENSMUST00000054384 9279 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Nkx3-1P97436 Ahcyl2-205ENSMUST00000125911 2039 ntTSL 5 BASIC10.7□□□□□ -0.7
Nkx3-1P97436 Gm45740-201ENSMUST00000212103 2003 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Nkx3-1P97436 4931429P17Rik-201ENSMUST00000061899 2012 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Nkx3-1P97436 Zbtb20-205ENSMUST00000114695 2977 ntAPPRIS P3 TSL 1 (best) BASIC10.7□□□□□ -0.7
Nkx3-1P97436 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC10.7□□□□□ -0.7
Nkx3-1P97436 A230072I06Rik-201ENSMUST00000098935 1839 ntAPPRIS P1 BASIC10.7□□□□□ -0.7
Nkx3-1P97436 Flnc-202ENSMUST00000101617 8939 ntAPPRIS ALT1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Nkx3-1P97436 Gm10392-201ENSMUST00000100807 1732 ntAPPRIS P1 TSL 2 BASIC10.7□□□□□ -0.7
Nkx3-1P97436 Lsp1-205ENSMUST00000105968 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC10.7□□□□□ -0.7
Nkx3-1P97436 Cd80-201ENSMUST00000099816 1701 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Nkx3-1P97436 Luc7l-201ENSMUST00000025023 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC10.69□□□□□ -0.7
Nkx3-1P97436 Stard8-201ENSMUST00000036606 4963 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Nkx3-1P97436 Misp-201ENSMUST00000046833 2414 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Nkx3-1P97436 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC10.69□□□□□ -0.7
Nkx3-1P97436 Spock3-202ENSMUST00000117377 3066 ntAPPRIS ALT2 TSL 1 (best) BASIC10.69□□□□□ -0.7
Nkx3-1P97436 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC10.69□□□□□ -0.7
Nkx3-1P97436 Gm39822-201ENSMUST00000212253 2284 ntTSL 5 BASIC10.69□□□□□ -0.7
Nkx3-1P97436 Gm13142-201ENSMUST00000117213 1453 ntBASIC10.69□□□□□ -0.7
Nkx3-1P97436 Sh3gl3-206ENSMUST00000179318 1489 ntTSL 5 BASIC10.69□□□□□ -0.7
Nkx3-1P97436 Speg-201ENSMUST00000087122 10801 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Nkx3-1P97436 Gm9962-202ENSMUST00000186595 1417 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Nkx3-1P97436 5930412G12Rik-203ENSMUST00000134673 2087 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Nkx3-1P97436 Abca7-202ENSMUST00000132517 6696 ntAPPRIS P3 TSL 5 BASIC10.69□□□□□ -0.7
Retrieved 100 of 76,532 protein–RNA pairs in 50.5 ms