Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Zfp251-201ENSMUST00000080406 3497 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hmgb3O54879 Med1-202ENSMUST00000092735 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hmgb3O54879 3632451O06Rik-201ENSMUST00000036972 8831 ntAPPRIS P2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hmgb3O54879 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Hmgb3O54879 Oraov1-204ENSMUST00000128057 2231 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hmgb3O54879 Prune1-201ENSMUST00000015855 3140 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hmgb3O54879 Dio2-201ENSMUST00000082432 5815 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hmgb3O54879 Gm21038-201ENSMUST00000222205 1383 ntBASIC10.23□□□□□ -0.77
Hmgb3O54879 Zmynd8-205ENSMUST00000109266 5072 ntAPPRIS P4 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hmgb3O54879 AC154639.1-201ENSMUST00000224393 2849 ntBASIC10.23□□□□□ -0.77
Hmgb3O54879 Mmd2-201ENSMUST00000037048 3317 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hmgb3O54879 Cmklr1-201ENSMUST00000047936 2882 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hmgb3O54879 Rtbdn-201ENSMUST00000067472 1908 ntAPPRIS P2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hmgb3O54879 Sp2-202ENSMUST00000107623 2907 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hmgb3O54879 Clasp1-208ENSMUST00000187713 5367 ntAPPRIS ALT2 TSL 5 BASIC10.23□□□□□ -0.77
Hmgb3O54879 Nr5a2-202ENSMUST00000168126 3446 ntTSL 5 BASIC10.23□□□□□ -0.77
Hmgb3O54879 Arsa-202ENSMUST00000165199 3492 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hmgb3O54879 Gm42047-202ENSMUST00000212899 4988 ntTSL 2 BASIC10.23□□□□□ -0.77
Hmgb3O54879 Sgpp2-201ENSMUST00000036172 4002 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hmgb3O54879 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hmgb3O54879 Ociad1-201ENSMUST00000031038 1523 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hmgb3O54879 Gucy2e-203ENSMUST00000108665 3645 ntAPPRIS P1 TSL 5 BASIC10.22□□□□□ -0.77
Hmgb3O54879 Tti2-202ENSMUST00000209851 3133 ntAPPRIS P3 TSL 1 (best) BASIC10.22□□□□□ -0.77
Hmgb3O54879 Tmcc3-204ENSMUST00000121471 2614 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Hmgb3O54879 Rbm4-206ENSMUST00000180248 2610 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Hmgb3O54879 Rgr-203ENSMUST00000225070 4704 ntBASIC10.22□□□□□ -0.77
Hmgb3O54879 Tmem17-201ENSMUST00000059319 1568 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Hmgb3O54879 Egfem1-202ENSMUST00000119598 2687 ntAPPRIS P4 TSL 1 (best) BASIC10.22□□□□□ -0.77
Hmgb3O54879 Tcp11l1-202ENSMUST00000111118 5474 ntAPPRIS P1 TSL 5 BASIC10.22□□□□□ -0.77
Hmgb3O54879 Smtn-202ENSMUST00000020721 3335 ntAPPRIS P2 TSL 1 (best) BASIC10.22□□□□□ -0.77
Hmgb3O54879 Lama1-201ENSMUST00000035471 9518 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Hmgb3O54879 Sh3glb2-202ENSMUST00000100215 1749 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Hmgb3O54879 Atp9a-201ENSMUST00000029060 3529 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Hmgb3O54879 Usp45-201ENSMUST00000040429 5861 ntAPPRIS ALT2 TSL 1 (best) BASIC10.22□□□□□ -0.77
Hmgb3O54879 Rnf6-201ENSMUST00000067837 2388 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Hmgb3O54879 Tiam1-214ENSMUST00000164263 3569 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Hmgb3O54879 Adamts6-201ENSMUST00000065766 4822 ntAPPRIS P1 TSL 5 BASIC10.22□□□□□ -0.77
Hmgb3O54879 Smtn-204ENSMUST00000110011 3020 ntAPPRIS ALT2 TSL 5 BASIC10.22□□□□□ -0.77
Hmgb3O54879 Dnajc5-203ENSMUST00000108797 3664 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Hmgb3O54879 Unk-201ENSMUST00000021116 3735 ntAPPRIS P3 TSL 1 (best) BASIC10.22□□□□□ -0.77
Hmgb3O54879 Zranb2-201ENSMUST00000029831 2540 ntTSL 5 BASIC10.22□□□□□ -0.77
Hmgb3O54879 Rpl37rt-201ENSMUST00000100847 682 ntTSL 3 BASIC10.22□□□□□ -0.77
Hmgb3O54879 Gm11524-201ENSMUST00000119349 807 ntBASIC10.22□□□□□ -0.77
Hmgb3O54879 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC10.22□□□□□ -0.77
Hmgb3O54879 Gm13066-201ENSMUST00000145263 884 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Hmgb3O54879 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC10.22□□□□□ -0.77
Hmgb3O54879 Gm27430-201ENSMUST00000184585 107 ntBASIC10.22□□□□□ -0.77
Hmgb3O54879 Gm27397-201ENSMUST00000184997 107 ntBASIC10.22□□□□□ -0.77
Hmgb3O54879 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC10.22□□□□□ -0.77
Hmgb3O54879 Pex1-208ENSMUST00000195894 528 ntTSL 3 BASIC10.22□□□□□ -0.77
Hmgb3O54879 Gm19184-201ENSMUST00000196798 928 ntBASIC10.22□□□□□ -0.77
Hmgb3O54879 Gm44333-201ENSMUST00000197168 107 ntBASIC10.22□□□□□ -0.77
Hmgb3O54879 Gm18916-201ENSMUST00000198264 1246 ntBASIC10.22□□□□□ -0.77
Hmgb3O54879 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC10.22□□□□□ -0.77
Hmgb3O54879 Gm6458-201ENSMUST00000211573 635 ntBASIC10.22□□□□□ -0.77
Hmgb3O54879 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC10.22□□□□□ -0.77
Hmgb3O54879 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Hmgb3O54879 AC139580.1-202ENSMUST00000223574 928 ntBASIC10.22□□□□□ -0.77
Hmgb3O54879 Chchd1-203ENSMUST00000224633 557 ntBASIC10.22□□□□□ -0.77
Hmgb3O54879 Tln2-207ENSMUST00000215784 8330 ntAPPRIS ALT1 TSL 5 BASIC10.22□□□□□ -0.77
Hmgb3O54879 Vps33b-201ENSMUST00000032749 2574 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Hmgb3O54879 Scamp5-201ENSMUST00000046587 3225 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Hmgb3O54879 Pou6f1-204ENSMUST00000176271 4575 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Hmgb3O54879 Rbm8a-202ENSMUST00000196456 2604 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Hmgb3O54879 Slc46a2-201ENSMUST00000030081 2833 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Hmgb3O54879 Apol7a-201ENSMUST00000010745 1431 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Hmgb3O54879 Grm1-203ENSMUST00000105561 4435 ntAPPRIS ALT2 TSL 1 (best) BASIC10.22□□□□□ -0.77
Hmgb3O54879 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Hmgb3O54879 Nras-201ENSMUST00000029445 4470 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Hmgb3O54879 Fam53b-207ENSMUST00000106169 4536 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Hmgb3O54879 Grip2-201ENSMUST00000159684 3006 ntAPPRIS ALT2 TSL 5 BASIC10.22□□□□□ -0.77
Hmgb3O54879 Hnrnpm-206ENSMUST00000148178 3934 ntAPPRIS P3 TSL 1 (best) BASIC10.22□□□□□ -0.77
Hmgb3O54879 Htr1b-202ENSMUST00000183482 4724 ntAPPRIS P1 TSL 3 BASIC10.22□□□□□ -0.77
Hmgb3O54879 Phf24-203ENSMUST00000107976 6538 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Hmgb3O54879 Adam32-202ENSMUST00000121438 2450 ntAPPRIS P3 TSL 1 (best) BASIC10.22□□□□□ -0.77
Hmgb3O54879 Gdpd2-201ENSMUST00000019503 2495 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Hmgb3O54879 Utrn-206ENSMUST00000219003 5751 ntTSL 5 BASIC10.22□□□□□ -0.77
Hmgb3O54879 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC10.21□□□□□ -0.77
Hmgb3O54879 Gm40377-201ENSMUST00000204604 2015 ntBASIC10.21□□□□□ -0.77
Hmgb3O54879 Nfrkb-201ENSMUST00000086167 5161 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Hmgb3O54879 Hnrnpf-201ENSMUST00000035493 2147 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Hmgb3O54879 Hoxa9-201ENSMUST00000048680 3226 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Hmgb3O54879 Dnmt3c-201ENSMUST00000119996 2223 ntAPPRIS P1 BASIC10.21□□□□□ -0.77
Hmgb3O54879 Cdk5rap3-201ENSMUST00000103152 2250 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Hmgb3O54879 Traf7-201ENSMUST00000070777 2384 ntTSL 5 BASIC10.21□□□□□ -0.77
Hmgb3O54879 Lipo2-201ENSMUST00000147153 3562 ntAPPRIS P1 TSL 5 BASIC10.21□□□□□ -0.77
Hmgb3O54879 Ctsc-201ENSMUST00000032779 2493 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Hmgb3O54879 Zic4-204ENSMUST00000172646 2535 ntAPPRIS P1 TSL 5 BASIC10.21□□□□□ -0.77
Hmgb3O54879 Apbb1-201ENSMUST00000081165 2530 ntAPPRIS ALT1 TSL 5 BASIC10.21□□□□□ -0.77
Hmgb3O54879 Mir686-201ENSMUST00000102174 109 ntBASIC10.21□□□□□ -0.77
Hmgb3O54879 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC10.21□□□□□ -0.77
Hmgb3O54879 Ins2-204ENSMUST00000105932 455 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Hmgb3O54879 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC10.21□□□□□ -0.77
Hmgb3O54879 Cdpf1-202ENSMUST00000125947 706 ntAPPRIS P1 TSL 2 BASIC10.21□□□□□ -0.77
Hmgb3O54879 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC10.21□□□□□ -0.77
Hmgb3O54879 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC10.21□□□□□ -0.77
Hmgb3O54879 Gm24513-201ENSMUST00000174964 138 ntBASIC10.21□□□□□ -0.77
Hmgb3O54879 Gm20753-201ENSMUST00000190105 545 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
Hmgb3O54879 Gm38297-201ENSMUST00000195122 1057 ntBASIC10.21□□□□□ -0.77
Hmgb3O54879 Fam71e1-204ENSMUST00000205422 366 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
Retrieved 100 of 76,532 protein–RNA pairs in 278.6 ms