Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Scn4aQ9ER60 Kbtbd6-201ENSMUST00000100359 2982 ntAPPRIS ALT2 BASIC16.43■□□□□ 0.22
Scn4aQ9ER60 Kbtbd6-202ENSMUST00000226192 2984 ntAPPRIS P2 BASIC16.43■□□□□ 0.22
Scn4aQ9ER60 AC137842.1-201ENSMUST00000227896 2064 ntBASIC16.43■□□□□ 0.22
Scn4aQ9ER60 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC16.43■□□□□ 0.22
Scn4aQ9ER60 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Scn4aQ9ER60 Tmc8-201ENSMUST00000050874 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
Scn4aQ9ER60 D430013B06Rik-201ENSMUST00000192922 1872 ntBASIC16.43■□□□□ 0.22
Scn4aQ9ER60 Ackr4-202ENSMUST00000076147 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Scn4aQ9ER60 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Scn4aQ9ER60 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Scn4aQ9ER60 Rasl10b-203ENSMUST00000164425 3481 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Scn4aQ9ER60 Igf2-202ENSMUST00000097936 2503 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Scn4aQ9ER60 Gm11952-201ENSMUST00000121172 821 ntBASIC16.42■□□□□ 0.22
Scn4aQ9ER60 Gm14113-201ENSMUST00000121399 976 ntBASIC16.42■□□□□ 0.22
Scn4aQ9ER60 Gm17207-201ENSMUST00000168686 645 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Scn4aQ9ER60 Gm21778-201ENSMUST00000178779 471 ntBASIC16.42■□□□□ 0.22
Scn4aQ9ER60 Gm8824-201ENSMUST00000182962 990 ntBASIC16.42■□□□□ 0.22
Scn4aQ9ER60 Gm29918-201ENSMUST00000205635 138 ntTSL 5 BASIC16.42■□□□□ 0.22
Scn4aQ9ER60 1500015O10Rik-201ENSMUST00000027217 902 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Scn4aQ9ER60 H2-Aa-201ENSMUST00000040655 1132 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Scn4aQ9ER60 H3f3a-201ENSMUST00000081026 888 ntAPPRIS ALT1 TSL 5 BASIC16.42■□□□□ 0.22
Scn4aQ9ER60 Ptges3l-201ENSMUST00000093933 748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Scn4aQ9ER60 Socs3-201ENSMUST00000054002 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Scn4aQ9ER60 A330093E20Rik-202ENSMUST00000184994 2327 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Scn4aQ9ER60 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Scn4aQ9ER60 Chrna9-201ENSMUST00000031108 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Scn4aQ9ER60 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Scn4aQ9ER60 Rxrg-201ENSMUST00000015987 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Scn4aQ9ER60 Olfr464-204ENSMUST00000216461 2112 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Scn4aQ9ER60 Rad9b-201ENSMUST00000049009 1631 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Scn4aQ9ER60 Pctp-201ENSMUST00000020864 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Scn4aQ9ER60 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Scn4aQ9ER60 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
Scn4aQ9ER60 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Scn4aQ9ER60 Ska1-201ENSMUST00000040188 2669 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Scn4aQ9ER60 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Scn4aQ9ER60 Trmt1-203ENSMUST00000109767 2138 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
Scn4aQ9ER60 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Scn4aQ9ER60 Ralbp1-201ENSMUST00000024905 3765 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Scn4aQ9ER60 Gm15625-201ENSMUST00000117617 1093 ntBASIC16.42■□□□□ 0.22
Scn4aQ9ER60 Bcl2l12-205ENSMUST00000207755 605 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
Scn4aQ9ER60 Cenpx-201ENSMUST00000026137 692 ntTSL 2 BASIC16.42■□□□□ 0.22
Scn4aQ9ER60 Gm17541-201ENSMUST00000080062 525 ntBASIC16.42■□□□□ 0.22
Scn4aQ9ER60 Gm26035-201ENSMUST00000083065 308 ntBASIC16.42■□□□□ 0.22
Scn4aQ9ER60 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Scn4aQ9ER60 Sirpa-202ENSMUST00000099113 3342 ntTSL 3 BASIC16.42■□□□□ 0.22
Scn4aQ9ER60 Ccdc15-204ENSMUST00000216042 1669 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Scn4aQ9ER60 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Scn4aQ9ER60 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Scn4aQ9ER60 Rnf17-202ENSMUST00000223627 2077 ntBASIC16.42■□□□□ 0.22
Scn4aQ9ER60 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Scn4aQ9ER60 Ncmap-201ENSMUST00000064481 1448 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
Scn4aQ9ER60 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Scn4aQ9ER60 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Scn4aQ9ER60 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Scn4aQ9ER60 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Scn4aQ9ER60 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Scn4aQ9ER60 Gm12626-201ENSMUST00000117339 1983 ntBASIC16.41■□□□□ 0.22
Scn4aQ9ER60 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Scn4aQ9ER60 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Scn4aQ9ER60 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Scn4aQ9ER60 Cfap100-207ENSMUST00000165673 2072 ntAPPRIS P2 TSL 5 BASIC16.41■□□□□ 0.22
Scn4aQ9ER60 Podn-202ENSMUST00000106708 2947 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Scn4aQ9ER60 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Scn4aQ9ER60 Gm23439-201ENSMUST00000104292 132 ntBASIC16.41■□□□□ 0.22
Scn4aQ9ER60 2310009A05Rik-201ENSMUST00000184126 496 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Scn4aQ9ER60 Tmem242-203ENSMUST00000188282 822 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Scn4aQ9ER60 Gm5190-201ENSMUST00000192434 357 ntBASIC16.41■□□□□ 0.22
Scn4aQ9ER60 Gm42375-201ENSMUST00000206226 745 ntTSL 5 BASIC16.41■□□□□ 0.22
Scn4aQ9ER60 Gm5996-201ENSMUST00000211110 718 ntBASIC16.41■□□□□ 0.22
Scn4aQ9ER60 Gm9507-201ENSMUST00000095491 877 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
Scn4aQ9ER60 Olfr1163-201ENSMUST00000099835 1043 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
Scn4aQ9ER60 Gm8146-201ENSMUST00000192106 1847 ntBASIC16.41■□□□□ 0.22
Scn4aQ9ER60 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Scn4aQ9ER60 Ccdc32-201ENSMUST00000036470 1870 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Scn4aQ9ER60 Slc25a18-201ENSMUST00000112682 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Scn4aQ9ER60 Alox5-207ENSMUST00000170186 1929 ntTSL 5 BASIC16.41■□□□□ 0.22
Scn4aQ9ER60 Slc46a3-201ENSMUST00000031655 2434 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Scn4aQ9ER60 AC091764.2-201ENSMUST00000218190 1590 ntTSL 5 BASIC16.41■□□□□ 0.22
Scn4aQ9ER60 Ldb3-203ENSMUST00000022330 1586 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Scn4aQ9ER60 Tbx4-201ENSMUST00000000096 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Scn4aQ9ER60 Gm3409-202ENSMUST00000110599 1154 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
Scn4aQ9ER60 Gm1826-201ENSMUST00000118646 1162 ntBASIC16.4■□□□□ 0.22
Scn4aQ9ER60 Gm11993-201ENSMUST00000121861 820 ntBASIC16.4■□□□□ 0.22
Scn4aQ9ER60 Gm14006-201ENSMUST00000122132 981 ntBASIC16.4■□□□□ 0.22
Scn4aQ9ER60 Junos-202ENSMUST00000125438 559 ntTSL 2 BASIC16.4■□□□□ 0.22
Scn4aQ9ER60 Lrrc75aos2-202ENSMUST00000128647 1227 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Scn4aQ9ER60 Gm22763-201ENSMUST00000158374 107 ntBASIC16.4■□□□□ 0.22
Scn4aQ9ER60 Gm16251-201ENSMUST00000162649 338 ntTSL 3 BASIC16.4■□□□□ 0.22
Scn4aQ9ER60 Gm3415-202ENSMUST00000179214 1154 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
Scn4aQ9ER60 Gm28342-201ENSMUST00000190308 589 ntTSL 3 BASIC16.4■□□□□ 0.22
Scn4aQ9ER60 Gm3409-203ENSMUST00000199142 1167 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Scn4aQ9ER60 Gm3402-203ENSMUST00000200228 1154 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
Scn4aQ9ER60 4933407L21Rik-201ENSMUST00000027426 1146 ntAPPRIS P5 TSL 1 (best) BASIC16.4■□□□□ 0.22
Scn4aQ9ER60 Gm37513-201ENSMUST00000194830 2268 ntBASIC16.4■□□□□ 0.22
Scn4aQ9ER60 Gm38378-201ENSMUST00000195153 2268 ntBASIC16.4■□□□□ 0.22
Scn4aQ9ER60 Tbp-203ENSMUST00000118001 1652 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Scn4aQ9ER60 Gm11494-201ENSMUST00000142279 1738 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Scn4aQ9ER60 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC16.4■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 33 ms