Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Aff3-202ENSMUST00000039827 6010 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Ccdc40Q8BI79 Eprs-201ENSMUST00000046514 4906 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Ccdc40Q8BI79 Rai1-203ENSMUST00000102688 6921 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Ccdc40Q8BI79 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Ccdc40Q8BI79 Gm17244-201ENSMUST00000192482 3416 ntBASIC13.01□□□□□ -0.33
Ccdc40Q8BI79 Hdac5-202ENSMUST00000107150 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Ccdc40Q8BI79 Ndufaf2-201ENSMUST00000163558 678 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Ccdc40Q8BI79 Gm7029-201ENSMUST00000173226 450 ntBASIC13.01□□□□□ -0.33
Ccdc40Q8BI79 Gm20457-201ENSMUST00000173374 682 ntTSL 3 BASIC13.01□□□□□ -0.33
Ccdc40Q8BI79 Gm6652-201ENSMUST00000186414 1070 ntBASIC13.01□□□□□ -0.33
Ccdc40Q8BI79 Gm38230-201ENSMUST00000193572 1159 ntBASIC13.01□□□□□ -0.33
Ccdc40Q8BI79 4930518P08Rik-201ENSMUST00000221281 1187 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Ccdc40Q8BI79 Cfc1-201ENSMUST00000027298 1040 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Ccdc40Q8BI79 Ssc4d-201ENSMUST00000054895 1191 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Ccdc40Q8BI79 Utp23-201ENSMUST00000059599 740 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Ccdc40Q8BI79 Tmprss12-201ENSMUST00000096200 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Ccdc40Q8BI79 Gm15897-201ENSMUST00000117770 1486 ntBASIC13.01□□□□□ -0.33
Ccdc40Q8BI79 Gm44775-201ENSMUST00000207266 1456 ntBASIC13.01□□□□□ -0.33
Ccdc40Q8BI79 AC124433.1-202ENSMUST00000224762 1535 ntBASIC13.01□□□□□ -0.33
Ccdc40Q8BI79 Rgs11-202ENSMUST00000122058 2005 ntAPPRIS ALT2 TSL 2 BASIC13.01□□□□□ -0.33
Ccdc40Q8BI79 Slc5a11-207ENSMUST00000167299 2022 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Ccdc40Q8BI79 AC159195.1-201ENSMUST00000225867 2086 ntBASIC13.01□□□□□ -0.33
Ccdc40Q8BI79 Foxp1-205ENSMUST00000113324 2121 ntTSL 5 BASIC13.01□□□□□ -0.33
Ccdc40Q8BI79 Foxp1-207ENSMUST00000113328 2121 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Ccdc40Q8BI79 Foxp1-228ENSMUST00000177307 2121 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Ccdc40Q8BI79 Clcnkb-201ENSMUST00000006378 2370 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Ccdc40Q8BI79 Tcf4-238ENSMUST00000201631 2660 ntTSL 5 BASIC13.01□□□□□ -0.33
Ccdc40Q8BI79 Gsdma-201ENSMUST00000017348 2726 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Ccdc40Q8BI79 Gm3693-201ENSMUST00000182077 2865 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Ccdc40Q8BI79 Chrd-201ENSMUST00000007171 3275 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Ccdc40Q8BI79 Uap1l1-201ENSMUST00000102925 3349 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Ccdc40Q8BI79 Telo2-201ENSMUST00000024987 3434 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Ccdc40Q8BI79 Slc10a7-201ENSMUST00000034111 3595 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Ccdc40Q8BI79 Washc5-201ENSMUST00000022976 4033 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Ccdc40Q8BI79 Nxf1-211ENSMUST00000184970 5591 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Ccdc40Q8BI79 Jade2-203ENSMUST00000109091 6099 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Ccdc40Q8BI79 Map3k2-201ENSMUST00000096575 10791 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Ccdc40Q8BI79 Strip2-205ENSMUST00000151738 5281 ntTSL 1 (best) BASIC13□□□□□ -0.33
Ccdc40Q8BI79 Rbpj-207ENSMUST00000201883 4961 ntTSL 1 (best) BASIC13□□□□□ -0.33
Ccdc40Q8BI79 Kdm1b-201ENSMUST00000037025 4987 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Ccdc40Q8BI79 Zfp941-201ENSMUST00000080651 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Ccdc40Q8BI79 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC13□□□□□ -0.33
Ccdc40Q8BI79 Slc39a9-204ENSMUST00000217889 2155 ntTSL 1 (best) BASIC13□□□□□ -0.33
Ccdc40Q8BI79 Terb2-201ENSMUST00000028661 2115 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Ccdc40Q8BI79 AC123834.1-201ENSMUST00000225346 2043 ntBASIC13□□□□□ -0.33
Ccdc40Q8BI79 Gimap5-201ENSMUST00000055558 1953 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Ccdc40Q8BI79 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
Ccdc40Q8BI79 Gm12766-201ENSMUST00000140298 1823 ntTSL 1 (best) BASIC13□□□□□ -0.33
Ccdc40Q8BI79 Gm6992-201ENSMUST00000217973 1607 ntBASIC13□□□□□ -0.33
Ccdc40Q8BI79 Dppa4-202ENSMUST00000096045 1534 ntAPPRIS P4 TSL 1 (best) BASIC13□□□□□ -0.33
Ccdc40Q8BI79 Fam78a-201ENSMUST00000056406 4107 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Ccdc40Q8BI79 Gm12363-201ENSMUST00000122250 668 ntBASIC13□□□□□ -0.33
Ccdc40Q8BI79 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC13□□□□□ -0.33
Ccdc40Q8BI79 Gm15479-201ENSMUST00000139309 1133 ntTSL 1 (best) BASIC13□□□□□ -0.33
Ccdc40Q8BI79 1700015O11Rik-201ENSMUST00000180964 678 ntTSL 1 (best) BASIC13□□□□□ -0.33
Ccdc40Q8BI79 2810039B14Rik-206ENSMUST00000185040 1113 ntBASIC13□□□□□ -0.33
Ccdc40Q8BI79 1190007I07Rik-205ENSMUST00000185168 469 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
Ccdc40Q8BI79 Dnm3os-203ENSMUST00000185878 557 ntTSL 5 BASIC13□□□□□ -0.33
Ccdc40Q8BI79 Plin1-203ENSMUST00000205413 1294 ntTSL 1 (best) BASIC13□□□□□ -0.33
Ccdc40Q8BI79 Lsm7-208ENSMUST00000220225 1129 ntTSL 1 (best) BASIC13□□□□□ -0.33
Ccdc40Q8BI79 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Ccdc40Q8BI79 Rpl10-202ENSMUST00000074085 855 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Ccdc40Q8BI79 Scn5a-201ENSMUST00000065196 8287 ntAPPRIS ALT1 TSL 5 BASIC13□□□□□ -0.33
Ccdc40Q8BI79 Wdr36-201ENSMUST00000053663 3281 ntAPPRIS P4 TSL 1 (best) BASIC13□□□□□ -0.33
Ccdc40Q8BI79 Kndc1-201ENSMUST00000053445 7299 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Ccdc40Q8BI79 Mlh1-201ENSMUST00000035079 2754 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Ccdc40Q8BI79 Hspa4l-201ENSMUST00000108086 2744 ntTSL 1 (best) BASIC13□□□□□ -0.33
Ccdc40Q8BI79 Pcgf2-207ENSMUST00000179765 2485 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Ccdc40Q8BI79 Dennd2d-201ENSMUST00000029508 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Ccdc40Q8BI79 Acad9-201ENSMUST00000011492 3930 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Ccdc40Q8BI79 Polrmt-201ENSMUST00000020580 3755 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Ccdc40Q8BI79 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC13□□□□□ -0.33
Ccdc40Q8BI79 Sin3a-206ENSMUST00000168177 5086 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
Ccdc40Q8BI79 Kctd18-210ENSMUST00000164963 2114 ntTSL 5 BASIC13□□□□□ -0.33
Ccdc40Q8BI79 Per1-202ENSMUST00000101004 3507 ntTSL 1 (best) BASIC13□□□□□ -0.33
Ccdc40Q8BI79 Smtn-210ENSMUST00000170588 3386 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Ccdc40Q8BI79 Tmprss6-201ENSMUST00000017086 3191 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Ccdc40Q8BI79 Gm36266-201ENSMUST00000196660 1749 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Ccdc40Q8BI79 Gm38157-201ENSMUST00000194178 1698 ntBASIC12.99□□□□□ -0.33
Ccdc40Q8BI79 Igfbp4-201ENSMUST00000017637 3831 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Ccdc40Q8BI79 Gm28590-201ENSMUST00000185679 1609 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Ccdc40Q8BI79 Rsph3b-201ENSMUST00000024572 1614 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Ccdc40Q8BI79 Glp2r-202ENSMUST00000051765 4873 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Ccdc40Q8BI79 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Ccdc40Q8BI79 Gm8131-201ENSMUST00000213783 1570 ntBASIC12.99□□□□□ -0.33
Ccdc40Q8BI79 Ubap1-201ENSMUST00000072866 3456 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Ccdc40Q8BI79 Trim56-201ENSMUST00000054384 9279 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Ccdc40Q8BI79 Epm2aip1-202ENSMUST00000135807 4245 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
Ccdc40Q8BI79 Tmem56-204ENSMUST00000135818 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Ccdc40Q8BI79 H2-DMb2-201ENSMUST00000041982 1347 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Ccdc40Q8BI79 Mmab-201ENSMUST00000031560 3020 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Ccdc40Q8BI79 Fnbp1-210ENSMUST00000113564 3892 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Ccdc40Q8BI79 Met-202ENSMUST00000115442 4663 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Ccdc40Q8BI79 Ice2-203ENSMUST00000117610 800 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Ccdc40Q8BI79 Pisd-ps1-201ENSMUST00000119128 1115 ntBASIC12.99□□□□□ -0.33
Ccdc40Q8BI79 Pisd-ps2-202ENSMUST00000142526 1175 ntBASIC12.99□□□□□ -0.33
Ccdc40Q8BI79 Gm17150-201ENSMUST00000165577 381 ntBASIC12.99□□□□□ -0.33
Ccdc40Q8BI79 Mrpl30-205ENSMUST00000193673 662 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
Ccdc40Q8BI79 9130604C24Rik-201ENSMUST00000197965 956 ntBASIC12.99□□□□□ -0.33
Ccdc40Q8BI79 Gm43818-201ENSMUST00000200605 466 ntBASIC12.99□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 34 ms