Protein–RNA interactions for Protein: Q3TIX9

Usp39, U4/U6.U5 tri-snRNP-associated protein 2, mousemouse

Predictions only

Length 564 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp39Q3TIX9 Lgr5-201ENSMUST00000020350 4714 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Usp39Q3TIX9 Mrgprg-201ENSMUST00000058092 1821 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Usp39Q3TIX9 Caln1-201ENSMUST00000086029 1801 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Usp39Q3TIX9 Ppp1r10-202ENSMUST00000087211 4255 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Usp39Q3TIX9 Armcx1-201ENSMUST00000035748 2303 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Usp39Q3TIX9 BC024139-201ENSMUST00000054022 2623 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Usp39Q3TIX9 1520401A03Rik-205ENSMUST00000201734 2660 ntAPPRIS P5 TSL 5 BASIC12.04□□□□□ -0.48
Usp39Q3TIX9 Pcdhb16-201ENSMUST00000051442 5225 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Usp39Q3TIX9 Ntrk2-202ENSMUST00000109838 6846 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Usp39Q3TIX9 Pou4f2-201ENSMUST00000034115 3204 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Usp39Q3TIX9 Oprd1-201ENSMUST00000056336 4021 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Usp39Q3TIX9 Drc1-201ENSMUST00000101448 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Usp39Q3TIX9 S1pr1-201ENSMUST00000055676 3046 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Usp39Q3TIX9 Usp5-202ENSMUST00000122110 3076 ntAPPRIS ALT1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Usp39Q3TIX9 Tbc1d14-205ENSMUST00000136189 4436 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Usp39Q3TIX9 Gm12968-201ENSMUST00000138291 1454 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Usp39Q3TIX9 Slc25a45-202ENSMUST00000125114 2599 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Usp39Q3TIX9 Ppm1l-201ENSMUST00000029355 9417 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Usp39Q3TIX9 Mettl13-201ENSMUST00000028017 4541 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Usp39Q3TIX9 Sun2-203ENSMUST00000100439 3768 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Usp39Q3TIX9 Gtf2ird1-209ENSMUST00000171794 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Usp39Q3TIX9 Psd2-205ENSMUST00000176873 4375 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Usp39Q3TIX9 Apoc1-202ENSMUST00000108451 532 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Usp39Q3TIX9 Gm16177-201ENSMUST00000120728 718 ntBASIC12.03□□□□□ -0.48
Usp39Q3TIX9 Gm14064-201ENSMUST00000134833 727 ntTSL 3 BASIC12.03□□□□□ -0.48
Usp39Q3TIX9 Drap1-209ENSMUST00000136579 734 ntTSL 2 BASIC12.03□□□□□ -0.48
Usp39Q3TIX9 Prss51-202ENSMUST00000165710 953 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Usp39Q3TIX9 Dcdc2b-203ENSMUST00000179209 864 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Usp39Q3TIX9 AC153845.2-201ENSMUST00000217535 673 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Usp39Q3TIX9 AC144543.1-201ENSMUST00000221840 1064 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Usp39Q3TIX9 CT009713.10-202ENSMUST00000225734 696 ntBASIC12.03□□□□□ -0.48
Usp39Q3TIX9 Pfdn1-201ENSMUST00000025204 1077 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Usp39Q3TIX9 Cyb5d1-201ENSMUST00000051620 753 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Usp39Q3TIX9 Olfr1209-201ENSMUST00000099809 933 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
Usp39Q3TIX9 AC091764.2-201ENSMUST00000218190 1590 ntTSL 5 BASIC12.03□□□□□ -0.48
Usp39Q3TIX9 Csf1-202ENSMUST00000118593 3058 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Usp39Q3TIX9 Gm26878-201ENSMUST00000181778 1644 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Usp39Q3TIX9 Rgs12-201ENSMUST00000030984 5472 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Usp39Q3TIX9 BC030867-201ENSMUST00000100392 2547 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Usp39Q3TIX9 St6galnac4-204ENSMUST00000179989 2826 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Usp39Q3TIX9 Ylpm1-202ENSMUST00000101202 4605 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Usp39Q3TIX9 Tgfbr2-201ENSMUST00000035014 3476 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Usp39Q3TIX9 Shroom1-202ENSMUST00000093114 2886 ntTSL 2 BASIC12.03□□□□□ -0.48
Usp39Q3TIX9 Cr1l-201ENSMUST00000075451 1651 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Usp39Q3TIX9 Slc4a3-202ENSMUST00000124341 7182 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Usp39Q3TIX9 Rbm12b1-201ENSMUST00000050069 2949 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Usp39Q3TIX9 Aknad1-202ENSMUST00000133931 2603 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Usp39Q3TIX9 Rbm8a-202ENSMUST00000196456 2604 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Usp39Q3TIX9 Cers6-201ENSMUST00000028426 7038 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Usp39Q3TIX9 Hoxd3os1-202ENSMUST00000139005 1701 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Usp39Q3TIX9 Gm43677-201ENSMUST00000198098 2378 ntBASIC12.03□□□□□ -0.48
Usp39Q3TIX9 Dlgap4-201ENSMUST00000000094 1411 ntTSL 5 BASIC12.03□□□□□ -0.48
Usp39Q3TIX9 Sesn2-201ENSMUST00000030724 3475 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Usp39Q3TIX9 Itgal-202ENSMUST00000117762 5222 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Usp39Q3TIX9 Klhl8-202ENSMUST00000112811 2577 ntTSL 5 BASIC12.02□□□□□ -0.48
Usp39Q3TIX9 Chrnd-201ENSMUST00000073252 2925 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Usp39Q3TIX9 Fam118b-203ENSMUST00000121564 1962 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Usp39Q3TIX9 Ddah1-201ENSMUST00000029845 3764 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Usp39Q3TIX9 Asrgl1-201ENSMUST00000049948 4195 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Usp39Q3TIX9 Emd-204ENSMUST00000119197 768 ntTSL 3 BASIC12.02□□□□□ -0.49
Usp39Q3TIX9 Prkaca-ps1-201ENSMUST00000120823 919 ntBASIC12.02□□□□□ -0.49
Usp39Q3TIX9 Ablim2-213ENSMUST00000150146 415 ntTSL 2 BASIC12.02□□□□□ -0.49
Usp39Q3TIX9 C030047K22Rik-201ENSMUST00000150382 1164 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Usp39Q3TIX9 Spdye4b-202ENSMUST00000159781 1128 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Usp39Q3TIX9 U2af1l4-206ENSMUST00000163654 781 ntTSL 2 BASIC12.02□□□□□ -0.49
Usp39Q3TIX9 U2af1l4-221ENSMUST00000167361 860 ntTSL 2 BASIC12.02□□□□□ -0.49
Usp39Q3TIX9 Gm4271-201ENSMUST00000174444 973 ntBASIC12.02□□□□□ -0.49
Usp39Q3TIX9 Tmem205-202ENSMUST00000178988 862 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
Usp39Q3TIX9 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Usp39Q3TIX9 Gm29705-201ENSMUST00000212598 474 ntBASIC12.02□□□□□ -0.49
Usp39Q3TIX9 Tpd52l1-205ENSMUST00000215515 857 ntTSL 2 BASIC12.02□□□□□ -0.49
Usp39Q3TIX9 Gm19163-201ENSMUST00000223313 780 ntBASIC12.02□□□□□ -0.49
Usp39Q3TIX9 9430041J12Rik-201ENSMUST00000050989 534 ntBASIC12.02□□□□□ -0.49
Usp39Q3TIX9 Gm17383-201ENSMUST00000078739 1041 ntBASIC12.02□□□□□ -0.49
Usp39Q3TIX9 Slc33a1-201ENSMUST00000029402 3150 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Usp39Q3TIX9 Wwtr1-201ENSMUST00000029380 4697 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
Usp39Q3TIX9 P2rx1-201ENSMUST00000021141 2486 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Usp39Q3TIX9 Ebp-201ENSMUST00000033509 1743 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Usp39Q3TIX9 Mier1-205ENSMUST00000106858 4830 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
Usp39Q3TIX9 Cyb561d1-201ENSMUST00000065664 4058 ntAPPRIS ALT1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Usp39Q3TIX9 Pbx1-205ENSMUST00000176540 6876 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Usp39Q3TIX9 Neu4-201ENSMUST00000050890 4511 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
Usp39Q3TIX9 Cerk-203ENSMUST00000156546 2162 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Usp39Q3TIX9 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Usp39Q3TIX9 Rabepk-207ENSMUST00000145903 2968 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Usp39Q3TIX9 Wfs1-201ENSMUST00000043964 3787 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Usp39Q3TIX9 Cacna1c-212ENSMUST00000187940 7507 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Usp39Q3TIX9 Mrps26-202ENSMUST00000145614 4278 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Usp39Q3TIX9 Tm9sf2-201ENSMUST00000026624 3107 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Usp39Q3TIX9 Pank4-202ENSMUST00000070953 2706 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Usp39Q3TIX9 Tmem266-202ENSMUST00000085754 4417 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Usp39Q3TIX9 Brinp2-201ENSMUST00000004133 4167 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Usp39Q3TIX9 Micu1-204ENSMUST00000165563 2442 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Usp39Q3TIX9 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Usp39Q3TIX9 Kcnn1-204ENSMUST00000212086 2964 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Usp39Q3TIX9 Gm7104-201ENSMUST00000179741 2532 ntBASIC12.01□□□□□ -0.49
Usp39Q3TIX9 Sorcs1-205ENSMUST00000209413 4398 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Usp39Q3TIX9 Kalrn-210ENSMUST00000114964 2693 ntTSL 5 BASIC12.01□□□□□ -0.49
Usp39Q3TIX9 Rnf17-201ENSMUST00000095793 5264 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Usp39Q3TIX9 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 58.6 ms