Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Gpr157-201ENSMUST00000094451 4900 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sox9Q04887 Tfe3-202ENSMUST00000079542 3163 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Sox9Q04887 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sox9Q04887 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sox9Q04887 Nfasc-201ENSMUST00000043189 5072 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sox9Q04887 Ube2q2-203ENSMUST00000122441 2081 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sox9Q04887 H2-T10-202ENSMUST00000174382 1699 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Sox9Q04887 Taf2-201ENSMUST00000041733 5031 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sox9Q04887 Zbtb45-202ENSMUST00000172240 2722 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sox9Q04887 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sox9Q04887 Dlx1as-202ENSMUST00000137251 647 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Sox9Q04887 Gm20537-202ENSMUST00000173131 889 ntAPPRIS P5 TSL 5 BASIC12.81□□□□□ -0.36
Sox9Q04887 Gm18159-201ENSMUST00000174516 1070 ntBASIC12.81□□□□□ -0.36
Sox9Q04887 Gm2449-201ENSMUST00000180676 585 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Sox9Q04887 Gm28388-201ENSMUST00000186262 437 ntBASIC12.81□□□□□ -0.36
Sox9Q04887 Gm28306-201ENSMUST00000191315 529 ntTSL 5 BASIC12.81□□□□□ -0.36
Sox9Q04887 Olfr431-ps1-201ENSMUST00000192435 544 ntBASIC12.81□□□□□ -0.36
Sox9Q04887 Gm17877-201ENSMUST00000192578 814 ntBASIC12.81□□□□□ -0.36
Sox9Q04887 BC026585-203ENSMUST00000193791 778 ntTSL 2 BASIC12.81□□□□□ -0.36
Sox9Q04887 Gm43520-201ENSMUST00000197996 164 ntBASIC12.81□□□□□ -0.36
Sox9Q04887 5830487J09Rik-201ENSMUST00000198600 1256 ntTSL 5 BASIC12.81□□□□□ -0.36
Sox9Q04887 C530044C16Rik-202ENSMUST00000205217 1239 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Sox9Q04887 6430531B16Rik-204ENSMUST00000209335 898 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sox9Q04887 Gm35713-201ENSMUST00000210516 199 ntBASIC12.81□□□□□ -0.36
Sox9Q04887 Gm2875-201ENSMUST00000211333 360 ntBASIC12.81□□□□□ -0.36
Sox9Q04887 Gm4157-201ENSMUST00000211647 679 ntBASIC12.81□□□□□ -0.36
Sox9Q04887 Mt1-202ENSMUST00000211807 1085 ntBASIC12.81□□□□□ -0.36
Sox9Q04887 Gm6722-201ENSMUST00000221586 390 ntBASIC12.81□□□□□ -0.36
Sox9Q04887 H1foo-201ENSMUST00000037831 1113 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sox9Q04887 Tsen2-201ENSMUST00000040234 2106 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sox9Q04887 Snrpn-201ENSMUST00000059305 1932 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sox9Q04887 Prrx1-204ENSMUST00000174397 6527 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Sox9Q04887 Drg1-201ENSMUST00000020741 1546 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sox9Q04887 Rap2b-201ENSMUST00000049064 6793 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Sox9Q04887 March8-213ENSMUST00000203193 4245 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Sox9Q04887 AC122314.1-201ENSMUST00000223056 2239 ntBASIC12.81□□□□□ -0.36
Sox9Q04887 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sox9Q04887 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sox9Q04887 Wdr36-202ENSMUST00000166214 2942 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sox9Q04887 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC12.81□□□□□ -0.36
Sox9Q04887 Xrra1-201ENSMUST00000036155 2731 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sox9Q04887 Abtb2-201ENSMUST00000076212 4558 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sox9Q04887 Coa4-201ENSMUST00000054310 1391 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sox9Q04887 Ak4-201ENSMUST00000102780 4186 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Sox9Q04887 Palld-203ENSMUST00000121493 5445 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Sox9Q04887 Slc7a6-201ENSMUST00000034378 3750 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sox9Q04887 F10-205ENSMUST00000152034 1449 ntTSL 5 BASIC12.8□□□□□ -0.36
Sox9Q04887 Gm42928-201ENSMUST00000197338 3339 ntBASIC12.8□□□□□ -0.36
Sox9Q04887 Slc10a1-203ENSMUST00000218342 1411 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sox9Q04887 Nbeal2-210ENSMUST00000167320 8803 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sox9Q04887 Gtpbp1-201ENSMUST00000046463 3398 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sox9Q04887 Samd11-202ENSMUST00000217934 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sox9Q04887 1810030O07Rik-201ENSMUST00000060108 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sox9Q04887 Tmem169-201ENSMUST00000027380 2928 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sox9Q04887 Zmym4-201ENSMUST00000106108 7102 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sox9Q04887 Adcyap1r1-204ENSMUST00000165857 1491 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Sox9Q04887 Col6a2-202ENSMUST00000105413 4653 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Sox9Q04887 Oxct1-205ENSMUST00000138927 1743 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Sox9Q04887 Pde4d-220ENSMUST00000177907 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sox9Q04887 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sox9Q04887 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sox9Q04887 Armc7-201ENSMUST00000035240 2260 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sox9Q04887 Creg2-201ENSMUST00000053355 6091 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sox9Q04887 Plch2-207ENSMUST00000139976 5322 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sox9Q04887 Gm5795-201ENSMUST00000100920 984 ntAPPRIS P2 TSL 5 BASIC12.8□□□□□ -0.36
Sox9Q04887 Mir874-201ENSMUST00000104769 76 ntBASIC12.8□□□□□ -0.36
Sox9Q04887 Mrpl55-202ENSMUST00000108784 729 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Sox9Q04887 Gm16071-201ENSMUST00000119589 793 ntBASIC12.8□□□□□ -0.36
Sox9Q04887 Dmrtc1a-204ENSMUST00000121197 1067 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sox9Q04887 Gm8737-201ENSMUST00000122208 642 ntBASIC12.8□□□□□ -0.36
Sox9Q04887 Asb8-202ENSMUST00000123626 1100 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sox9Q04887 Asb8-203ENSMUST00000123922 1162 ntAPPRIS P1 TSL 3 BASIC12.8□□□□□ -0.36
Sox9Q04887 Gm11683-201ENSMUST00000147006 918 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Sox9Q04887 AA387200-201ENSMUST00000147463 1177 ntTSL 3 BASIC12.8□□□□□ -0.36
Sox9Q04887 Gm17099-201ENSMUST00000166780 412 ntTSL 3 BASIC12.8□□□□□ -0.36
Sox9Q04887 Gm3685-201ENSMUST00000169215 984 ntAPPRIS P5 TSL 5 BASIC12.8□□□□□ -0.36
Sox9Q04887 A430105J06Rik-201ENSMUST00000180869 1275 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Sox9Q04887 1700025F24Rik-201ENSMUST00000185238 894 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Sox9Q04887 Gm17826-201ENSMUST00000189720 798 ntBASIC12.8□□□□□ -0.36
Sox9Q04887 Gm42657-201ENSMUST00000201746 211 ntBASIC12.8□□□□□ -0.36
Sox9Q04887 AC120394.2-201ENSMUST00000213905 702 ntTSL 5 BASIC12.8□□□□□ -0.36
Sox9Q04887 Commd4-201ENSMUST00000065358 858 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sox9Q04887 Gm10338-201ENSMUST00000096148 984 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
Sox9Q04887 Slc25a42-201ENSMUST00000063788 3081 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Sox9Q04887 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Sox9Q04887 Aurkc-203ENSMUST00000207711 1320 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sox9Q04887 Gimap3-202ENSMUST00000204036 2145 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sox9Q04887 Nup98-206ENSMUST00000211235 3748 ntTSL 5 BASIC12.8□□□□□ -0.36
Sox9Q04887 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sox9Q04887 Epb41-203ENSMUST00000084253 5141 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sox9Q04887 Adtrp-202ENSMUST00000121404 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sox9Q04887 Sgce-209ENSMUST00000133306 1619 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Sox9Q04887 Actn4-211ENSMUST00000217157 3530 ntTSL 5 BASIC12.8□□□□□ -0.36
Sox9Q04887 Phldb1-214ENSMUST00000147495 5424 ntAPPRIS P5 TSL 5 BASIC12.8□□□□□ -0.36
Sox9Q04887 Scg3-202ENSMUST00000213324 2152 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Sox9Q04887 Ywhab-201ENSMUST00000018470 3013 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sox9Q04887 Fbxw9-201ENSMUST00000095220 1907 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sox9Q04887 Dph7-201ENSMUST00000028351 1666 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sox9Q04887 Prkca-202ENSMUST00000100302 2265 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Sox9Q04887 Cdk5rap3-201ENSMUST00000103152 2250 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 98.4 ms